RNA–Protein interactions for RNA: ENST00000473258.1

COL6A3-210, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 5,433 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-210ENST00000473258 TTC39AQ5SRH9 613 aa9.86□□□□□ -0.83
COL6A3-210ENST00000473258 TTC22Q5TAA0 569 aa9.86□□□□□ -0.83
COL6A3-210ENST00000473258 COG3Q96JB2 828 aa9.86□□□□□ -0.83
COL6A3-210ENST00000473258 RPAP3Q9H6T3 665 aaPredicted RBP9.86□□□□□ -0.83
COL6A3-210ENST00000473258 EMC3Q9P0I2 261 aa9.86□□□□□ -0.83
COL6A3-210ENST00000473258 ZBTB21Q9ULJ3 1066 aa9.86□□□□□ -0.83
COL6A3-210ENST00000473258 WRNQ14191 1432 aaPredicted RBP eCLIP9.86□□□□□ -0.83
COL6A3-210ENST00000473258 CCDC194A0A1B0GVG4 234 aa9.86□□□□□ -0.83
COL6A3-210ENST00000473258 P4HA2O15460 535 aa9.86□□□□□ -0.83
COL6A3-210ENST00000473258 GJC1P36383 396 aa9.86□□□□□ -0.83
COL6A3-210ENST00000473258 SUGP1Q8IWZ8 645 aaKnown RBP9.86□□□□□ -0.83
COL6A3-210ENST00000473258 TRIM8Q9BZR9 551 aa9.86□□□□□ -0.83
COL6A3-210ENST00000473258 SMARCA5O60264 1052 aaPredicted RBP9.85□□□□□ -0.83
COL6A3-210ENST00000473258 PAX3P23760 479 aa9.85□□□□□ -0.83
COL6A3-210ENST00000473258 LONRF3Q496Y0 759 aa9.85□□□□□ -0.83
COL6A3-210ENST00000473258 KLC3Q6P597 504 aa9.85□□□□□ -0.83
COL6A3-210ENST00000473258 ARHGEF18Q6ZSZ5 1173 aa9.85□□□□□ -0.83
COL6A3-210ENST00000473258 UBL4BQ8N7F7 174 aa9.85□□□□□ -0.83
COL6A3-210ENST00000473258 NSMCE1Q8WV22 266 aa9.85□□□□□ -0.83
COL6A3-210ENST00000473258 ZFYVE19Q96K21 471 aa9.85□□□□□ -0.83
COL6A3-210ENST00000473258 HAUS4Q9H6D7 363 aa9.85□□□□□ -0.83
COL6A3-210ENST00000473258 NDE1Q9NXR1 346 aa9.85□□□□□ -0.83
COL6A3-210ENST00000473258 CAPN11Q9UMQ6 739 aa9.85□□□□□ -0.83
COL6A3-210ENST00000473258 SBDSQ9Y3A5 250 aaKnown RBP eCLIP9.85□□□□□ -0.83
COL6A3-210ENST00000473258 IPO5O00410 1097 aaKnown RBP9.85□□□□□ -0.83
COL6A3-210ENST00000473258 S100A1P23297 94 aa9.85□□□□□ -0.83
COL6A3-210ENST00000473258 EIF2B2P49770 351 aaKnown RBP9.85□□□□□ -0.83
COL6A3-210ENST00000473258 TFAP4Q01664 338 aa9.85□□□□□ -0.83
COL6A3-210ENST00000473258 VWA3BQ502W6 1294 aa9.85□□□□□ -0.83
COL6A3-210ENST00000473258 PDXDC1Q6P996 788 aa9.85□□□□□ -0.83
COL6A3-210ENST00000473258 ADCK1Q86TW2 530 aa9.85□□□□□ -0.83
COL6A3-210ENST00000473258 TNIP2Q8NFZ5 429 aa9.85□□□□□ -0.83
COL6A3-210ENST00000473258 LRRC59Q96AG4 307 aaKnown RBP9.85□□□□□ -0.83
COL6A3-210ENST00000473258 NUP58Q9BVL2 599 aa9.85□□□□□ -0.83
COL6A3-210ENST00000473258 IFT122Q9HBG6 1241 aa9.85□□□□□ -0.83
COL6A3-210ENST00000473258 SLC38A10Q9HBR0 1119 aa9.85□□□□□ -0.83
COL6A3-210ENST00000473258 PSD3Q9NYI0 1048 aa9.85□□□□□ -0.83
COL6A3-210ENST00000473258 ZFATQ9P243 1243 aa9.85□□□□□ -0.83
COL6A3-210ENST00000473258 SEPT3Q9UH03 358 aa9.85□□□□□ -0.83
COL6A3-210ENST00000473258 IBTKQ9P2D0 1353 aaPredicted RBP9.85□□□□□ -0.83
COL6A3-210ENST00000473258 RASGRF2O14827 1237 aa9.85□□□□□ -0.83
COL6A3-210ENST00000473258 CRCPO75575 148 aa9.85□□□□□ -0.83
COL6A3-210ENST00000473258 DCTN3O75935 186 aa9.85□□□□□ -0.83
COL6A3-210ENST00000473258 LCA5LO95447 670 aa9.85□□□□□ -0.83
COL6A3-210ENST00000473258 SLC4A2P04920 1241 aa9.85□□□□□ -0.83
COL6A3-210ENST00000473258 MARCKSP29966 332 aaPredicted RBP9.85□□□□□ -0.83
COL6A3-210ENST00000473258 RARSP54136 660 aaKnown RBP9.85□□□□□ -0.83
COL6A3-210ENST00000473258 TBC1D8BQ0IIM8 1120 aa9.85□□□□□ -0.83
COL6A3-210ENST00000473258 RCSD1Q6JBY9 416 aa9.85□□□□□ -0.83
COL6A3-210ENST00000473258 STXBP4Q6ZWJ1 553 aa9.85□□□□□ -0.83
COL6A3-210ENST00000473258 TTC5Q8N0Z6 440 aa9.85□□□□□ -0.83
COL6A3-210ENST00000473258 ELAC2Q9BQ52 826 aaKnown RBP9.85□□□□□ -0.83
COL6A3-210ENST00000473258 CRNKL1Q9BZJ0 848 aaKnown RBP9.85□□□□□ -0.83
COL6A3-210ENST00000473258 HMG20BQ9P0W2 317 aa9.85□□□□□ -0.83
COL6A3-210ENST00000473258 BAG5Q9UL15 447 aa9.85□□□□□ -0.83
COL6A3-210ENST00000473258 KRT6AP02538 564 aa9.85□□□□□ -0.83
COL6A3-210ENST00000473258 SLC4A1P02730 911 aa9.85□□□□□ -0.83
COL6A3-210ENST00000473258 KRT6BP04259 564 aa9.85□□□□□ -0.83
COL6A3-210ENST00000473258 KRT6CP48668 564 aa9.85□□□□□ -0.83
COL6A3-210ENST00000473258 ANGPT1Q15389 498 aa9.85□□□□□ -0.83
COL6A3-210ENST00000473258 CCDC105Q8IYK2 499 aa9.85□□□□□ -0.83
COL6A3-210ENST00000473258 MIEF2Q96C03 454 aa9.85□□□□□ -0.83
COL6A3-210ENST00000473258 RUNDC3BQ96NL0 473 aa9.85□□□□□ -0.83
COL6A3-210ENST00000473258 TRIM56Q9BRZ2 755 aaKnown RBP9.85□□□□□ -0.83
COL6A3-210ENST00000473258 ORC6Q9Y5N6 252 aa9.85□□□□□ -0.83
COL6A3-210ENST00000473258 SFI1A8K8P3 1242 aa9.85□□□□□ -0.83
COL6A3-210ENST00000473258 PECAM1P16284 738 aaPredicted RBP9.85□□□□□ -0.83
COL6A3-210ENST00000473258 PDE6CP51160 858 aa9.85□□□□□ -0.83
COL6A3-210ENST00000473258 DEFA1P59665 94 aa9.85□□□□□ -0.83
COL6A3-210ENST00000473258 DEFA3P59666 94 aa9.85□□□□□ -0.83
COL6A3-210ENST00000473258 AP2B1P63010 937 aa9.85□□□□□ -0.83
COL6A3-210ENST00000473258 GUCY2DQ02846 1103 aa9.85□□□□□ -0.83
COL6A3-210ENST00000473258 MED21Q13503 144 aa9.85□□□□□ -0.83
COL6A3-210ENST00000473258 ICA1LQ8NDH6 482 aa9.85□□□□□ -0.83
COL6A3-210ENST00000473258 BRF1Q92994 677 aa9.85□□□□□ -0.83
COL6A3-210ENST00000473258 EFHD2Q96C19 240 aaPredicted RBP9.85□□□□□ -0.83
COL6A3-210ENST00000473258 CNBD2Q96M20 576 aa9.85□□□□□ -0.83
COL6A3-210ENST00000473258 GYG2O15488 501 aa9.84□□□□□ -0.83
COL6A3-210ENST00000473258 KRT76Q01546 638 aa9.84□□□□□ -0.83
COL6A3-210ENST00000473258 TMEM259Q4ZIN3 620 aa9.84□□□□□ -0.83
COL6A3-210ENST00000473258 CYB5RLQ6IPT4 315 aa9.84□□□□□ -0.83
COL6A3-210ENST00000473258 ELMSAN1Q6PJG2 1045 aa9.84□□□□□ -0.83
COL6A3-210ENST00000473258 GET4Q7L5D6 327 aaPredicted RBP9.84□□□□□ -0.83
COL6A3-210ENST00000473258 MMADHCQ9H3L0 296 aaPredicted RBP9.84□□□□□ -0.83
COL6A3-210ENST00000473258 DNAJC17Q9NVM6 304 aaKnown RBP9.84□□□□□ -0.83
COL6A3-210ENST00000473258 SPOPO43791 374 aa9.84□□□□□ -0.83
COL6A3-210ENST00000473258 KAZNQ674X7 775 aa9.84□□□□□ -0.83
COL6A3-210ENST00000473258 PPP1R42Q7Z4L9 355 aa9.84□□□□□ -0.83
COL6A3-210ENST00000473258 DNAJC9Q8WXX5 260 aa9.84□□□□□ -0.83
COL6A3-210ENST00000473258 MCRS1Q96EZ8 462 aa9.84□□□□□ -0.83
COL6A3-210ENST00000473258 SERPINI1Q99574 410 aa9.84□□□□□ -0.83
COL6A3-210ENST00000473258 CD248Q9HCU0 757 aa9.84□□□□□ -0.83
COL6A3-210ENST00000473258 SNX5Q9Y5X3 404 aa9.84□□□□□ -0.83
COL6A3-210ENST00000473258 MAD1L1Q9Y6D9 718 aa9.84□□□□□ -0.83
COL6A3-210ENST00000473258 CCDC189A1A4V9 331 aa9.84□□□□□ -0.83
COL6A3-210ENST00000473258 GTPBP10A4D1E9 387 aaKnown RBP9.84□□□□□ -0.83
COL6A3-210ENST00000473258 GMNCA6NCL1 334 aa9.84□□□□□ -0.83
COL6A3-210ENST00000473258 GOLGA8RI6L899 631 aa9.84□□□□□ -0.83
COL6A3-210ENST00000473258 EXOC5O00471 708 aa9.84□□□□□ -0.83
COL6A3-210ENST00000473258 XPOTO43592 962 aaKnown RBP9.84□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms