RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 TRAK2O60296 914 aa14.79□□□□□ -0.04
VPS13D-205ENST00000473099 CTNND1O60716 968 aaKnown RBP14.79□□□□□ -0.04
VPS13D-205ENST00000473099 PRPF40AO75400 957 aaKnown RBP14.79□□□□□ -0.04
VPS13D-205ENST00000473099 PTPRFP10586 1907 aa14.79□□□□□ -0.04
VPS13D-205ENST00000473099 SUPT20HL1Q3ZLR7 823 aa14.79□□□□□ -0.04
VPS13D-205ENST00000473099 PARP14Q460N5 1801 aa14.79□□□□□ -0.04
VPS13D-205ENST00000473099 GALNT17Q6IS24 598 aa14.79□□□□□ -0.04
VPS13D-205ENST00000473099 USP17L2Q6R6M4 530 aa14.79□□□□□ -0.04
VPS13D-205ENST00000473099 USP50Q70EL3 339 aaPredicted RBP14.79□□□□□ -0.04
VPS13D-205ENST00000473099 GMCL1Q96IK5 515 aa14.79□□□□□ -0.04
VPS13D-205ENST00000473099 ZNF341Q9BYN7 854 aa14.79□□□□□ -0.04
VPS13D-205ENST00000473099 GOPCQ9HD26 462 aa14.79□□□□□ -0.04
VPS13D-205ENST00000473099 MTMR7Q9Y216 660 aa14.79□□□□□ -0.04
VPS13D-205ENST00000473099 CNPY2Q9Y2B0 182 aa14.79□□□□□ -0.04
VPS13D-205ENST00000473099 OTOFQ9HC10 1997 aa14.78□□□□□ -0.04
VPS13D-205ENST00000473099 PAPPA2Q9BXP8 1791 aa14.78□□□□□ -0.04
VPS13D-205ENST00000473099 IQCA1LA6NCM1 817 aa14.78□□□□□ -0.04
VPS13D-205ENST00000473099 GLTPD2A6NH11 291 aa14.78□□□□□ -0.04
VPS13D-205ENST00000473099 SLC1A4P43007 532 aa14.78□□□□□ -0.04
VPS13D-205ENST00000473099 CCDC96Q2M329 555 aa14.78□□□□□ -0.04
VPS13D-205ENST00000473099 KLHL40Q2TBA0 621 aa14.78□□□□□ -0.04
VPS13D-205ENST00000473099 FOXD4L6Q3SYB3 417 aaPredicted RBP14.78□□□□□ -0.04
VPS13D-205ENST00000473099 MYSM1Q5VVJ2 828 aa14.78□□□□□ -0.04
VPS13D-205ENST00000473099 SLFN13Q68D06 897 aa14.78□□□□□ -0.04
VPS13D-205ENST00000473099 FOXD4L3Q6VB84 417 aaPredicted RBP14.78□□□□□ -0.04
VPS13D-205ENST00000473099 CLEC10AQ8IUN9 316 aa14.78□□□□□ -0.04
VPS13D-205ENST00000473099 ZC3H15Q8WU90 426 aaKnown RBP14.78□□□□□ -0.04
VPS13D-205ENST00000473099 DCPSQ96C86 337 aaKnown RBP14.78□□□□□ -0.04
VPS13D-205ENST00000473099 SPATA32Q96LK8 384 aa14.78□□□□□ -0.04
VPS13D-205ENST00000473099 PHF20Q9BVI0 1012 aa14.78□□□□□ -0.04
VPS13D-205ENST00000473099 TMX2Q9Y320 296 aa14.78□□□□□ -0.04
VPS13D-205ENST00000473099 DDX49Q9Y6V7 483 aaKnown RBP14.78□□□□□ -0.04
VPS13D-205ENST00000473099 F5H6K3 240 aa14.77□□□□□ -0.05
VPS13D-205ENST00000473099 FIBPO43427 364 aa14.77□□□□□ -0.05
VPS13D-205ENST00000473099 CYTH3O43739 400 aa14.77□□□□□ -0.05
VPS13D-205ENST00000473099 SLURP2P0DP57 97 aa14.77□□□□□ -0.05
VPS13D-205ENST00000473099 KRT2P35908 639 aa14.77□□□□□ -0.05
VPS13D-205ENST00000473099 UBE2HP62256 183 aa14.77□□□□□ -0.05
VPS13D-205ENST00000473099 KLRC3Q07444 240 aa14.77□□□□□ -0.05
VPS13D-205ENST00000473099 RRP1BQ14684 758 aaKnown RBP14.77□□□□□ -0.05
VPS13D-205ENST00000473099 OTUD7BQ6GQQ9 843 aa14.77□□□□□ -0.05
VPS13D-205ENST00000473099 MIGA2Q7L4E1 593 aa14.77□□□□□ -0.05
VPS13D-205ENST00000473099 USP48Q86UV5 1035 aa14.77□□□□□ -0.05
VPS13D-205ENST00000473099 NOSTRINQ8IVI9 506 aa14.77□□□□□ -0.05
VPS13D-205ENST00000473099 DIS3L2Q8IYB7 885 aaKnown RBP14.77□□□□□ -0.05
VPS13D-205ENST00000473099 VPS54Q9P1Q0 977 aa14.77□□□□□ -0.05
VPS13D-205ENST00000473099 ASTN2O75129 1339 aaPredicted RBP14.76□□□□□ -0.05
VPS13D-205ENST00000473099 PHF20L1A8MW92 1017 aa14.76□□□□□ -0.05
VPS13D-205ENST00000473099 GOLGA8HP0CJ92 632 aa14.76□□□□□ -0.05
VPS13D-205ENST00000473099 HIRAP54198 1017 aaPredicted RBP14.76□□□□□ -0.05
VPS13D-205ENST00000473099 NLRP5P59047 1200 aa14.76□□□□□ -0.05
VPS13D-205ENST00000473099 PPP1R18Q6NYC8 613 aa14.76□□□□□ -0.05
VPS13D-205ENST00000473099 SIAH1Q8IUQ4 282 aa14.76□□□□□ -0.05
VPS13D-205ENST00000473099 SULF1Q8IWU6 871 aa14.76□□□□□ -0.05
VPS13D-205ENST00000473099 CDAN1Q8IWY9 1227 aa14.76□□□□□ -0.05
VPS13D-205ENST00000473099 LEO1Q8WVC0 666 aaPredicted RBP14.76□□□□□ -0.05
VPS13D-205ENST00000473099 GJB4Q9NTQ9 266 aa14.76□□□□□ -0.05
VPS13D-205ENST00000473099 POLR3EQ9NVU0 708 aa14.76□□□□□ -0.05
VPS13D-205ENST00000473099 BARHL2Q9NY43 387 aa14.76□□□□□ -0.05
VPS13D-205ENST00000473099 ZNF112Q9UJU3 913 aa14.76□□□□□ -0.05
VPS13D-205ENST00000473099 FRMPD2Q68DX3 1309 aaPredicted RBP14.75□□□□□ -0.05
VPS13D-205ENST00000473099 YEATS4O95619 227 aa14.75□□□□□ -0.05
VPS13D-205ENST00000473099 TRAF1Q13077 416 aa14.75□□□□□ -0.05
VPS13D-205ENST00000473099 RILPL1Q5EBL4 403 aa14.75□□□□□ -0.05
VPS13D-205ENST00000473099 NBPF12Q5TAG4 269 aaPredicted RBP14.75□□□□□ -0.05
VPS13D-205ENST00000473099 FAM173BQ6P4H8 233 aa14.75□□□□□ -0.05
VPS13D-205ENST00000473099 DAGLBQ8NCG7 672 aa14.75□□□□□ -0.05
VPS13D-205ENST00000473099 SYAP1Q96A49 352 aaPredicted RBP14.75□□□□□ -0.05
VPS13D-205ENST00000473099 GPCPD1Q9NPB8 672 aa14.75□□□□□ -0.05
VPS13D-205ENST00000473099 RTEL1Q9NZ71 1219 aa14.75□□□□□ -0.05
VPS13D-205ENST00000473099 RCOR1Q9UKL0 485 aa14.75□□□□□ -0.05
VPS13D-205ENST00000473099 KCNJ14Q9UNX9 436 aa14.75□□□□□ -0.05
VPS13D-205ENST00000473099 RBBP6Q7Z6E9 1792 aaKnown RBP14.75□□□□□ -0.05
VPS13D-205ENST00000473099 MYH7BA7E2Y1 1941 aa14.74□□□□□ -0.05
VPS13D-205ENST00000473099 PNMA6FA0A0J9YX94 578 aa14.74□□□□□ -0.05
VPS13D-205ENST00000473099 ESYT2A0FGR8 921 aa14.74□□□□□ -0.05
VPS13D-205ENST00000473099 GOLGA6L4A6NEF3 574 aa14.74□□□□□ -0.05
VPS13D-205ENST00000473099 BTBD18B2RXH4 712 aa14.74□□□□□ -0.05
VPS13D-205ENST00000473099 KIF28PB7ZC32 967 aa14.74□□□□□ -0.05
VPS13D-205ENST00000473099 UBE2Q2LH0YL09 131 aa14.74□□□□□ -0.05
VPS13D-205ENST00000473099 PLA2G6O60733 806 aa14.74□□□□□ -0.05
VPS13D-205ENST00000473099 NDUFB10O96000 172 aa14.74□□□□□ -0.05
VPS13D-205ENST00000473099 BMP3P12645 472 aa14.74□□□□□ -0.05
VPS13D-205ENST00000473099 GNA11P29992 359 aa14.74□□□□□ -0.05
VPS13D-205ENST00000473099 EPHX2P34913 555 aa14.74□□□□□ -0.05
VPS13D-205ENST00000473099 JAG1P78504 1218 aa14.74□□□□□ -0.05
VPS13D-205ENST00000473099 SHROOM1Q2M3G4 852 aaPredicted RBP14.74□□□□□ -0.05
VPS13D-205ENST00000473099 BTNL9Q6UXG8 535 aa14.74□□□□□ -0.05
VPS13D-205ENST00000473099 BICD2Q8TD16 824 aa14.74□□□□□ -0.05
VPS13D-205ENST00000473099 KCNG4Q8TDN1 519 aa14.74□□□□□ -0.05
VPS13D-205ENST00000473099 MTMR8Q96EF0 704 aa14.74□□□□□ -0.05
VPS13D-205ENST00000473099 VCPKMTQ9H867 229 aa14.74□□□□□ -0.05
VPS13D-205ENST00000473099 AS3MTQ9HBK9 375 aa14.74□□□□□ -0.05
VPS13D-205ENST00000473099 GDPD2Q9HCC8 539 aa14.74□□□□□ -0.05
VPS13D-205ENST00000473099 TFIP11Q9UBB9 837 aaKnown RBP14.74□□□□□ -0.05
VPS13D-205ENST00000473099 NOL7Q9UMY1 257 aaKnown RBP14.74□□□□□ -0.05
VPS13D-205ENST00000473099 hCG_1642624A0A1W2PR95 340 aa14.73□□□□□ -0.05
VPS13D-205ENST00000473099 STXBP3O00186 592 aa14.73□□□□□ -0.05
VPS13D-205ENST00000473099 BMP15O95972 392 aa14.73□□□□□ -0.05
VPS13D-205ENST00000473099 TRAPPC10P48553 1259 aa14.73□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms