RNA–Protein interactions for RNA: ENST00000468211.6

PTCH1-210, Transcript of patched 1, humanhuman

TSL 1 (best) BASIC

Gene PTCH1, Length 1,254 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-210ENST00000468211 CNGA1P29973 690 aa29.33■■■□□ 2.29
PTCH1-210ENST00000468211 GIMAP6Q6P9H5 292 aa29.33■■■□□ 2.29
PTCH1-210ENST00000468211 PI4K2BQ8TCG2 481 aa29.33■■■□□ 2.29
PTCH1-210ENST00000468211 ROBO3Q96MS0 1386 aa29.33■■■□□ 2.29
PTCH1-210ENST00000468211 PLXNA1Q9UIW2 1896 aa29.33■■■□□ 2.29
PTCH1-210ENST00000468211 CYBAP13498 195 aa29.32■■■□□ 2.28
PTCH1-210ENST00000468211 LRRC26Q2I0M4 334 aa29.32■■■□□ 2.28
PTCH1-210ENST00000468211 FAM83BQ5T0W9 1011 aa29.32■■■□□ 2.28
PTCH1-210ENST00000468211 OLFML2BQ68BL8 750 aa29.32■■■□□ 2.28
PTCH1-210ENST00000468211 MROH8Q9H579 483 aa29.32■■■□□ 2.28
PTCH1-210ENST00000468211 SOX1O00570 391 aaPredicted RBP29.31■■■□□ 2.28
PTCH1-210ENST00000468211 ZFYP08048 801 aaPredicted RBP29.31■■■□□ 2.28
PTCH1-210ENST00000468211 SEC62Q99442 399 aaKnown RBP29.31■■■□□ 2.28
PTCH1-210ENST00000468211 GOPCQ9HD26 462 aa29.31■■■□□ 2.28
PTCH1-210ENST00000468211 TTC41PQ6P2S7 1318 aa29.3■■■□□ 2.28
PTCH1-210ENST00000468211 A0A1W2PPC1 479 aa29.3■■■□□ 2.28
PTCH1-210ENST00000468211 RAD21O60216 631 aa29.3■■■□□ 2.28
PTCH1-210ENST00000468211 NUP88Q99567 741 aaPredicted RBP29.3■■■□□ 2.28
PTCH1-210ENST00000468211 MKNK2Q9HBH9 465 aa29.3■■■□□ 2.28
PTCH1-210ENST00000468211 SMCHD1A6NHR9 2005 aa29.3■■■□□ 2.28
PTCH1-210ENST00000468211 PPP1R9AQ9ULJ8 1098 aa29.29■■■□□ 2.28
PTCH1-210ENST00000468211 VWA5AO00534 786 aa29.28■■■□□ 2.28
PTCH1-210ENST00000468211 RRP1P56182 461 aaKnown RBP29.28■■■□□ 2.28
PTCH1-210ENST00000468211 PRAMEF19Q5SWL8 479 aa29.28■■■□□ 2.28
PTCH1-210ENST00000468211 ANO1Q5XXA6 986 aa29.28■■■□□ 2.28
PTCH1-210ENST00000468211 ABRAQ8N0Z2 381 aa29.28■■■□□ 2.28
PTCH1-210ENST00000468211 REPS2Q8NFH8 660 aa29.28■■■□□ 2.28
PTCH1-210ENST00000468211 IGKV6D-41A0A0C4DH26 115 aa29.27■■■□□ 2.28
PTCH1-210ENST00000468211 MSCO60682 206 aa29.27■■■□□ 2.28
PTCH1-210ENST00000468211 PRDM1O75626 825 aa29.27■■■□□ 2.28
PTCH1-210ENST00000468211 BMP8BP34820 402 aa29.27■■■□□ 2.28
PTCH1-210ENST00000468211 MAGEA10P43363 369 aaPredicted RBP29.27■■■□□ 2.28
PTCH1-210ENST00000468211 TDO2P48775 406 aa29.27■■■□□ 2.28
PTCH1-210ENST00000468211 IFNL3Q8IZI9 196 aa29.27■■■□□ 2.28
PTCH1-210ENST00000468211 SENP6Q9GZR1 1112 aaPredicted RBP29.27■■■□□ 2.28
PTCH1-210ENST00000468211 NYAP2Q9P242 653 aa29.27■■■□□ 2.28
PTCH1-210ENST00000468211 ZNF214Q9UL59 606 aaPredicted RBP29.27■■■□□ 2.28
PTCH1-210ENST00000468211 SLC25A27O95847 323 aa29.26■■■□□ 2.27
PTCH1-210ENST00000468211 APPP05067 770 aa29.26■■■□□ 2.27
PTCH1-210ENST00000468211 FCER1AP12319 257 aa29.26■■■□□ 2.27
PTCH1-210ENST00000468211 GNAT2P19087 354 aa29.26■■■□□ 2.27
PTCH1-210ENST00000468211 RIOX2Q8IUF8 465 aa29.26■■■□□ 2.27
PTCH1-210ENST00000468211 LRCH3Q96II8 777 aa29.26■■■□□ 2.27
PTCH1-210ENST00000468211 MAML3Q96JK9 1138 aa29.26■■■□□ 2.27
PTCH1-210ENST00000468211 SALL3Q9BXA9 1300 aa29.25■■■□□ 2.27
PTCH1-210ENST00000468211 PATL2C9JE40 543 aaKnown RBP29.25■■■□□ 2.27
PTCH1-210ENST00000468211 F5H6K3 240 aa29.25■■■□□ 2.27
PTCH1-210ENST00000468211 ERC2O15083 957 aa29.25■■■□□ 2.27
PTCH1-210ENST00000468211 KLRC3Q07444 240 aa29.25■■■□□ 2.27
PTCH1-210ENST00000468211 NDUFB10O96000 172 aa29.24■■■□□ 2.27
PTCH1-210ENST00000468211 PGK2P07205 417 aa29.24■■■□□ 2.27
PTCH1-210ENST00000468211 STAT3P40763 770 aa29.24■■■□□ 2.27
PTCH1-210ENST00000468211 GJC2Q5T442 439 aaPredicted RBP29.24■■■□□ 2.27
PTCH1-210ENST00000468211 CRBNQ96SW2 442 aa29.24■■■□□ 2.27
PTCH1-210ENST00000468211 MMP19Q99542 508 aa29.24■■■□□ 2.27
PTCH1-210ENST00000468211 FSD1Q9BTV5 496 aa29.24■■■□□ 2.27
PTCH1-210ENST00000468211 CLIP2Q9UDT6 1046 aa29.24■■■□□ 2.27
PTCH1-210ENST00000468211 MX1P20591 662 aa29.23■■■□□ 2.27
PTCH1-210ENST00000468211 ZMYM1Q5SVZ6 1142 aa29.23■■■□□ 2.27
PTCH1-210ENST00000468211 SLC5A4Q9NY91 659 aa29.23■■■□□ 2.27
PTCH1-210ENST00000468211 DNM1LO00429 736 aa29.22■■■□□ 2.27
PTCH1-210ENST00000468211 SEPT4O43236 478 aa29.22■■■□□ 2.27
PTCH1-210ENST00000468211 ATN1P54259 1190 aaPredicted RBP29.22■■■□□ 2.27
PTCH1-210ENST00000468211 CEP95Q96GE4 821 aa29.22■■■□□ 2.27
PTCH1-210ENST00000468211 SLF1Q9BQI6 1058 aa29.22■■■□□ 2.27
PTCH1-210ENST00000468211 LRRFIP1Q32MZ4 808 aaKnown RBP29.21■■■□□ 2.27
PTCH1-210ENST00000468211 ZNF444Q8N0Y2 327 aaPredicted RBP29.21■■■□□ 2.27
PTCH1-210ENST00000468211 FOXP2O15409 715 aa29.2■■■□□ 2.26
PTCH1-210ENST00000468211 ZNF792Q3KQV3 632 aa29.2■■■□□ 2.26
PTCH1-210ENST00000468211 MTMR4Q9NYA4 1195 aa29.2■■■□□ 2.26
PTCH1-210ENST00000468211 RIPK3Q9Y572 518 aa29.2■■■□□ 2.26
PTCH1-210ENST00000468211 KCTD2Q14681 263 aa29.19■■■□□ 2.26
PTCH1-210ENST00000468211 ANKRD45Q5TZF3 282 aa29.19■■■□□ 2.26
PTCH1-210ENST00000468211 CCDC129Q6ZRS4 1044 aa29.19■■■□□ 2.26
PTCH1-210ENST00000468211 LRRC47Q8N1G4 583 aaKnown RBP29.19■■■□□ 2.26
PTCH1-210ENST00000468211 MKL1Q969V6 931 aa29.19■■■□□ 2.26
PTCH1-210ENST00000468211 FAM47AQ5JRC9 791 aa29.18■■■□□ 2.26
PTCH1-210ENST00000468211 NACAP1Q9BZK3 213 aa29.18■■■□□ 2.26
PTCH1-210ENST00000468211 TAL1P17542 331 aaPredicted RBP29.17■■■□□ 2.26
PTCH1-210ENST00000468211 MDM2Q00987 491 aaPredicted RBP29.17■■■□□ 2.26
PTCH1-210ENST00000468211 PPARAQ07869 468 aa29.17■■■□□ 2.26
PTCH1-210ENST00000468211 SNRNP48Q6IEG0 339 aaKnown RBP29.17■■■□□ 2.26
PTCH1-210ENST00000468211 PRPF38AQ8NAV1 312 aaKnown RBP29.17■■■□□ 2.26
PTCH1-210ENST00000468211 ARRDC4Q8NCT1 418 aa29.17■■■□□ 2.26
PTCH1-210ENST00000468211 NEDD1Q8NHV4 660 aa29.17■■■□□ 2.26
PTCH1-210ENST00000468211 TINF2Q9BSI4 451 aa29.17■■■□□ 2.26
PTCH1-210ENST00000468211 TEX13BQ9BXU2 312 aa29.17■■■□□ 2.26
PTCH1-210ENST00000468211 UBE2OQ9C0C9 1292 aaKnown RBP29.17■■■□□ 2.26
PTCH1-210ENST00000468211 NAPBQ9H115 298 aa29.17■■■□□ 2.26
PTCH1-210ENST00000468211 ZNF287Q9HBT7 754 aa29.17■■■□□ 2.26
PTCH1-210ENST00000468211 PLIN4Q96Q06 1357 aa29.16■■■□□ 2.26
PTCH1-210ENST00000468211 LTBP2Q14767 1821 aa29.16■■■□□ 2.26
PTCH1-210ENST00000468211 MYCNP04198 464 aaPredicted RBP29.16■■■□□ 2.26
PTCH1-210ENST00000468211 MCM3APO60318 1980 aa29.15■■■□□ 2.26
PTCH1-210ENST00000468211 TTLL1O95922 423 aa29.15■■■□□ 2.26
PTCH1-210ENST00000468211 RTP1P59025 263 aa29.15■■■□□ 2.26
PTCH1-210ENST00000468211 TDHQ8IZJ6 230 aa29.15■■■□□ 2.26
PTCH1-210ENST00000468211 CPXCR1Q8N123 301 aa29.15■■■□□ 2.26
PTCH1-210ENST00000468211 KIFC2Q96AC6 838 aa29.15■■■□□ 2.26
PTCH1-210ENST00000468211 INCENPQ9NQS7 918 aa29.15■■■□□ 2.26
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms