RNA–Protein interactions for RNA: ENST00000469232.5

NPHP3-204, Transcript of nephrocystin 3, humanhuman

TSL 2

Gene NPHP3, Length 1,616 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-204ENST00000469232 NBPF11Q86T75 865 aa9.53□□□□□ -0.88
NPHP3-204ENST00000469232 USP48Q86UV5 1035 aa9.53□□□□□ -0.88
NPHP3-204ENST00000469232 NECAB1Q8N987 351 aa9.53□□□□□ -0.88
NPHP3-204ENST00000469232 CDCA5Q96FF9 252 aa9.53□□□□□ -0.88
NPHP3-204ENST00000469232 CRISPLD2Q9H0B8 497 aa9.53□□□□□ -0.88
NPHP3-204ENST00000469232 CABP5Q9NP86 173 aa9.53□□□□□ -0.88
NPHP3-204ENST00000469232 NMRK2Q9NPI5 230 aa9.53□□□□□ -0.88
NPHP3-204ENST00000469232 RBM28Q9NW13 759 aaKnown RBP9.53□□□□□ -0.88
NPHP3-204ENST00000469232 SCAF8Q9UPN6 1271 aaKnown RBP9.53□□□□□ -0.88
NPHP3-204ENST00000469232 TMX2Q9Y320 296 aa9.53□□□□□ -0.88
NPHP3-204ENST00000469232 ZSCAN21Q9Y5A6 473 aaPredicted RBP9.53□□□□□ -0.88
NPHP3-204ENST00000469232 A0A1W2PRG0 241 aa9.52□□□□□ -0.89
NPHP3-204ENST00000469232 GDF11O95390 407 aa9.52□□□□□ -0.89
NPHP3-204ENST00000469232 ITGBL1O95965 494 aaPredicted RBP9.52□□□□□ -0.89
NPHP3-204ENST00000469232 PDHBP11177 359 aa9.52□□□□□ -0.89
NPHP3-204ENST00000469232 PDIA4P13667 645 aaKnown RBP9.52□□□□□ -0.89
NPHP3-204ENST00000469232 INPP5BP32019 993 aa9.52□□□□□ -0.89
NPHP3-204ENST00000469232 SLC4A3P48751 1232 aa9.52□□□□□ -0.89
NPHP3-204ENST00000469232 METAP2P50579 478 aaKnown RBP eCLIP9.52□□□□□ -0.89
NPHP3-204ENST00000469232 ICA1Q05084 483 aa9.52□□□□□ -0.89
NPHP3-204ENST00000469232 SYNE3Q6ZMZ3 975 aa9.52□□□□□ -0.89
NPHP3-204ENST00000469232 PPP1R3FQ6ZSY5 799 aaPredicted RBP9.52□□□□□ -0.89
NPHP3-204ENST00000469232 CCDC83Q8IWF9 413 aa9.52□□□□□ -0.89
NPHP3-204ENST00000469232 SCYL3Q8IZE3 742 aa9.52□□□□□ -0.89
NPHP3-204ENST00000469232 GMCL1Q96IK5 515 aa9.52□□□□□ -0.89
NPHP3-204ENST00000469232 GLIS2Q9BZE0 524 aaPredicted RBP9.52□□□□□ -0.89
NPHP3-204ENST00000469232 KAT14Q9H8E8 782 aa9.52□□□□□ -0.89
NPHP3-204ENST00000469232 NCOA5Q9HCD5 579 aaKnown RBP9.52□□□□□ -0.89
NPHP3-204ENST00000469232 MAD2L2Q9UI95 211 aa9.52□□□□□ -0.89
NPHP3-204ENST00000469232 PCDHGA4Q9Y5G9 962 aa9.52□□□□□ -0.89
NPHP3-204ENST00000469232 MYH4Q9Y623 1939 aa9.52□□□□□ -0.89
NPHP3-204ENST00000469232 OTOFQ9HC10 1997 aa9.51□□□□□ -0.89
NPHP3-204ENST00000469232 GOLGA8AA7E2F4 631 aa9.51□□□□□ -0.89
NPHP3-204ENST00000469232 PLA2G6O60733 806 aa9.51□□□□□ -0.89
NPHP3-204ENST00000469232 FDPSP14324 419 aaKnown RBP9.51□□□□□ -0.89
NPHP3-204ENST00000469232 ADD1P35611 737 aaKnown RBP9.51□□□□□ -0.89
NPHP3-204ENST00000469232 FKBP1BP68106 108 aa9.51□□□□□ -0.89
NPHP3-204ENST00000469232 MAP3K9P80192 1104 aa9.51□□□□□ -0.89
NPHP3-204ENST00000469232 HMGN5P82970 282 aaKnown RBP9.51□□□□□ -0.89
NPHP3-204ENST00000469232 ZNF543Q08ER8 600 aa9.51□□□□□ -0.89
NPHP3-204ENST00000469232 RTN1Q16799 776 aa9.51□□□□□ -0.89
NPHP3-204ENST00000469232 SLC35G1Q2M3R5 365 aa9.51□□□□□ -0.89
NPHP3-204ENST00000469232 VARS2Q5ST30 1063 aaKnown RBP9.51□□□□□ -0.89
NPHP3-204ENST00000469232 PRAMEF18Q5VWM3 479 aa9.51□□□□□ -0.89
NPHP3-204ENST00000469232 NFXL1Q6ZNB6 911 aa9.51□□□□□ -0.89
NPHP3-204ENST00000469232 TMTC3Q6ZXV5 915 aa9.51□□□□□ -0.89
NPHP3-204ENST00000469232 NOL8Q76FK4 1167 aaKnown RBP9.51□□□□□ -0.89
NPHP3-204ENST00000469232 DCAF4Q8WV16 495 aa9.51□□□□□ -0.89
NPHP3-204ENST00000469232 LZTS2Q9BRK4 669 aa9.51□□□□□ -0.89
NPHP3-204ENST00000469232 KIAA1683Q9H0B3 1180 aa9.51□□□□□ -0.89
NPHP3-204ENST00000469232 STX8Q9UNK0 236 aa9.51□□□□□ -0.89
NPHP3-204ENST00000469232 USP17L5A8MUK1 530 aa9.5□□□□□ -0.89
NPHP3-204ENST00000469232 PPP1R12BO60237 982 aaPredicted RBP9.5□□□□□ -0.89
NPHP3-204ENST00000469232 PTPRAP18433 802 aa9.5□□□□□ -0.89
NPHP3-204ENST00000469232 KIF5BP33176 963 aa9.5□□□□□ -0.89
NPHP3-204ENST00000469232 GNAQP50148 359 aa9.5□□□□□ -0.89
NPHP3-204ENST00000469232 ASPRV1Q53RT3 343 aa9.5□□□□□ -0.89
NPHP3-204ENST00000469232 BTNL9Q6UXG8 535 aa9.5□□□□□ -0.89
NPHP3-204ENST00000469232 DLK2Q6UY11 383 aa9.5□□□□□ -0.89
NPHP3-204ENST00000469232 MICU3Q86XE3 530 aa9.5□□□□□ -0.89
NPHP3-204ENST00000469232 CLEC10AQ8IUN9 316 aa9.5□□□□□ -0.89
NPHP3-204ENST00000469232 FAM177A1Q8N128 213 aaPredicted RBP9.5□□□□□ -0.89
NPHP3-204ENST00000469232 MTMR8Q96EF0 704 aa9.5□□□□□ -0.89
NPHP3-204ENST00000469232 C12orf42Q96LP6 360 aa9.5□□□□□ -0.89
NPHP3-204ENST00000469232 MYL10Q9BUA6 226 aa9.5□□□□□ -0.89
NPHP3-204ENST00000469232 SPZ1Q9BXG8 430 aa9.5□□□□□ -0.89
NPHP3-204ENST00000469232 RNF26Q9BY78 433 aaPredicted RBP9.5□□□□□ -0.89
NPHP3-204ENST00000469232 CLIP2Q9UDT6 1046 aa9.5□□□□□ -0.89
NPHP3-204ENST00000469232 SNCAIPQ9Y6H5 919 aa9.5□□□□□ -0.89
NPHP3-204ENST00000469232 F5H6K3 240 aa9.49□□□□□ -0.89
NPHP3-204ENST00000469232 MPHOSPH10O00566 681 aaKnown RBP9.49□□□□□ -0.89
NPHP3-204ENST00000469232 PRPF3O43395 683 aaKnown RBP9.49□□□□□ -0.89
NPHP3-204ENST00000469232 CDKL5O76039 1030 aa9.49□□□□□ -0.89
NPHP3-204ENST00000469232 FMNL1O95466 1100 aaPredicted RBP9.49□□□□□ -0.89
NPHP3-204ENST00000469232 CCT2P78371 535 aaKnown RBP9.49□□□□□ -0.89
NPHP3-204ENST00000469232 KLRC3Q07444 240 aa9.49□□□□□ -0.89
NPHP3-204ENST00000469232 STK3Q13188 491 aa9.49□□□□□ -0.89
NPHP3-204ENST00000469232 EAPPQ56P03 285 aaPredicted RBP9.49□□□□□ -0.89
NPHP3-204ENST00000469232 SH3D19Q5HYK7 790 aa9.49□□□□□ -0.89
NPHP3-204ENST00000469232 GPATCH4Q5T3I0 446 aaKnown RBP9.49□□□□□ -0.89
NPHP3-204ENST00000469232 MAP1SQ66K74 1059 aaPredicted RBP9.49□□□□□ -0.89
NPHP3-204ENST00000469232 SRBD1Q8N5C6 995 aaKnown RBP9.49□□□□□ -0.89
NPHP3-204ENST00000469232 ACER1Q8TDN7 264 aa9.49□□□□□ -0.89
NPHP3-204ENST00000469232 WRNIP1Q96S55 665 aa9.49□□□□□ -0.89
NPHP3-204ENST00000469232 RIOX1Q9H6W3 641 aa9.49□□□□□ -0.89
NPHP3-204ENST00000469232 SH2D4AQ9H788 454 aa9.49□□□□□ -0.89
NPHP3-204ENST00000469232 VCPKMTQ9H867 229 aa9.49□□□□□ -0.89
NPHP3-204ENST00000469232 ARHGEF10LQ9HCE6 1279 aa9.49□□□□□ -0.89
NPHP3-204ENST00000469232 CNTNAP5Q8WYK1 1306 aa9.49□□□□□ -0.89
NPHP3-204ENST00000469232 PTPDC1A2A3K4 754 aa9.49□□□□□ -0.89
NPHP3-204ENST00000469232 JAK2O60674 1132 aa9.49□□□□□ -0.89
NPHP3-204ENST00000469232 NDUFB10O96000 172 aa9.49□□□□□ -0.89
NPHP3-204ENST00000469232 NUDT7P0C024 238 aa9.49□□□□□ -0.89
NPHP3-204ENST00000469232 RXRAP19793 462 aa9.49□□□□□ -0.89
NPHP3-204ENST00000469232 GJB2P29033 226 aa9.49□□□□□ -0.89
NPHP3-204ENST00000469232 NF2P35240 595 aa9.49□□□□□ -0.89
NPHP3-204ENST00000469232 IREB2P48200 963 aaKnown RBP9.49□□□□□ -0.89
NPHP3-204ENST00000469232 KIAA1755Q5JYT7 1200 aa9.49□□□□□ -0.89
NPHP3-204ENST00000469232 CPLX2Q6PUV4 134 aaKnown RBP9.49□□□□□ -0.89
NPHP3-204ENST00000469232 STAG2Q8N3U4 1231 aa9.49□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms