RNA–Protein interactions for RNA: ENST00000471439.1

VPS13A-210, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 510 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-210ENST00000471439 CTTNBP2Q8WZ74 1663 aa6.43□□□□□ -1.38
VPS13A-210ENST00000471439 KRTAP9-6A0A140TA67 174 aa6.43□□□□□ -1.38
VPS13A-210ENST00000471439 PRR33A8MZF0 331 aa6.43□□□□□ -1.38
VPS13A-210ENST00000471439 LMNB1P20700 586 aa6.43□□□□□ -1.38
VPS13A-210ENST00000471439 IRAK1P51617 712 aa6.43□□□□□ -1.38
VPS13A-210ENST00000471439 FAM160A1Q05DH4 1040 aa6.43□□□□□ -1.38
VPS13A-210ENST00000471439 LDLRAD1Q5T700 205 aa6.43□□□□□ -1.38
VPS13A-210ENST00000471439 PRAMEF13Q5VWM6 474 aa6.43□□□□□ -1.38
VPS13A-210ENST00000471439 BRINP3Q76B58 766 aa6.43□□□□□ -1.38
VPS13A-210ENST00000471439 ZNF507Q8TCN5 953 aa6.43□□□□□ -1.38
VPS13A-210ENST00000471439 NETO1Q8TDF5 533 aa6.43□□□□□ -1.38
VPS13A-210ENST00000471439 RHOVQ96L33 236 aa6.43□□□□□ -1.38
VPS13A-210ENST00000471439 MIPEPQ99797 713 aa6.43□□□□□ -1.38
VPS13A-210ENST00000471439 SYT17Q9BSW7 474 aa6.43□□□□□ -1.38
VPS13A-210ENST00000471439 NOC4LQ9BVI4 516 aaKnown RBP6.43□□□□□ -1.38
VPS13A-210ENST00000471439 COPRSQ9NQ92 184 aa6.43□□□□□ -1.38
VPS13A-210ENST00000471439 WDR90Q96KV7 1748 aa6.42□□□□□ -1.38
VPS13A-210ENST00000471439 E9PSI1 815 aa6.42□□□□□ -1.38
VPS13A-210ENST00000471439 LRIG2O94898 1065 aa6.42□□□□□ -1.38
VPS13A-210ENST00000471439 F13A1P00488 732 aa6.42□□□□□ -1.38
VPS13A-210ENST00000471439 PF4P02776 101 aa6.42□□□□□ -1.38
VPS13A-210ENST00000471439 CD8BP10966 210 aa6.42□□□□□ -1.38
VPS13A-210ENST00000471439 TJP2Q9UDY2 1190 aa6.42□□□□□ -1.38
VPS13A-210ENST00000471439 SNCAIPQ9Y6H5 919 aa6.42□□□□□ -1.38
VPS13A-210ENST00000471439 TNS1Q9HBL0 1735 aaKnown RBP6.42□□□□□ -1.38
VPS13A-210ENST00000471439 TAL1P17542 331 aaPredicted RBP6.41□□□□□ -1.38
VPS13A-210ENST00000471439 CAMK2GQ13555 558 aaPredicted RBP6.41□□□□□ -1.38
VPS13A-210ENST00000471439 TSNAXIP1Q2TAA8 658 aa6.41□□□□□ -1.38
VPS13A-210ENST00000471439 ARHGAP27Q6ZUM4 889 aa6.41□□□□□ -1.38
VPS13A-210ENST00000471439 KRT27Q7Z3Y8 459 aa6.41□□□□□ -1.38
VPS13A-210ENST00000471439 SPACA3Q8IXA5 215 aa6.41□□□□□ -1.38
VPS13A-210ENST00000471439 CAMKK2Q96RR4 588 aa6.41□□□□□ -1.38
VPS13A-210ENST00000471439 FOXQ1Q9C009 403 aa6.41□□□□□ -1.38
VPS13A-210ENST00000471439 ADAMTS6Q9UKP5 1117 aa6.41□□□□□ -1.38
VPS13A-210ENST00000471439 SLC5A6Q9Y289 635 aa6.41□□□□□ -1.38
VPS13A-210ENST00000471439 DISP2A7MBM2 1401 aa6.41□□□□□ -1.38
VPS13A-210ENST00000471439 PZPP20742 1482 aa6.41□□□□□ -1.38
VPS13A-210ENST00000471439 NKTRP30414 1462 aaKnown RBP6.41□□□□□ -1.38
VPS13A-210ENST00000471439 NUP188Q5SRE5 1749 aa6.4□□□□□ -1.38
VPS13A-210ENST00000471439 SIPA1L2Q9P2F8 1722 aaPredicted RBP6.4□□□□□ -1.38
VPS13A-210ENST00000471439 MINDY4BA8MYZ0 360 aa6.4□□□□□ -1.38
VPS13A-210ENST00000471439 PGRP06401 933 aa6.4□□□□□ -1.38
VPS13A-210ENST00000471439 RPL6Q02878 288 aaKnown RBP6.4□□□□□ -1.38
VPS13A-210ENST00000471439 IFI16Q16666 785 aaKnown RBP6.4□□□□□ -1.38
VPS13A-210ENST00000471439 NKPD1Q17RQ9 610 aa6.4□□□□□ -1.38
VPS13A-210ENST00000471439 CBLL1Q75N03 491 aa6.4□□□□□ -1.38
VPS13A-210ENST00000471439 FBXO27Q8NI29 283 aa6.4□□□□□ -1.38
VPS13A-210ENST00000471439 ACSF2Q96CM8 615 aaPredicted RBP6.4□□□□□ -1.38
VPS13A-210ENST00000471439 BACH2Q9BYV9 841 aa6.4□□□□□ -1.38
VPS13A-210ENST00000471439 TNKS2Q9H2K2 1166 aa6.4□□□□□ -1.38
VPS13A-210ENST00000471439 KBTBD4Q9NVX7 518 aa6.4□□□□□ -1.38
VPS13A-210ENST00000471439 ATP10DQ9P241 1426 aa6.4□□□□□ -1.39
VPS13A-210ENST00000471439 NCOA2Q15596 1464 aa6.4□□□□□ -1.39
VPS13A-210ENST00000471439 UBR1Q8IWV7 1749 aa6.39□□□□□ -1.39
VPS13A-210ENST00000471439 FAM221AA4D161 298 aa6.39□□□□□ -1.39
VPS13A-210ENST00000471439 GRIN3BO60391 1043 aa6.39□□□□□ -1.39
VPS13A-210ENST00000471439 CILPO75339 1184 aa6.39□□□□□ -1.39
VPS13A-210ENST00000471439 GARTP22102 1010 aa6.39□□□□□ -1.39
VPS13A-210ENST00000471439 VAMP1P23763 118 aa6.39□□□□□ -1.39
VPS13A-210ENST00000471439 GBP2P32456 591 aaPredicted RBP6.39□□□□□ -1.39
VPS13A-210ENST00000471439 AOC3Q16853 763 aa6.39□□□□□ -1.39
VPS13A-210ENST00000471439 HID1Q8IV36 788 aa6.39□□□□□ -1.39
VPS13A-210ENST00000471439 KCT2Q8NC54 265 aa6.39□□□□□ -1.39
VPS13A-210ENST00000471439 FBXL18Q96ME1 805 aa6.39□□□□□ -1.39
VPS13A-210ENST00000471439 TMEM74Q96NL1 305 aa6.39□□□□□ -1.39
VPS13A-210ENST00000471439 PRDM7Q9NQW5 492 aa6.39□□□□□ -1.39
VPS13A-210ENST00000471439 PRDM5Q9NQX1 630 aaPredicted RBP6.39□□□□□ -1.39
VPS13A-210ENST00000471439 IGSF5Q9NSI5 407 aa6.39□□□□□ -1.39
VPS13A-210ENST00000471439 TPX2Q9ULW0 747 aaKnown RBP6.39□□□□□ -1.39
VPS13A-210ENST00000471439 PLXNC1O60486 1568 aa6.39□□□□□ -1.39
VPS13A-210ENST00000471439 MROH1Q8NDA8 1641 aa6.39□□□□□ -1.39
VPS13A-210ENST00000471439 RREB1Q92766 1687 aa6.39□□□□□ -1.39
VPS13A-210ENST00000471439 TNKS1BP1Q9C0C2 1729 aaKnown RBP6.39□□□□□ -1.39
VPS13A-210ENST00000471439 CUL9Q8IWT3 2517 aa6.38□□□□□ -1.39
VPS13A-210ENST00000471439 UPK3BL1B0FP48 263 aa6.38□□□□□ -1.39
VPS13A-210ENST00000471439 UPK3BL2E5RIL1 263 aa6.38□□□□□ -1.39
VPS13A-210ENST00000471439 CST3P01034 146 aaPredicted RBP6.38□□□□□ -1.39
VPS13A-210ENST00000471439 CAP2P40123 477 aa6.38□□□□□ -1.39
VPS13A-210ENST00000471439 HTRA3P83110 453 aa6.38□□□□□ -1.39
VPS13A-210ENST00000471439 LMNB2Q03252 620 aa6.38□□□□□ -1.39
VPS13A-210ENST00000471439 PRKCQQ04759 706 aa6.38□□□□□ -1.39
VPS13A-210ENST00000471439 PLCL1Q15111 1095 aa6.38□□□□□ -1.39
VPS13A-210ENST00000471439 GPR162Q16538 588 aa6.38□□□□□ -1.39
VPS13A-210ENST00000471439 LETMD1Q6P1Q0 360 aa6.38□□□□□ -1.39
VPS13A-210ENST00000471439 ERMP1Q7Z2K6 904 aa6.38□□□□□ -1.39
VPS13A-210ENST00000471439 DDX17Q92841 729 aaKnown RBP6.38□□□□□ -1.39
VPS13A-210ENST00000471439 HRASLS5Q96KN8 279 aa6.38□□□□□ -1.39
VPS13A-210ENST00000471439 KRTAP4-12Q9BQ66 201 aa6.38□□□□□ -1.39
VPS13A-210ENST00000471439 MKNK2Q9HBH9 465 aa6.38□□□□□ -1.39
VPS13A-210ENST00000471439 GTF2IRD1Q9UHL9 959 aa6.38□□□□□ -1.39
VPS13A-210ENST00000471439 POLR3KQ9Y2Y1 108 aaPredicted RBP6.38□□□□□ -1.39
VPS13A-210ENST00000471439 PTCH1Q13635 1447 aa6.38□□□□□ -1.39
VPS13A-210ENST00000471439 ARHGAP5Q13017 1502 aa6.38□□□□□ -1.39
VPS13A-210ENST00000471439 DLC1Q96QB1 1528 aa6.38□□□□□ -1.39
VPS13A-210ENST00000471439 MARF1Q9Y4F3 1742 aaKnown RBP6.37□□□□□ -1.39
VPS13A-210ENST00000471439 ASXL1Q8IXJ9 1541 aa6.37□□□□□ -1.39
VPS13A-210ENST00000471439 TLR3O15455 904 aaKnown RBP6.37□□□□□ -1.39
VPS13A-210ENST00000471439 DNAJA2O60884 412 aa6.37□□□□□ -1.39
VPS13A-210ENST00000471439 ZNF792Q3KQV3 632 aa6.37□□□□□ -1.39
VPS13A-210ENST00000471439 SNAP47Q5SQN1 464 aa6.37□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 102.7 ms