RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 EYA2O00167 538 aa6.6□□□□□ -1.35
PTPN4-209ENST00000469511 ALDH1L1O75891 902 aa6.6□□□□□ -1.35
PTPN4-209ENST00000469511 IGHA2P01877 340 aa6.6□□□□□ -1.35
PTPN4-209ENST00000469511 CNGA1P29973 690 aa6.6□□□□□ -1.35
PTPN4-209ENST00000469511 ERVK-9P63128 1117 aa6.6□□□□□ -1.35
PTPN4-209ENST00000469511 ERVK-24P63145 666 aa6.6□□□□□ -1.35
PTPN4-209ENST00000469511 ADGRE1Q14246 886 aa6.6□□□□□ -1.35
PTPN4-209ENST00000469511 PUM3Q15397 648 aaKnown RBP6.6□□□□□ -1.35
PTPN4-209ENST00000469511 CCDC85BQ15834 202 aaPredicted RBP6.6□□□□□ -1.35
PTPN4-209ENST00000469511 PRAMEF19Q5SWL8 479 aa6.6□□□□□ -1.35
PTPN4-209ENST00000469511 DESI1Q6ICB0 168 aa6.6□□□□□ -1.35
PTPN4-209ENST00000469511 POTEGQ6S5H5 508 aa6.6□□□□□ -1.35
PTPN4-209ENST00000469511 NYAP1Q6ZVC0 841 aa6.6□□□□□ -1.35
PTPN4-209ENST00000469511 PLEKHH3Q7Z736 793 aa6.6□□□□□ -1.35
PTPN4-209ENST00000469511 RETREG3Q86VR2 466 aa6.6□□□□□ -1.35
PTPN4-209ENST00000469511 GPRC5AQ8NFJ5 357 aa6.6□□□□□ -1.35
PTPN4-209ENST00000469511 ADAMTS19Q8TE59 1207 aa6.6□□□□□ -1.35
PTPN4-209ENST00000469511 POM121Q96HA1 1249 aa6.6□□□□□ -1.35
PTPN4-209ENST00000469511 CHMP4AQ9BY43 222 aa6.6□□□□□ -1.35
PTPN4-209ENST00000469511 SRCIN1Q9C0H9 1055 aa6.6□□□□□ -1.35
PTPN4-209ENST00000469511 DNAJC18Q9H819 358 aa6.6□□□□□ -1.35
PTPN4-209ENST00000469511 DDX20Q9UHI6 824 aaKnown RBP6.6□□□□□ -1.35
PTPN4-209ENST00000469511 COG6Q9Y2V7 657 aa6.6□□□□□ -1.35
PTPN4-209ENST00000469511 PRRC2BQ5JSZ5 2229 aaKnown RBP6.6□□□□□ -1.35
PTPN4-209ENST00000469511 SALL1Q9NSC2 1324 aa6.59□□□□□ -1.35
PTPN4-209ENST00000469511 POTEMA6NI47 508 aa6.59□□□□□ -1.35
PTPN4-209ENST00000469511 USP17L5A8MUK1 530 aa6.59□□□□□ -1.35
PTPN4-209ENST00000469511 TRAK2O60296 914 aa6.59□□□□□ -1.35
PTPN4-209ENST00000469511 SLC5A1P13866 664 aa6.59□□□□□ -1.35
PTPN4-209ENST00000469511 HOXA7P31268 230 aaPredicted RBP6.59□□□□□ -1.35
PTPN4-209ENST00000469511 RGS2P41220 211 aa6.59□□□□□ -1.35
PTPN4-209ENST00000469511 BACE1P56817 501 aa6.59□□□□□ -1.35
PTPN4-209ENST00000469511 IRX3P78415 501 aaPredicted RBP6.59□□□□□ -1.35
PTPN4-209ENST00000469511 CTDSPL2Q05D32 466 aa6.59□□□□□ -1.35
PTPN4-209ENST00000469511 PI16Q6UXB8 463 aa6.59□□□□□ -1.35
PTPN4-209ENST00000469511 TBC1D9Q6ZT07 1266 aa6.59□□□□□ -1.35
PTPN4-209ENST00000469511 LPIN2Q92539 896 aa6.59□□□□□ -1.35
PTPN4-209ENST00000469511 LPAR1Q92633 364 aa6.59□□□□□ -1.35
PTPN4-209ENST00000469511 EDC3Q96F86 508 aaKnown RBP6.59□□□□□ -1.35
PTPN4-209ENST00000469511 ASB2Q96Q27 587 aa6.59□□□□□ -1.35
PTPN4-209ENST00000469511 USP44Q9H0E7 712 aa6.59□□□□□ -1.35
PTPN4-209ENST00000469511 OSBPL5Q9H0X9 879 aaPredicted RBP6.59□□□□□ -1.35
PTPN4-209ENST00000469511 SIL1Q9H173 461 aa6.59□□□□□ -1.35
PTPN4-209ENST00000469511 PRDM12Q9H4Q4 367 aa6.59□□□□□ -1.35
PTPN4-209ENST00000469511 ZNF576Q9H609 170 aa6.59□□□□□ -1.35
PTPN4-209ENST00000469511 EPHX3Q9H6B9 360 aa6.59□□□□□ -1.35
PTPN4-209ENST00000469511 PRKRIP1Q9H875 184 aaPredicted RBP6.59□□□□□ -1.35
PTPN4-209ENST00000469511 BTBD7Q9P203 1132 aa6.59□□□□□ -1.35
PTPN4-209ENST00000469511 ABCF2Q9UG63 623 aa6.59□□□□□ -1.35
PTPN4-209ENST00000469511 PA2G4Q9UQ80 394 aaKnown RBP6.59□□□□□ -1.35
PTPN4-209ENST00000469511 PCDHB3Q9Y5E6 796 aa6.59□□□□□ -1.35
PTPN4-209ENST00000469511 FOCADQ5VW36 1801 aa6.59□□□□□ -1.35
PTPN4-209ENST00000469511 MYH1P12882 1939 aa6.58□□□□□ -1.36
PTPN4-209ENST00000469511 KIF16BQ96L93 1317 aa6.58□□□□□ -1.36
PTPN4-209ENST00000469511 GPR75-ASB3A0A0A6YYF3 556 aa6.58□□□□□ -1.36
PTPN4-209ENST00000469511 DNM1LO00429 736 aa6.58□□□□□ -1.36
PTPN4-209ENST00000469511 NR1I2O75469 434 aa6.58□□□□□ -1.36
PTPN4-209ENST00000469511 GDF11O95390 407 aa6.58□□□□□ -1.36
PTPN4-209ENST00000469511 CYBAP13498 195 aa6.58□□□□□ -1.36
PTPN4-209ENST00000469511 ADCYAP1R1P41586 468 aa6.58□□□□□ -1.36
PTPN4-209ENST00000469511 TIMM10P62072 90 aa6.58□□□□□ -1.36
PTPN4-209ENST00000469511 MECOMQ03112 1051 aa6.58□□□□□ -1.36
PTPN4-209ENST00000469511 TFF2Q03403 129 aa6.58□□□□□ -1.36
PTPN4-209ENST00000469511 TLE2Q04725 743 aa6.58□□□□□ -1.36
PTPN4-209ENST00000469511 RASGRF1Q13972 1273 aa6.58□□□□□ -1.36
PTPN4-209ENST00000469511 SNX17Q15036 470 aa6.58□□□□□ -1.36
PTPN4-209ENST00000469511 ATP2B3Q16720 1220 aa6.58□□□□□ -1.36
PTPN4-209ENST00000469511 CCDC27Q2M243 656 aa6.58□□□□□ -1.36
PTPN4-209ENST00000469511 BRICD5Q6PL45 260 aa6.58□□□□□ -1.36
PTPN4-209ENST00000469511 C16orf59Q7L2K0 433 aa6.58□□□□□ -1.36
PTPN4-209ENST00000469511 SCUBE3Q8IX30 993 aa6.58□□□□□ -1.36
PTPN4-209ENST00000469511 PRR7Q8TB68 274 aa6.58□□□□□ -1.36
PTPN4-209ENST00000469511 SOCS4Q8WXH5 440 aa6.58□□□□□ -1.36
PTPN4-209ENST00000469511 THAP11Q96EK4 314 aa6.58□□□□□ -1.36
PTPN4-209ENST00000469511 RNPC3Q96LT9 517 aaKnown RBP6.58□□□□□ -1.36
PTPN4-209ENST00000469511 UHRF1Q96T88 793 aaPredicted RBP6.58□□□□□ -1.36
PTPN4-209ENST00000469511 APBA2Q99767 749 aa6.58□□□□□ -1.36
PTPN4-209ENST00000469511 PRM3Q9NNZ6 103 aa6.58□□□□□ -1.36
PTPN4-209ENST00000469511 PRKAG2Q9UGJ0 569 aa6.58□□□□□ -1.36
PTPN4-209ENST00000469511 BRWD1Q9NSI6 2320 aa6.58□□□□□ -1.36
PTPN4-209ENST00000469511 COL11A1P12107 1806 aaPredicted RBP6.57□□□□□ -1.36
PTPN4-209ENST00000469511 MROH7-TTC4A0A0A0MT08 1334 aa6.57□□□□□ -1.36
PTPN4-209ENST00000469511 IL16Q14005 1332 aa6.57□□□□□ -1.36
PTPN4-209ENST00000469511 MCM3APO60318 1980 aa6.57□□□□□ -1.36
PTPN4-209ENST00000469511 RBAK-RBAKDNI3L0D1 243 aa6.57□□□□□ -1.36
PTPN4-209ENST00000469511 COBLO75128 1261 aa6.57□□□□□ -1.36
PTPN4-209ENST00000469511 BMP1P13497 986 aa6.57□□□□□ -1.36
PTPN4-209ENST00000469511 MAPK4P31152 587 aa6.57□□□□□ -1.36
PTPN4-209ENST00000469511 PABPC4Q13310 644 aaKnown RBP eCLIP6.57□□□□□ -1.36
PTPN4-209ENST00000469511 ZYXQ15942 572 aaKnown RBP6.57□□□□□ -1.36
PTPN4-209ENST00000469511 WDR78Q5VTH9 848 aa6.57□□□□□ -1.36
PTPN4-209ENST00000469511 CCDC102BQ68D86 513 aa6.57□□□□□ -1.36
PTPN4-209ENST00000469511 BLOC1S3Q6QNY0 202 aa6.57□□□□□ -1.36
PTPN4-209ENST00000469511 DZIP1Q86YF9 867 aaKnown RBP6.57□□□□□ -1.36
PTPN4-209ENST00000469511 KCTD12Q96CX2 325 aaKnown RBP6.57□□□□□ -1.36
PTPN4-209ENST00000469511 BUD13Q9BRD0 619 aaKnown RBP eCLIP6.57□□□□□ -1.36
PTPN4-209ENST00000469511 LRFN3Q9BTN0 628 aa6.57□□□□□ -1.36
PTPN4-209ENST00000469511 WDR18Q9BV38 432 aa6.57□□□□□ -1.36
PTPN4-209ENST00000469511 PBX4Q9BYU1 374 aa6.57□□□□□ -1.36
PTPN4-209ENST00000469511 DENND2AQ9ULE3 1009 aa6.57□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms