RNA–Protein interactions for RNA: ENST00000474048.1

PRPF38A-202, Transcript of pre-mRNA processing factor 38A, humanhuman

TSL 1 (best)

Gene PRPF38A, Length 1,059 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF38A-202ENST00000474048 LPAR1Q92633 364 aa11.88□□□□□ -0.51
PRPF38A-202ENST00000474048 ZKSCAN4Q969J2 545 aaPredicted RBP11.88□□□□□ -0.51
PRPF38A-202ENST00000474048 GMCL1Q96IK5 515 aa11.88□□□□□ -0.51
PRPF38A-202ENST00000474048 VCPKMTQ9H867 229 aa11.88□□□□□ -0.51
PRPF38A-202ENST00000474048 NMRK2Q9NPI5 230 aa11.88□□□□□ -0.51
PRPF38A-202ENST00000474048 MAD2L2Q9UI95 211 aa11.88□□□□□ -0.51
PRPF38A-202ENST00000474048 TMX2Q9Y320 296 aa11.88□□□□□ -0.51
PRPF38A-202ENST00000474048 CNTNAP5Q8WYK1 1306 aa11.87□□□□□ -0.51
PRPF38A-202ENST00000474048 PRPF3O43395 683 aaKnown RBP11.87□□□□□ -0.51
PRPF38A-202ENST00000474048 CTDNEP1O95476 244 aa11.87□□□□□ -0.51
PRPF38A-202ENST00000474048 SMARCA1P28370 1054 aa11.87□□□□□ -0.51
PRPF38A-202ENST00000474048 STAT2P52630 851 aa11.87□□□□□ -0.51
PRPF38A-202ENST00000474048 ZNF543Q08ER8 600 aa11.87□□□□□ -0.51
PRPF38A-202ENST00000474048 FOXD4L5Q5VV16 416 aaPredicted RBP11.87□□□□□ -0.51
PRPF38A-202ENST00000474048 CHADLQ6NUI6 762 aa11.87□□□□□ -0.51
PRPF38A-202ENST00000474048 HOMER1Q86YM7 354 aa11.87□□□□□ -0.51
PRPF38A-202ENST00000474048 CMTR1Q8N1G2 835 aaKnown RBP11.87□□□□□ -0.51
PRPF38A-202ENST00000474048 ZNF280CQ8ND82 737 aa11.87□□□□□ -0.51
PRPF38A-202ENST00000474048 RBM46Q8TBY0 533 aaKnown RBP11.87□□□□□ -0.51
PRPF38A-202ENST00000474048 CHURC1Q8WUH1 139 aa11.87□□□□□ -0.51
PRPF38A-202ENST00000474048 FOXD4L4Q8WXT5 416 aaPredicted RBP11.87□□□□□ -0.51
PRPF38A-202ENST00000474048 SPZ1Q9BXG8 430 aa11.87□□□□□ -0.51
PRPF38A-202ENST00000474048 VAT1LQ9HCJ6 419 aa11.87□□□□□ -0.51
PRPF38A-202ENST00000474048 ZNF112Q9UJU3 913 aa11.87□□□□□ -0.51
PRPF38A-202ENST00000474048 SSC5DA1L4H1 1573 aa11.87□□□□□ -0.51
PRPF38A-202ENST00000474048 PAPPA2Q9BXP8 1791 aa11.87□□□□□ -0.51
PRPF38A-202ENST00000474048 PALM3A6NDB9 673 aaPredicted RBP11.86□□□□□ -0.51
PRPF38A-202ENST00000474048 TRIM75PA6NK02 468 aa11.86□□□□□ -0.51
PRPF38A-202ENST00000474048 POTECB2RU33 542 aa11.86□□□□□ -0.51
PRPF38A-202ENST00000474048 C19orf81C9J6K1 198 aa11.86□□□□□ -0.51
PRPF38A-202ENST00000474048 hCG_1984214I3L0E3 225 aa11.86□□□□□ -0.51
PRPF38A-202ENST00000474048 USP2O75604 605 aaPredicted RBP11.86□□□□□ -0.51
PRPF38A-202ENST00000474048 NDUFB10O96000 172 aa11.86□□□□□ -0.51
PRPF38A-202ENST00000474048 ZSCAN22P10073 491 aaPredicted RBP11.86□□□□□ -0.51
PRPF38A-202ENST00000474048 SCG2P13521 617 aa11.86□□□□□ -0.51
PRPF38A-202ENST00000474048 PTPRAP18433 802 aa11.86□□□□□ -0.51
PRPF38A-202ENST00000474048 GUCY1A2P33402 732 aa11.86□□□□□ -0.51
PRPF38A-202ENST00000474048 ECE1P42892 770 aa11.86□□□□□ -0.51
PRPF38A-202ENST00000474048 FKBP1BP68106 108 aa11.86□□□□□ -0.51
PRPF38A-202ENST00000474048 MTMR2Q13614 643 aa11.86□□□□□ -0.51
PRPF38A-202ENST00000474048 RRP1BQ14684 758 aaKnown RBP11.86□□□□□ -0.51
PRPF38A-202ENST00000474048 SHROOM1Q2M3G4 852 aaPredicted RBP11.86□□□□□ -0.51
PRPF38A-202ENST00000474048 SAMD1Q6SPF0 538 aaPredicted RBP11.86□□□□□ -0.51
PRPF38A-202ENST00000474048 KCTD1Q719H9 257 aa11.86□□□□□ -0.51
PRPF38A-202ENST00000474048 HEATR3Q7Z4Q2 680 aa11.86□□□□□ -0.51
PRPF38A-202ENST00000474048 FAM160B2Q86V87 743 aa11.86□□□□□ -0.51
PRPF38A-202ENST00000474048 SPICE1Q8N0Z3 855 aa11.86□□□□□ -0.51
PRPF38A-202ENST00000474048 ZNF713Q8N859 430 aaPredicted RBP11.86□□□□□ -0.51
PRPF38A-202ENST00000474048 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.86□□□□□ -0.51
PRPF38A-202ENST00000474048 TANGO6Q9C0B7 1094 aa11.86□□□□□ -0.51
PRPF38A-202ENST00000474048 KIAA1683Q9H0B3 1180 aa11.86□□□□□ -0.51
PRPF38A-202ENST00000474048 ZHX2Q9Y6X8 837 aa11.86□□□□□ -0.51
PRPF38A-202ENST00000474048 V9GY48 417 aaPredicted RBP11.86□□□□□ -0.51
PRPF38A-202ENST00000474048 OTOFQ9HC10 1997 aa11.86□□□□□ -0.51
PRPF38A-202ENST00000474048 TMEM232C9JQI7 657 aa11.85□□□□□ -0.51
PRPF38A-202ENST00000474048 WDR46O15213 610 aaKnown RBP11.85□□□□□ -0.51
PRPF38A-202ENST00000474048 CELF2O95319 508 aaKnown RBP11.85□□□□□ -0.51
PRPF38A-202ENST00000474048 SNHG28P0DPA3 235 aa11.85□□□□□ -0.51
PRPF38A-202ENST00000474048 NCLP19338 710 aaKnown RBP11.85□□□□□ -0.51
PRPF38A-202ENST00000474048 CALML3P27482 149 aa11.85□□□□□ -0.51
PRPF38A-202ENST00000474048 NLRP5P59047 1200 aa11.85□□□□□ -0.51
PRPF38A-202ENST00000474048 SPP2Q13103 211 aa11.85□□□□□ -0.51
PRPF38A-202ENST00000474048 VGLL4Q14135 290 aa11.85□□□□□ -0.51
PRPF38A-202ENST00000474048 NTRK3Q16288 839 aa11.85□□□□□ -0.51
PRPF38A-202ENST00000474048 CSPP1Q1MSJ5 1256 aa11.85□□□□□ -0.51
PRPF38A-202ENST00000474048 ERO1BQ86YB8 467 aa11.85□□□□□ -0.51
PRPF38A-202ENST00000474048 STAG2Q8N3U4 1231 aa11.85□□□□□ -0.51
PRPF38A-202ENST00000474048 SRBD1Q8N5C6 995 aaKnown RBP11.85□□□□□ -0.51
PRPF38A-202ENST00000474048 RGS22Q8NE09 1264 aa11.85□□□□□ -0.51
PRPF38A-202ENST00000474048 ACER1Q8TDN7 264 aa11.85□□□□□ -0.51
PRPF38A-202ENST00000474048 WDR18Q9BV38 432 aa11.85□□□□□ -0.51
PRPF38A-202ENST00000474048 ZSCAN16Q9H4T2 348 aaPredicted RBP11.85□□□□□ -0.51
PRPF38A-202ENST00000474048 ELP3Q9H9T3 547 aa11.85□□□□□ -0.51
PRPF38A-202ENST00000474048 GBA2Q9HCG7 927 aaPredicted RBP11.85□□□□□ -0.51
PRPF38A-202ENST00000474048 FAM217BQ9NTX9 383 aaPredicted RBP11.85□□□□□ -0.51
PRPF38A-202ENST00000474048 FEM1BQ9UK73 627 aa11.85□□□□□ -0.51
PRPF38A-202ENST00000474048 UNCXA6NJT0 531 aa11.84□□□□□ -0.51
PRPF38A-202ENST00000474048 F13A1P00488 732 aa11.84□□□□□ -0.51
PRPF38A-202ENST00000474048 POTEIP0CG38 1075 aa11.84□□□□□ -0.51
PRPF38A-202ENST00000474048 POTEJP0CG39 1038 aa11.84□□□□□ -0.51
PRPF38A-202ENST00000474048 PTMSP20962 102 aa11.84□□□□□ -0.51
PRPF38A-202ENST00000474048 NAPAP54920 295 aa11.84□□□□□ -0.51
PRPF38A-202ENST00000474048 BACE1P56817 501 aa11.84□□□□□ -0.51
PRPF38A-202ENST00000474048 GUCY1B3Q02153 619 aa11.84□□□□□ -0.51
PRPF38A-202ENST00000474048 PFKFB3Q16875 520 aaPredicted RBP11.84□□□□□ -0.51
PRPF38A-202ENST00000474048 FAM83BQ5T0W9 1011 aa11.84□□□□□ -0.51
PRPF38A-202ENST00000474048 SYDE2Q5VT97 1194 aa11.84□□□□□ -0.51
PRPF38A-202ENST00000474048 CCDC84Q86UT8 332 aaPredicted RBP11.84□□□□□ -0.51
PRPF38A-202ENST00000474048 FAM177A1Q8N128 213 aaPredicted RBP11.84□□□□□ -0.51
PRPF38A-202ENST00000474048 SLC10A4Q96EP9 437 aa11.84□□□□□ -0.51
PRPF38A-202ENST00000474048 OTUD5Q96G74 571 aa11.84□□□□□ -0.51
PRPF38A-202ENST00000474048 UBA5Q9GZZ9 404 aa11.84□□□□□ -0.51
PRPF38A-202ENST00000474048 FRMD4AQ9P2Q2 1039 aaPredicted RBP11.84□□□□□ -0.51
PRPF38A-202ENST00000474048 FZD1Q9UP38 647 aa11.84□□□□□ -0.51
PRPF38A-202ENST00000474048 TRPM7Q96QT4 1865 aa11.83□□□□□ -0.52
PRPF38A-202ENST00000474048 A0A1W2PRG0 241 aa11.83□□□□□ -0.52
PRPF38A-202ENST00000474048 TRAF5O00463 557 aa11.83□□□□□ -0.52
PRPF38A-202ENST00000474048 DTNBO60941 627 aa11.83□□□□□ -0.52
PRPF38A-202ENST00000474048 BRD1O95696 1058 aa11.83□□□□□ -0.52
PRPF38A-202ENST00000474048 DDIT3P35638 169 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms