RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 MAP3K5Q99683 1374 aa14.59□□□□□ -0.07
COL6A3-209ENST00000472056 BIRC3Q13489 604 aa14.59□□□□□ -0.07
COL6A3-209ENST00000472056 PLCB4Q15147 1175 aa14.59□□□□□ -0.07
COL6A3-209ENST00000472056 PDZD8Q8NEN9 1154 aa14.59□□□□□ -0.07
COL6A3-209ENST00000472056 CREB3O43889 395 aa14.59□□□□□ -0.07
COL6A3-209ENST00000472056 EEF1GP26641 437 aaKnown RBP14.59□□□□□ -0.07
COL6A3-209ENST00000472056 CFAP61Q8NHU2 1237 aa14.59□□□□□ -0.07
COL6A3-209ENST00000472056 MEIS3Q99687 375 aa14.59□□□□□ -0.07
COL6A3-209ENST00000472056 STX17P56962 302 aa14.59□□□□□ -0.07
COL6A3-209ENST00000472056 DISP3Q9P2K9 1392 aa14.58□□□□□ -0.07
COL6A3-209ENST00000472056 GJC1P36383 396 aa14.58□□□□□ -0.07
COL6A3-209ENST00000472056 SAAL1Q96ER3 474 aa14.58□□□□□ -0.07
COL6A3-209ENST00000472056 YY1AP1Q9H869 796 aa14.58□□□□□ -0.07
COL6A3-209ENST00000472056 MIS18AQ9NYP9 233 aa14.58□□□□□ -0.07
COL6A3-209ENST00000472056 DNM3Q9UQ16 869 aa14.58□□□□□ -0.07
COL6A3-209ENST00000472056 RIMS2Q9UQ26 1411 aa14.58□□□□□ -0.07
COL6A3-209ENST00000472056 CCNT1O60563 726 aaKnown RBP14.58□□□□□ -0.07
COL6A3-209ENST00000472056 APOEP02649 317 aa14.58□□□□□ -0.07
COL6A3-209ENST00000472056 CCDC92Q53HC0 331 aaPredicted RBP14.58□□□□□ -0.07
COL6A3-209ENST00000472056 PPP2R2CQ9Y2T4 447 aa14.58□□□□□ -0.07
COL6A3-209ENST00000472056 PACSIN2Q9UNF0 486 aaPredicted RBP14.58□□□□□ -0.08
COL6A3-209ENST00000472056 ZNF189O75820 626 aaPredicted RBP14.58□□□□□ -0.08
COL6A3-209ENST00000472056 PEX19P40855 299 aa14.58□□□□□ -0.08
COL6A3-209ENST00000472056 TRIM6Q9C030 488 aaPredicted RBP14.58□□□□□ -0.08
COL6A3-209ENST00000472056 TRPC6Q9Y210 931 aa14.58□□□□□ -0.08
COL6A3-209ENST00000472056 ARHGAP10A1A4S6 786 aa14.58□□□□□ -0.08
COL6A3-209ENST00000472056 PBKQ96KB5 322 aa14.58□□□□□ -0.08
COL6A3-209ENST00000472056 VPS16Q9H269 839 aa14.58□□□□□ -0.08
COL6A3-209ENST00000472056 A0A1B0GW55 424 aa14.58□□□□□ -0.08
COL6A3-209ENST00000472056 DUX4L2P0CJ85 424 aa14.58□□□□□ -0.08
COL6A3-209ENST00000472056 DUX4L3P0CJ86 424 aa14.58□□□□□ -0.08
COL6A3-209ENST00000472056 DUX4L4P0CJ87 422 aa14.58□□□□□ -0.08
COL6A3-209ENST00000472056 DUX4L5P0CJ88 424 aa14.58□□□□□ -0.08
COL6A3-209ENST00000472056 DUX4L6P0CJ89 424 aa14.58□□□□□ -0.08
COL6A3-209ENST00000472056 DUX4L7P0CJ90 424 aa14.58□□□□□ -0.08
COL6A3-209ENST00000472056 BPIFB4P59827 614 aa14.58□□□□□ -0.08
COL6A3-209ENST00000472056 PSMD6Q15008 389 aa14.58□□□□□ -0.08
COL6A3-209ENST00000472056 ICE2Q659A1 982 aa14.58□□□□□ -0.08
COL6A3-209ENST00000472056 DUX4Q9UBX2 424 aa14.58□□□□□ -0.08
COL6A3-209ENST00000472056 NOC2LQ9Y3T9 749 aaKnown RBP14.58□□□□□ -0.08
COL6A3-209ENST00000472056 PCYT1AP49585 367 aa14.58□□□□□ -0.08
COL6A3-209ENST00000472056 ZNF274Q96GC6 653 aaPredicted RBP14.58□□□□□ -0.08
COL6A3-209ENST00000472056 SH3GL3Q99963 347 aa14.58□□□□□ -0.08
COL6A3-209ENST00000472056 C2CD5Q86YS7 1000 aa14.57□□□□□ -0.08
COL6A3-209ENST00000472056 N4BP2L2Q92802 583 aaPredicted RBP14.57□□□□□ -0.08
COL6A3-209ENST00000472056 CALCRLQ16602 461 aa14.57□□□□□ -0.08
COL6A3-209ENST00000472056 IKBKBO14920 756 aa14.57□□□□□ -0.08
COL6A3-209ENST00000472056 RASA3Q14644 834 aa14.57□□□□□ -0.08
COL6A3-209ENST00000472056 PAWRQ96IZ0 340 aaKnown RBP14.57□□□□□ -0.08
COL6A3-209ENST00000472056 THUMPD2Q9BTF0 503 aaKnown RBP14.57□□□□□ -0.08
COL6A3-209ENST00000472056 CARD10Q9BWT7 1032 aa14.57□□□□□ -0.08
COL6A3-209ENST00000472056 MYH8P13535 1937 aa14.57□□□□□ -0.08
COL6A3-209ENST00000472056 TTC38Q5R3I4 469 aa14.57□□□□□ -0.08
COL6A3-209ENST00000472056 RINT1Q6NUQ1 792 aa14.57□□□□□ -0.08
COL6A3-209ENST00000472056 GADD45GIP1Q8TAE8 222 aaPredicted RBP14.57□□□□□ -0.08
COL6A3-209ENST00000472056 HOOK2Q96ED9 719 aa14.57□□□□□ -0.08
COL6A3-209ENST00000472056 SPC25Q9HBM1 224 aa14.57□□□□□ -0.08
COL6A3-209ENST00000472056 MAST3O60307 1309 aa14.57□□□□□ -0.08
COL6A3-209ENST00000472056 POLR2BP30876 1174 aaKnown RBP14.57□□□□□ -0.08
COL6A3-209ENST00000472056 MTX1Q13505 466 aa14.57□□□□□ -0.08
COL6A3-209ENST00000472056 LONRF2Q1L5Z9 754 aa14.57□□□□□ -0.08
COL6A3-209ENST00000472056 CASC4Q6P4E1 433 aa14.57□□□□□ -0.08
COL6A3-209ENST00000472056 MICAL3Q7RTP6 2002 aa14.57□□□□□ -0.08
COL6A3-209ENST00000472056 BRD1O95696 1058 aa14.57□□□□□ -0.08
COL6A3-209ENST00000472056 KCNA4P22459 653 aa14.57□□□□□ -0.08
COL6A3-209ENST00000472056 HADHQ16836 314 aaKnown RBP14.57□□□□□ -0.08
COL6A3-209ENST00000472056 MMEL1Q495T6 779 aa14.57□□□□□ -0.08
COL6A3-209ENST00000472056 BATF3Q9NR55 127 aa14.57□□□□□ -0.08
COL6A3-209ENST00000472056 SGSM2O43147 1006 aa14.56□□□□□ -0.08
COL6A3-209ENST00000472056 TTC6Q86TZ1 520 aa14.56□□□□□ -0.08
COL6A3-209ENST00000472056 KCNJ18B7U540 433 aa14.56□□□□□ -0.08
COL6A3-209ENST00000472056 KCNJ12Q14500 433 aa14.56□□□□□ -0.08
COL6A3-209ENST00000472056 NBPF20Q3BBV1 942 aa14.56□□□□□ -0.08
COL6A3-209ENST00000472056 A0A1W2PQ27 194 aa14.56□□□□□ -0.08
COL6A3-209ENST00000472056 A0A1W2PQ64 194 aa14.56□□□□□ -0.08
COL6A3-209ENST00000472056 A0A1W2PQD8 194 aa14.56□□□□□ -0.08
COL6A3-209ENST00000472056 CATSPER1Q8NEC5 780 aa14.56□□□□□ -0.08
COL6A3-209ENST00000472056 XPO4Q9C0E2 1151 aaKnown RBP14.56□□□□□ -0.08
COL6A3-209ENST00000472056 VIRMAQ69YN4 1812 aaKnown RBP14.56□□□□□ -0.08
COL6A3-209ENST00000472056 E9PMD0 336 aa14.56□□□□□ -0.08
COL6A3-209ENST00000472056 LIG3P49916 1009 aa14.56□□□□□ -0.08
COL6A3-209ENST00000472056 ADCY2Q08462 1091 aa14.56□□□□□ -0.08
COL6A3-209ENST00000472056 AKAP4Q5JQC9 854 aa14.56□□□□□ -0.08
COL6A3-209ENST00000472056 TMCO5AQ8N6Q1 288 aa14.56□□□□□ -0.08
COL6A3-209ENST00000472056 C14orf93Q9H972 538 aaKnown RBP14.56□□□□□ -0.08
COL6A3-209ENST00000472056 NDE1Q9NXR1 346 aa14.56□□□□□ -0.08
COL6A3-209ENST00000472056 CFAP73A6NFT4 308 aa14.56□□□□□ -0.08
COL6A3-209ENST00000472056 MAPK13O15264 365 aa14.56□□□□□ -0.08
COL6A3-209ENST00000472056 RAP1GDS1P52306 607 aa14.56□□□□□ -0.08
COL6A3-209ENST00000472056 SEMA3FQ13275 785 aa14.56□□□□□ -0.08
COL6A3-209ENST00000472056 NONOQ15233 471 aaKnown RBP eCLIP14.56□□□□□ -0.08
COL6A3-209ENST00000472056 AOC3Q16853 763 aa14.56□□□□□ -0.08
COL6A3-209ENST00000472056 DENND2AQ9ULE3 1009 aa14.56□□□□□ -0.08
COL6A3-209ENST00000472056 URB2Q14146 1524 aaKnown RBP14.56□□□□□ -0.08
COL6A3-209ENST00000472056 PTCD1O75127 700 aaKnown RBP14.56□□□□□ -0.08
COL6A3-209ENST00000472056 KRT39Q6A163 491 aa14.56□□□□□ -0.08
COL6A3-209ENST00000472056 HACE1Q8IYU2 909 aa14.56□□□□□ -0.08
COL6A3-209ENST00000472056 PBRM1Q86U86 1689 aa14.56□□□□□ -0.08
COL6A3-209ENST00000472056 DIXDC1Q155Q3 683 aa14.56□□□□□ -0.08
COL6A3-209ENST00000472056 TEDDM1Q5T9Z0 273 aa14.56□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms