RNA–Protein interactions for RNA: ENST00000468421.1

MSX1-202, Transcript of msh homeobox 1, humanhuman

TSL 3

Gene MSX1, Length 509 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-202ENST00000468421 FOXD4L5Q5VV16 416 aaPredicted RBP12.48□□□□□ -0.41
MSX1-202ENST00000468421 TTBK2Q6IQ55 1244 aa12.48□□□□□ -0.41
MSX1-202ENST00000468421 KCTD1Q719H9 257 aa12.48□□□□□ -0.41
MSX1-202ENST00000468421 DCAF4Q8WV16 495 aa12.48□□□□□ -0.41
MSX1-202ENST00000468421 FOXD4L4Q8WXT5 416 aaPredicted RBP12.48□□□□□ -0.41
MSX1-202ENST00000468421 NUP88Q99567 741 aaPredicted RBP12.48□□□□□ -0.41
MSX1-202ENST00000468421 RNF26Q9BY78 433 aaPredicted RBP12.48□□□□□ -0.41
MSX1-202ENST00000468421 GPCPD1Q9NPB8 672 aa12.48□□□□□ -0.41
MSX1-202ENST00000468421 GJB4Q9NTQ9 266 aa12.48□□□□□ -0.41
MSX1-202ENST00000468421 SYNPO2Q9UMS6 1093 aa12.48□□□□□ -0.41
MSX1-202ENST00000468421 MTMR6Q9Y217 621 aa12.48□□□□□ -0.41
MSX1-202ENST00000468421 SNCAIPQ9Y6H5 919 aa12.48□□□□□ -0.41
MSX1-202ENST00000468421 TCHHQ07283 1943 aa12.48□□□□□ -0.41
MSX1-202ENST00000468421 LOC285556D6RIA3 1793 aa12.48□□□□□ -0.41
MSX1-202ENST00000468421 VPS37CA5D8V6 355 aaPredicted RBP12.47□□□□□ -0.41
MSX1-202ENST00000468421 PPP1R12BO60237 982 aaPredicted RBP12.47□□□□□ -0.41
MSX1-202ENST00000468421 DEXIO95424 95 aa12.47□□□□□ -0.41
MSX1-202ENST00000468421 PTPRAP18433 802 aa12.47□□□□□ -0.41
MSX1-202ENST00000468421 NF2P35240 595 aa12.47□□□□□ -0.41
MSX1-202ENST00000468421 MAP3K9P80192 1104 aa12.47□□□□□ -0.41
MSX1-202ENST00000468421 VGLL4Q14135 290 aa12.47□□□□□ -0.41
MSX1-202ENST00000468421 ZYXQ15942 572 aaKnown RBP12.47□□□□□ -0.41
MSX1-202ENST00000468421 OTUD7BQ6GQQ9 843 aa12.47□□□□□ -0.41
MSX1-202ENST00000468421 TRIM22Q8IYM9 498 aa12.47□□□□□ -0.41
MSX1-202ENST00000468421 SHISA4Q96DD7 197 aa12.47□□□□□ -0.41
MSX1-202ENST00000468421 ALG1Q9BT22 464 aa12.47□□□□□ -0.41
MSX1-202ENST00000468421 SPZ1Q9BXG8 430 aa12.47□□□□□ -0.41
MSX1-202ENST00000468421 UBA5Q9GZZ9 404 aa12.47□□□□□ -0.41
MSX1-202ENST00000468421 VCPKMTQ9H867 229 aa12.47□□□□□ -0.41
MSX1-202ENST00000468421 KIF3AQ9Y496 699 aa12.47□□□□□ -0.41
MSX1-202ENST00000468421 RLFQ13129 1914 aa12.47□□□□□ -0.41
MSX1-202ENST00000468421 ZSCAN22P10073 491 aaPredicted RBP12.46□□□□□ -0.41
MSX1-202ENST00000468421 PDCP20941 246 aa12.46□□□□□ -0.41
MSX1-202ENST00000468421 SLC16A2P36021 539 aa12.46□□□□□ -0.41
MSX1-202ENST00000468421 SLC1A4P43007 532 aa12.46□□□□□ -0.41
MSX1-202ENST00000468421 IREB2P48200 963 aaKnown RBP12.46□□□□□ -0.41
MSX1-202ENST00000468421 GUCY1B3Q02153 619 aa12.46□□□□□ -0.41
MSX1-202ENST00000468421 DGKZQ13574 1117 aa12.46□□□□□ -0.41
MSX1-202ENST00000468421 MAP3K11Q16584 847 aa12.46□□□□□ -0.41
MSX1-202ENST00000468421 GPATCH4Q5T3I0 446 aaKnown RBP12.46□□□□□ -0.41
MSX1-202ENST00000468421 SPICE1Q8N0Z3 855 aa12.46□□□□□ -0.41
MSX1-202ENST00000468421 PIBF1Q8WXW3 757 aa12.46□□□□□ -0.41
MSX1-202ENST00000468421 TNPO1Q92973 898 aaKnown RBP12.46□□□□□ -0.41
MSX1-202ENST00000468421 GMCL1Q96IK5 515 aa12.46□□□□□ -0.41
MSX1-202ENST00000468421 C8orf76Q96K31 380 aa12.46□□□□□ -0.41
MSX1-202ENST00000468421 FEZ1Q99689 392 aa12.46□□□□□ -0.41
MSX1-202ENST00000468421 LZTS2Q9BRK4 669 aa12.46□□□□□ -0.41
MSX1-202ENST00000468421 WDR18Q9BV38 432 aa12.46□□□□□ -0.41
MSX1-202ENST00000468421 SH2D4AQ9H788 454 aa12.46□□□□□ -0.41
MSX1-202ENST00000468421 GOPCQ9HD26 462 aa12.46□□□□□ -0.41
MSX1-202ENST00000468421 PICK1Q9NRD5 415 aa12.46□□□□□ -0.41
MSX1-202ENST00000468421 V9GY48 417 aaPredicted RBP12.46□□□□□ -0.41
MSX1-202ENST00000468421 WDR33Q9C0J8 1336 aaKnown RBP12.45□□□□□ -0.42
MSX1-202ENST00000468421 BMP3P12645 472 aa12.45□□□□□ -0.42
MSX1-202ENST00000468421 MTMR2Q13614 643 aa12.45□□□□□ -0.42
MSX1-202ENST00000468421 TTLL12Q14166 644 aaPredicted RBP12.45□□□□□ -0.42
MSX1-202ENST00000468421 FAM83BQ5T0W9 1011 aa12.45□□□□□ -0.42
MSX1-202ENST00000468421 CNKSR2Q8WXI2 1034 aa12.45□□□□□ -0.42
MSX1-202ENST00000468421 CLMNQ96JQ2 1002 aa12.45□□□□□ -0.42
MSX1-202ENST00000468421 KIAA1683Q9H0B3 1180 aa12.45□□□□□ -0.42
MSX1-202ENST00000468421 RIOX1Q9H6W3 641 aa12.45□□□□□ -0.42
MSX1-202ENST00000468421 ZNF408Q9H9D4 720 aa12.45□□□□□ -0.42
MSX1-202ENST00000468421 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.45□□□□□ -0.42
MSX1-202ENST00000468421 ISY1Q9ULR0 285 aaKnown RBP12.45□□□□□ -0.42
MSX1-202ENST00000468421 ZHX2Q9Y6X8 837 aa12.45□□□□□ -0.42
MSX1-202ENST00000468421 COL11A1P12107 1806 aaPredicted RBP12.45□□□□□ -0.42
MSX1-202ENST00000468421 USP17L10C9JJH3 530 aa12.44□□□□□ -0.42
MSX1-202ENST00000468421 H3BQV1 296 aa12.44□□□□□ -0.42
MSX1-202ENST00000468421 F13A1P00488 732 aa12.44□□□□□ -0.42
MSX1-202ENST00000468421 SCG2P13521 617 aa12.44□□□□□ -0.42
MSX1-202ENST00000468421 SMARCA1P28370 1054 aa12.44□□□□□ -0.42
MSX1-202ENST00000468421 AKAP17AQ02040 695 aaKnown RBP12.44□□□□□ -0.42
MSX1-202ENST00000468421 SPP2Q13103 211 aa12.44□□□□□ -0.42
MSX1-202ENST00000468421 PFKFB3Q16875 520 aaPredicted RBP12.44□□□□□ -0.42
MSX1-202ENST00000468421 IFFO2Q5TF58 517 aa12.44□□□□□ -0.42
MSX1-202ENST00000468421 KRT40Q6A162 431 aa12.44□□□□□ -0.42
MSX1-202ENST00000468421 FERMT3Q86UX7 667 aa12.44□□□□□ -0.42
MSX1-202ENST00000468421 ANKRD13AQ8IZ07 590 aa12.44□□□□□ -0.42
MSX1-202ENST00000468421 ZNF280CQ8ND82 737 aa12.44□□□□□ -0.42
MSX1-202ENST00000468421 FBXO18Q8NFZ0 1043 aa12.44□□□□□ -0.42
MSX1-202ENST00000468421 CHAMP1Q96JM3 812 aa12.44□□□□□ -0.42
MSX1-202ENST00000468421 PIGSQ96S52 555 aa12.44□□□□□ -0.42
MSX1-202ENST00000468421 ELP3Q9H9T3 547 aa12.44□□□□□ -0.42
MSX1-202ENST00000468421 JMJD4Q9H9V9 463 aa12.44□□□□□ -0.42
MSX1-202ENST00000468421 AS3MTQ9HBK9 375 aa12.44□□□□□ -0.42
MSX1-202ENST00000468421 VAT1LQ9HCJ6 419 aa12.44□□□□□ -0.42
MSX1-202ENST00000468421 VPS54Q9P1Q0 977 aa12.44□□□□□ -0.42
MSX1-202ENST00000468421 CSADQ9Y600 493 aa12.44□□□□□ -0.42
MSX1-202ENST00000468421 SMCHD1A6NHR9 2005 aa12.44□□□□□ -0.42
MSX1-202ENST00000468421 TRIM75PA6NK02 468 aa12.43□□□□□ -0.42
MSX1-202ENST00000468421 TMEM232C9JQI7 657 aa12.43□□□□□ -0.42
MSX1-202ENST00000468421 ITGBL1O95965 494 aaPredicted RBP12.43□□□□□ -0.42
MSX1-202ENST00000468421 C1QTNF8P60827 252 aa12.43□□□□□ -0.42
MSX1-202ENST00000468421 RESTQ13127 1097 aa12.43□□□□□ -0.42
MSX1-202ENST00000468421 LDLRAD1Q5T700 205 aa12.43□□□□□ -0.42
MSX1-202ENST00000468421 WWC2Q6AWC2 1192 aa12.43□□□□□ -0.42
MSX1-202ENST00000468421 CHADLQ6NUI6 762 aa12.43□□□□□ -0.42
MSX1-202ENST00000468421 BTNL9Q6UXG8 535 aa12.43□□□□□ -0.42
MSX1-202ENST00000468421 ARMC9Q7Z3E5 817 aa12.43□□□□□ -0.42
MSX1-202ENST00000468421 HOMER1Q86YM7 354 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms