RNA–Protein interactions for RNA: ENST00000470531.5

CHD3-208, Transcript of chromodomain helicase DNA binding protein 3, human

TSL 2

Gene CHD3, Length 3,744 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHD3-208	ENST00000470531	NBPF5P	Q86XG9	351 aa	Predicted RBP	12	□□□□□ -0.49
CHD3-208	ENST00000470531	SLC44A5	Q8NCS7	719 aa		12	□□□□□ -0.49
CHD3-208	ENST00000470531	GBP3	Q9H0R5	595 aa		12	□□□□□ -0.49
CHD3-208	ENST00000470531	LY9	Q9HBG7	655 aa		12	□□□□□ -0.49
CHD3-208	ENST00000470531	BIN2	Q9UBW5	565 aa	Predicted RBP	12	□□□□□ -0.49
CHD3-208	ENST00000470531	STX10	O60499	249 aa		11.99	□□□□□ -0.49
CHD3-208	ENST00000470531	REXO1L1P	Q8IX06	675 aa		11.99	□□□□□ -0.49
CHD3-208	ENST00000470531	UHMK1	Q8TAS1	419 aa	Known RBP	11.99	□□□□□ -0.49
CHD3-208	ENST00000470531	CTAGE1	Q96RT6	745 aa		11.99	□□□□□ -0.49
CHD3-208	ENST00000470531	CEP89	Q96ST8	783 aa		11.99	□□□□□ -0.49
CHD3-208	ENST00000470531	PCDH11X	Q9BZA7	1347 aa		11.99	□□□□□ -0.49
CHD3-208	ENST00000470531	PCDH11Y	Q9BZA8	1340 aa		11.99	□□□□□ -0.49
CHD3-208	ENST00000470531	ITSN1	Q15811	1721 aa		11.99	□□□□□ -0.49
CHD3-208	ENST00000470531	TULP2	O00295	520 aa		11.99	□□□□□ -0.49
CHD3-208	ENST00000470531	KRT86	O43790	486 aa		11.99	□□□□□ -0.49
CHD3-208	ENST00000470531	USO1	O60763	962 aa	Known RBP	11.99	□□□□□ -0.49
CHD3-208	ENST00000470531	SET	Q01105	290 aa	Predicted RBP	11.99	□□□□□ -0.49
CHD3-208	ENST00000470531	RRAGA	Q7L523	313 aa		11.99	□□□□□ -0.49
CHD3-208	ENST00000470531	MYO6	Q9UM54	1294 aa		11.99	□□□□□ -0.49
CHD3-208	ENST00000470531	PXDN	Q92626	1479 aa		11.99	□□□□□ -0.49
CHD3-208	ENST00000470531	EVX2	Q03828	476 aa		11.99	□□□□□ -0.49
CHD3-208	ENST00000470531	CHRND	Q07001	517 aa		11.99	□□□□□ -0.49
CHD3-208	ENST00000470531	TBC1D10B	Q4KMP7	808 aa	Predicted RBP	11.99	□□□□□ -0.49
CHD3-208	ENST00000470531	PAGE5	Q96GU1	130 aa		11.99	□□□□□ -0.49
CHD3-208	ENST00000470531	EPN1	Q9Y6I3	576 aa	Predicted RBP	11.99	□□□□□ -0.49
CHD3-208	ENST00000470531	USP17L8	P0C7I0	530 aa		11.98	□□□□□ -0.49
CHD3-208	ENST00000470531	PLCD1	P51178	756 aa		11.98	□□□□□ -0.49
CHD3-208	ENST00000470531	VSNL1	P62760	191 aa		11.98	□□□□□ -0.49
CHD3-208	ENST00000470531	KRT31	Q15323	416 aa		11.98	□□□□□ -0.49
CHD3-208	ENST00000470531	CRACR2B	Q8N4Y2	399 aa	Predicted RBP	11.98	□□□□□ -0.49
CHD3-208	ENST00000470531	NOA1	Q8NC60	698 aa	Known RBP	11.98	□□□□□ -0.49
CHD3-208	ENST00000470531	TGFBRAP1	Q8WUH2	860 aa		11.98	□□□□□ -0.49
CHD3-208	ENST00000470531	RIMBP3C	A6NJZ7	1639 aa		11.98	□□□□□ -0.49
CHD3-208	ENST00000470531	RIMBP3B	A6NNM3	1639 aa		11.98	□□□□□ -0.49
CHD3-208	ENST00000470531	RIMBP3	Q9UFD9	1639 aa		11.98	□□□□□ -0.49
CHD3-208	ENST00000470531	ESYT3	A0FGR9	886 aa		11.98	□□□□□ -0.49
CHD3-208	ENST00000470531	USP17L3	A6NCW0	530 aa		11.98	□□□□□ -0.49
CHD3-208	ENST00000470531	USP17L4	A6NCW7	530 aa		11.98	□□□□□ -0.49
CHD3-208	ENST00000470531	CYLC1	P35663	651 aa	Predicted RBP	11.98	□□□□□ -0.49
CHD3-208	ENST00000470531	CCT5	P48643	541 aa		11.98	□□□□□ -0.49
CHD3-208	ENST00000470531	DIXDC1	Q155Q3	683 aa		11.98	□□□□□ -0.49
CHD3-208	ENST00000470531	CT47A1	Q5JQC4	288 aa	Predicted RBP	11.98	□□□□□ -0.49
CHD3-208	ENST00000470531	SPATA1	Q5VX52	437 aa		11.98	□□□□□ -0.49
CHD3-208	ENST00000470531	RESP18	Q5W5W9	173 aa		11.98	□□□□□ -0.49
CHD3-208	ENST00000470531	USP17L1	Q7RTZ2	530 aa		11.98	□□□□□ -0.49
CHD3-208	ENST00000470531	SRGAP1	Q7Z6B7	1085 aa		11.98	□□□□□ -0.49
CHD3-208	ENST00000470531	TMTC2	Q8N394	836 aa		11.98	□□□□□ -0.49
CHD3-208	ENST00000470531	CRNKL1	Q9BZJ0	848 aa	Known RBP	11.98	□□□□□ -0.49
CHD3-208	ENST00000470531	BMP2K	Q9NSY1	1161 aa	Predicted RBP	11.98	□□□□□ -0.49
CHD3-208	ENST00000470531	FRMPD2	Q68DX3	1309 aa	Predicted RBP	11.98	□□□□□ -0.49
CHD3-208	ENST00000470531	ADAMTS13	Q76LX8	1427 aa		11.98	□□□□□ -0.49
CHD3-208	ENST00000470531	GOLGA6L10	A6NI86	522 aa		11.98	□□□□□ -0.49
CHD3-208	ENST00000470531	TRAF5	O00463	557 aa		11.98	□□□□□ -0.49
CHD3-208	ENST00000470531	IKBKB	O14920	756 aa		11.98	□□□□□ -0.49
CHD3-208	ENST00000470531	RAPGEF1	Q13905	1077 aa		11.98	□□□□□ -0.49
CHD3-208	ENST00000470531	TSGA10IP	Q3SY00	556 aa		11.98	□□□□□ -0.49
CHD3-208	ENST00000470531	NAA35	Q5VZE5	725 aa		11.98	□□□□□ -0.49
CHD3-208	ENST00000470531	CYP26C1	Q6V0L0	522 aa		11.98	□□□□□ -0.49
CHD3-208	ENST00000470531	CDC23	Q9UJX2	597 aa		11.98	□□□□□ -0.49
CHD3-208	ENST00000470531	MON2	Q7Z3U7	1717 aa		11.97	□□□□□ -0.49
CHD3-208	ENST00000470531	SHTN1	A0MZ66	631 aa		11.97	□□□□□ -0.49
CHD3-208	ENST00000470531	COPB1	P53618	953 aa	Known RBP	11.97	□□□□□ -0.49
CHD3-208	ENST00000470531	MAP9	Q49MG5	647 aa		11.97	□□□□□ -0.49
CHD3-208	ENST00000470531	EARS2	Q5JPH6	523 aa	Known RBP	11.97	□□□□□ -0.49
CHD3-208	ENST00000470531	MAEA	Q7L5Y9	396 aa		11.97	□□□□□ -0.49
CHD3-208	ENST00000470531	TC2N	Q8N9U0	490 aa		11.97	□□□□□ -0.49
CHD3-208	ENST00000470531	TAF4B	Q92750	862 aa		11.97	□□□□□ -0.49
CHD3-208	ENST00000470531	GJA10	Q969M2	543 aa		11.97	□□□□□ -0.49
CHD3-208	ENST00000470531	ZSCAN10	Q96SZ4	725 aa	Predicted RBP	11.97	□□□□□ -0.49
CHD3-208	ENST00000470531	KLK7	P49862	253 aa		11.97	□□□□□ -0.49
CHD3-208	ENST00000470531	SUSD4	Q5VX71	490 aa		11.97	□□□□□ -0.49
CHD3-208	ENST00000470531	EHD2	Q9NZN4	543 aa		11.97	□□□□□ -0.49
CHD3-208	ENST00000470531	SAR1B	Q9Y6B6	198 aa		11.97	□□□□□ -0.49
CHD3-208	ENST00000470531	PHLPP2	Q6ZVD8	1323 aa		11.97	□□□□□ -0.49
CHD3-208	ENST00000470531	CEMIP	Q8WUJ3	1361 aa		11.97	□□□□□ -0.49
CHD3-208	ENST00000470531	PXDNL	A1KZ92	1463 aa		11.97	□□□□□ -0.49
CHD3-208	ENST00000470531	BACH1	O14867	736 aa		11.97	□□□□□ -0.49
CHD3-208	ENST00000470531	PCCA	P05165	728 aa	Predicted RBP	11.97	□□□□□ -0.49
CHD3-208	ENST00000470531	VEGFA	P15692	232 aa	Predicted RBP	11.97	□□□□□ -0.49
CHD3-208	ENST00000470531	DCAF17	Q5H9S7	520 aa	Predicted RBP	11.97	□□□□□ -0.49
CHD3-208	ENST00000470531	GIGYF2	Q6Y7W6	1299 aa	Known RBP	11.97	□□□□□ -0.49
CHD3-208	ENST00000470531	CALML4	Q96GE6	196 aa		11.97	□□□□□ -0.49
CHD3-208	ENST00000470531	PKD2L1	Q9P0L9	805 aa		11.97	□□□□□ -0.49
CHD3-208	ENST00000470531	DUSP10	Q9Y6W6	482 aa		11.97	□□□□□ -0.49
CHD3-208	ENST00000470531	TMEM110-MUSTN1	A8MSY1	372 aa		11.96	□□□□□ -0.49
CHD3-208	ENST00000470531	CD44	P16070	742 aa	Known RBP	11.96	□□□□□ -0.49
CHD3-208	ENST00000470531	KIF5B	P33176	963 aa		11.96	□□□□□ -0.49
CHD3-208	ENST00000470531	CASP8	Q14790	479 aa		11.96	□□□□□ -0.49
CHD3-208	ENST00000470531	TMC4	Q7Z404	712 aa		11.96	□□□□□ -0.49
CHD3-208	ENST00000470531	AFAP1L1	Q8TED9	768 aa		11.96	□□□□□ -0.49
CHD3-208	ENST00000470531	FAM212A	Q96EL1	285 aa		11.96	□□□□□ -0.49
CHD3-208	ENST00000470531	SPAG5	Q96R06	1193 aa		11.96	□□□□□ -0.49
CHD3-208	ENST00000470531	EPB41L4A	Q9HCS5	686 aa	Predicted RBP	11.96	□□□□□ -0.49
CHD3-208	ENST00000470531	GOLGA6C	A6NDK9	693 aa		11.96	□□□□□ -0.49
CHD3-208	ENST00000470531	GSG1L2	A8MUP6	293 aa		11.96	□□□□□ -0.49
CHD3-208	ENST00000470531	PPP6R2	O75170	966 aa		11.96	□□□□□ -0.49
CHD3-208	ENST00000470531	FMNL1	O95466	1100 aa	Predicted RBP	11.96	□□□□□ -0.49
CHD3-208	ENST00000470531	GOLGA6D	P0CG33	693 aa		11.96	□□□□□ -0.49
CHD3-208	ENST00000470531	BMP6	P22004	513 aa		11.96	□□□□□ -0.49
CHD3-208	ENST00000470531	ARID4A	P29374	1257 aa	Predicted RBP	11.96	□□□□□ -0.49

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