RNA–Protein interactions for RNA: ENST00000471342.1

SF3A1-207, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 459 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-207ENST00000471342 GOLGA8BA8MQT2 603 aa11.56□□□□□ -0.56
SF3A1-207ENST00000471342 ZBTB43O43298 467 aa11.56□□□□□ -0.56
SF3A1-207ENST00000471342 EDIL3O43854 480 aa11.56□□□□□ -0.56
SF3A1-207ENST00000471342 ST18O60284 1047 aa11.56□□□□□ -0.56
SF3A1-207ENST00000471342 PPFIA3O75145 1194 aa11.56□□□□□ -0.56
SF3A1-207ENST00000471342 SLC10A3P09131 477 aa11.56□□□□□ -0.56
SF3A1-207ENST00000471342 SMARCA1P28370 1054 aa11.56□□□□□ -0.56
SF3A1-207ENST00000471342 MCM2P49736 904 aa11.56□□□□□ -0.56
SF3A1-207ENST00000471342 MICU3Q86XE3 530 aa11.56□□□□□ -0.56
SF3A1-207ENST00000471342 SPICE1Q8N0Z3 855 aa11.56□□□□□ -0.56
SF3A1-207ENST00000471342 CHMP4CQ96CF2 233 aa11.56□□□□□ -0.56
SF3A1-207ENST00000471342 ZSCAN31Q96LW9 406 aaPredicted RBP11.56□□□□□ -0.56
SF3A1-207ENST00000471342 JMJD4Q9H9V9 463 aa11.56□□□□□ -0.56
SF3A1-207ENST00000471342 SH2B1Q9NRF2 756 aaPredicted RBP11.56□□□□□ -0.56
SF3A1-207ENST00000471342 GJB4Q9NTQ9 266 aa11.56□□□□□ -0.56
SF3A1-207ENST00000471342 FRMPD2Q68DX3 1309 aaPredicted RBP11.56□□□□□ -0.56
SF3A1-207ENST00000471342 RASSF10A6NK89 507 aa11.55□□□□□ -0.56
SF3A1-207ENST00000471342 USP17L10C9JJH3 530 aa11.55□□□□□ -0.56
SF3A1-207ENST00000471342 KLRF2D3W0D1 207 aa11.55□□□□□ -0.56
SF3A1-207ENST00000471342 OPLAHO14841 1288 aa11.55□□□□□ -0.56
SF3A1-207ENST00000471342 PEX10O60683 326 aa11.55□□□□□ -0.56
SF3A1-207ENST00000471342 CNMDO75829 334 aa11.55□□□□□ -0.56
SF3A1-207ENST00000471342 TAL1P17542 331 aaPredicted RBP11.55□□□□□ -0.56
SF3A1-207ENST00000471342 HOXA7P31268 230 aaPredicted RBP11.55□□□□□ -0.56
SF3A1-207ENST00000471342 SLC16A2P36021 539 aa11.55□□□□□ -0.56
SF3A1-207ENST00000471342 HMGCS2P54868 508 aa11.55□□□□□ -0.56
SF3A1-207ENST00000471342 HTRA3P83110 453 aa11.55□□□□□ -0.56
SF3A1-207ENST00000471342 PKP1Q13835 747 aa11.55□□□□□ -0.56
SF3A1-207ENST00000471342 FAM83BQ5T0W9 1011 aa11.55□□□□□ -0.56
SF3A1-207ENST00000471342 CATSPERGQ6ZRH7 1159 aa11.55□□□□□ -0.56
SF3A1-207ENST00000471342 KCTD1Q719H9 257 aa11.55□□□□□ -0.56
SF3A1-207ENST00000471342 C2orf69Q8N8R5 385 aa11.55□□□□□ -0.56
SF3A1-207ENST00000471342 DCAF4Q8WV16 495 aa11.55□□□□□ -0.56
SF3A1-207ENST00000471342 PHKBQ93100 1093 aa11.55□□□□□ -0.56
SF3A1-207ENST00000471342 OTUD5Q96G74 571 aa11.55□□□□□ -0.56
SF3A1-207ENST00000471342 INTS4Q96HW7 963 aaKnown RBP11.55□□□□□ -0.56
SF3A1-207ENST00000471342 P2RX7Q99572 595 aaKnown RBP11.55□□□□□ -0.56
SF3A1-207ENST00000471342 SPZ1Q9BXG8 430 aa11.55□□□□□ -0.56
SF3A1-207ENST00000471342 KAT14Q9H8E8 782 aa11.55□□□□□ -0.56
SF3A1-207ENST00000471342 ADGRA2Q96PE1 1338 aa11.55□□□□□ -0.56
SF3A1-207ENST00000471342 TRPM7Q96QT4 1865 aa11.55□□□□□ -0.56
SF3A1-207ENST00000471342 PTPRFP10586 1907 aa11.54□□□□□ -0.56
SF3A1-207ENST00000471342 hCG_1642624A0A1W2PR95 340 aa11.54□□□□□ -0.56
SF3A1-207ENST00000471342 CCDC69A6NI79 296 aa11.54□□□□□ -0.56
SF3A1-207ENST00000471342 TMEM88BA6NKF7 163 aa11.54□□□□□ -0.56
SF3A1-207ENST00000471342 GOLGA8AA7E2F4 631 aa11.54□□□□□ -0.56
SF3A1-207ENST00000471342 C19orf81C9J6K1 198 aa11.54□□□□□ -0.56
SF3A1-207ENST00000471342 IGF2BP3O00425 579 aaKnown RBP eCLIP11.54□□□□□ -0.56
SF3A1-207ENST00000471342 NF2P35240 595 aa11.54□□□□□ -0.56
SF3A1-207ENST00000471342 METAP2P50579 478 aaKnown RBP eCLIP11.54□□□□□ -0.561e-8■■□□□ 11.5
SF3A1-207ENST00000471342 HUNKP57058 714 aa11.54□□□□□ -0.56
SF3A1-207ENST00000471342 MAPK8IP2Q13387 824 aaPredicted RBP11.54□□□□□ -0.56
SF3A1-207ENST00000471342 SART3Q15020 963 aaKnown RBP11.54□□□□□ -0.56
SF3A1-207ENST00000471342 ZYXQ15942 572 aaKnown RBP11.54□□□□□ -0.56
SF3A1-207ENST00000471342 RTN1Q16799 776 aa11.54□□□□□ -0.56
SF3A1-207ENST00000471342 ADGRF4Q8IZF3 695 aa11.54□□□□□ -0.56
SF3A1-207ENST00000471342 FAM43AQ8N2R8 423 aa11.54□□□□□ -0.56
SF3A1-207ENST00000471342 TRIM34Q9BYJ4 488 aa11.54□□□□□ -0.56
SF3A1-207ENST00000471342 SLKQ9H2G2 1235 aaPredicted RBP11.54□□□□□ -0.56
SF3A1-207ENST00000471342 PICK1Q9NRD5 415 aa11.54□□□□□ -0.56
SF3A1-207ENST00000471342 LOC285556D6RIA3 1793 aa11.54□□□□□ -0.56
SF3A1-207ENST00000471342 BTBD19C9JJ37 291 aa11.53□□□□□ -0.56
SF3A1-207ENST00000471342 WDR46O15213 610 aaKnown RBP11.53□□□□□ -0.56
SF3A1-207ENST00000471342 PRPF3O43395 683 aaKnown RBP11.53□□□□□ -0.56
SF3A1-207ENST00000471342 FMNL1O95466 1100 aaPredicted RBP11.53□□□□□ -0.56
SF3A1-207ENST00000471342 APLP1P51693 650 aa11.53□□□□□ -0.56
SF3A1-207ENST00000471342 C1QTNF8P60827 252 aa11.53□□□□□ -0.56
SF3A1-207ENST00000471342 SNAP25P60880 206 aa11.53□□□□□ -0.56
SF3A1-207ENST00000471342 CAP1Q01518 475 aa11.53□□□□□ -0.56
SF3A1-207ENST00000471342 ATP2B2Q01814 1243 aa11.53□□□□□ -0.56
SF3A1-207ENST00000471342 RGMBQ6NW40 437 aa11.53□□□□□ -0.56
SF3A1-207ENST00000471342 CATIPQ7Z7H3 387 aa11.53□□□□□ -0.56
SF3A1-207ENST00000471342 NUP133Q8WUM0 1156 aa11.53□□□□□ -0.56
SF3A1-207ENST00000471342 LPAR1Q92633 364 aa11.53□□□□□ -0.56
SF3A1-207ENST00000471342 SLC10A4Q96EP9 437 aa11.53□□□□□ -0.56
SF3A1-207ENST00000471342 LLPHQ9BRT6 129 aaKnown RBP11.53□□□□□ -0.56
SF3A1-207ENST00000471342 ARHGEF10LQ9HCE6 1279 aa11.53□□□□□ -0.56
SF3A1-207ENST00000471342 GPCPD1Q9NPB8 672 aa11.53□□□□□ -0.56
SF3A1-207ENST00000471342 CREBZFQ9NS37 354 aa11.53□□□□□ -0.56
SF3A1-207ENST00000471342 PRR12Q9ULL5 1215 aa11.53□□□□□ -0.56
SF3A1-207ENST00000471342 CSADQ9Y600 493 aa11.53□□□□□ -0.56
SF3A1-207ENST00000471342 ERICH2A1L162 156 aa11.52□□□□□ -0.57
SF3A1-207ENST00000471342 PTPDC1A2A3K4 754 aa11.52□□□□□ -0.57
SF3A1-207ENST00000471342 SPDYE16A6NNV3 312 aaPredicted RBP11.52□□□□□ -0.57
SF3A1-207ENST00000471342 M0R2N6 131 aa11.52□□□□□ -0.57
SF3A1-207ENST00000471342 CALM1P0DP23 149 aa11.52□□□□□ -0.57
SF3A1-207ENST00000471342 CALM2P0DP24 149 aa11.52□□□□□ -0.57
SF3A1-207ENST00000471342 CALM3P0DP25 149 aa11.52□□□□□ -0.57
SF3A1-207ENST00000471342 ZBTB48P10074 688 aaPredicted RBP11.52□□□□□ -0.57
SF3A1-207ENST00000471342 BMP3P12645 472 aa11.52□□□□□ -0.57
SF3A1-207ENST00000471342 DSG3P32926 999 aa11.52□□□□□ -0.57
SF3A1-207ENST00000471342 PPP2R5BQ15173 497 aa11.52□□□□□ -0.57
SF3A1-207ENST00000471342 ASPRV1Q53RT3 343 aa11.52□□□□□ -0.57
SF3A1-207ENST00000471342 PPP4R3BQ5MIZ7 849 aa11.52□□□□□ -0.57
SF3A1-207ENST00000471342 LBX2Q6XYB7 198 aa11.52□□□□□ -0.57
SF3A1-207ENST00000471342 NFXL1Q6ZNB6 911 aa11.52□□□□□ -0.57
SF3A1-207ENST00000471342 PROCA1Q8NCQ7 364 aaPredicted RBP11.52□□□□□ -0.57
SF3A1-207ENST00000471342 IPO9Q96P70 1041 aaKnown RBP11.52□□□□□ -0.57
SF3A1-207ENST00000471342 PIGSQ96S52 555 aa11.52□□□□□ -0.57
SF3A1-207ENST00000471342 RANBP17Q9H2T7 1088 aaKnown RBP11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms