RNA–Protein interactions for RNA: ENST00000467885.6

USP39-213, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 338 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-213ENST00000467885 TRIM34Q9BYJ4 488 aa6.97□□□□□ -1.29
USP39-213ENST00000467885 FRMD4AQ9P2Q2 1039 aaPredicted RBP6.97□□□□□ -1.29
USP39-213ENST00000467885 ZBTB21Q9ULJ3 1066 aa6.97□□□□□ -1.29
USP39-213ENST00000467885 AFG3L2Q9Y4W6 797 aa6.97□□□□□ -1.29
USP39-213ENST00000467885 SLC12A7Q9Y666 1083 aa6.97□□□□□ -1.29
USP39-213ENST00000467885 ZHX2Q9Y6X8 837 aa6.97□□□□□ -1.29
USP39-213ENST00000467885 ADAMTSL1Q8N6G6 1762 aa6.97□□□□□ -1.29
USP39-213ENST00000467885 CCDC69A6NI79 296 aa6.96□□□□□ -1.3
USP39-213ENST00000467885 TOMM70O94826 608 aa6.96□□□□□ -1.3
USP39-213ENST00000467885 FDPSP14324 419 aaKnown RBP6.96□□□□□ -1.3
USP39-213ENST00000467885 RXRAP19793 462 aa6.96□□□□□ -1.3
USP39-213ENST00000467885 RCAN1P53805 252 aa6.96□□□□□ -1.3
USP39-213ENST00000467885 CCT2P78371 535 aaKnown RBP6.96□□□□□ -1.3
USP39-213ENST00000467885 FGD1P98174 961 aa6.96□□□□□ -1.3
USP39-213ENST00000467885 SPP2Q13103 211 aa6.96□□□□□ -1.3
USP39-213ENST00000467885 STK3Q13188 491 aa6.96□□□□□ -1.3
USP39-213ENST00000467885 RAB3GAP1Q15042 981 aa6.96□□□□□ -1.3
USP39-213ENST00000467885 PPP2R5BQ15173 497 aa6.96□□□□□ -1.3
USP39-213ENST00000467885 USP17L2Q6R6M4 530 aa6.96□□□□□ -1.3
USP39-213ENST00000467885 NOL8Q76FK4 1167 aaKnown RBP6.96□□□□□ -1.3
USP39-213ENST00000467885 NBPF11Q86T75 865 aa6.96□□□□□ -1.3
USP39-213ENST00000467885 RAB11FIP4Q86YS3 637 aa6.96□□□□□ -1.3
USP39-213ENST00000467885 ZNF654Q8IZM8 581 aa6.96□□□□□ -1.3
USP39-213ENST00000467885 STAG2Q8N3U4 1231 aa6.96□□□□□ -1.3
USP39-213ENST00000467885 SRBD1Q8N5C6 995 aaKnown RBP6.96□□□□□ -1.3
USP39-213ENST00000467885 ZNF784Q8NCA9 323 aaPredicted RBP6.96□□□□□ -1.3
USP39-213ENST00000467885 PNMA1Q8ND90 353 aa6.96□□□□□ -1.3
USP39-213ENST00000467885 INTS4Q96HW7 963 aaKnown RBP6.96□□□□□ -1.3
USP39-213ENST00000467885 CLMNQ96JQ2 1002 aa6.96□□□□□ -1.3
USP39-213ENST00000467885 WRNIP1Q96S55 665 aa6.96□□□□□ -1.3
USP39-213ENST00000467885 MYL10Q9BUA6 226 aa6.96□□□□□ -1.3
USP39-213ENST00000467885 KIAA1683Q9H0B3 1180 aa6.96□□□□□ -1.3
USP39-213ENST00000467885 SLKQ9H2G2 1235 aaPredicted RBP6.96□□□□□ -1.3
USP39-213ENST00000467885 KAT14Q9H8E8 782 aa6.96□□□□□ -1.3
USP39-213ENST00000467885 NCOA5Q9HCD5 579 aaKnown RBP6.96□□□□□ -1.3
USP39-213ENST00000467885 SH2B1Q9NRF2 756 aaPredicted RBP6.96□□□□□ -1.3
USP39-213ENST00000467885 EMILIN3Q9NT22 766 aa6.96□□□□□ -1.3
USP39-213ENST00000467885 MAD2L2Q9UI95 211 aa6.96□□□□□ -1.3
USP39-213ENST00000467885 SYNPO2Q9UMS6 1093 aa6.96□□□□□ -1.3
USP39-213ENST00000467885 STX8Q9UNK0 236 aa6.96□□□□□ -1.3
USP39-213ENST00000467885 SNCAIPQ9Y6H5 919 aa6.96□□□□□ -1.3
USP39-213ENST00000467885 PASKQ96RG2 1323 aa6.96□□□□□ -1.3
USP39-213ENST00000467885 MYH7P12883 1935 aa6.95□□□□□ -1.3
USP39-213ENST00000467885 AK9Q5TCS8 1911 aa6.95□□□□□ -1.3
USP39-213ENST00000467885 PLIN4Q96Q06 1357 aa6.95□□□□□ -1.3
USP39-213ENST00000467885 SSC5DA1L4H1 1573 aa6.95□□□□□ -1.3
USP39-213ENST00000467885 ZBTB43O43298 467 aa6.95□□□□□ -1.3
USP39-213ENST00000467885 CELF2O95319 508 aaKnown RBP6.95□□□□□ -1.3
USP39-213ENST00000467885 PDHBP11177 359 aa6.95□□□□□ -1.3
USP39-213ENST00000467885 YY1P25490 414 aa6.95□□□□□ -1.3
USP39-213ENST00000467885 SMARCA1P28370 1054 aa6.95□□□□□ -1.3
USP39-213ENST00000467885 NF2P35240 595 aa6.95□□□□□ -1.3
USP39-213ENST00000467885 DDIT3P35638 169 aa6.95□□□□□ -1.3
USP39-213ENST00000467885 ANP32AP39687 249 aaKnown RBP6.95□□□□□ -1.3
USP39-213ENST00000467885 IREB2P48200 963 aaKnown RBP6.95□□□□□ -1.3
USP39-213ENST00000467885 BACE1P56817 501 aa6.95□□□□□ -1.3
USP39-213ENST00000467885 FKBP1BP68106 108 aa6.95□□□□□ -1.3
USP39-213ENST00000467885 FOXK1P85037 733 aa6.95□□□□□ -1.3
USP39-213ENST00000467885 VGLL4Q14135 290 aa6.95□□□□□ -1.3
USP39-213ENST00000467885 BECN1Q14457 450 aa6.95□□□□□ -1.3
USP39-213ENST00000467885 GRM4Q14833 912 aa6.95□□□□□ -1.3
USP39-213ENST00000467885 SH3D19Q5HYK7 790 aa6.95□□□□□ -1.3
USP39-213ENST00000467885 PPP4R3BQ5MIZ7 849 aa6.95□□□□□ -1.3
USP39-213ENST00000467885 TTBK2Q6IQ55 1244 aa6.95□□□□□ -1.3
USP39-213ENST00000467885 SYNE3Q6ZMZ3 975 aa6.95□□□□□ -1.3
USP39-213ENST00000467885 NFXL1Q6ZNB6 911 aa6.95□□□□□ -1.3
USP39-213ENST00000467885 ARMC9Q7Z3E5 817 aa6.95□□□□□ -1.3
USP39-213ENST00000467885 CATIPQ7Z7H3 387 aa6.95□□□□□ -1.3
USP39-213ENST00000467885 ANKRD13AQ8IZ07 590 aa6.95□□□□□ -1.3
USP39-213ENST00000467885 CMTR1Q8N1G2 835 aaKnown RBP6.95□□□□□ -1.3
USP39-213ENST00000467885 C2orf69Q8N8R5 385 aa6.95□□□□□ -1.3
USP39-213ENST00000467885 ZNF280CQ8ND82 737 aa6.95□□□□□ -1.3
USP39-213ENST00000467885 GMCL1P1Q8NEA9 526 aa6.95□□□□□ -1.3
USP39-213ENST00000467885 SMARCC2Q8TAQ2 1214 aa6.95□□□□□ -1.3
USP39-213ENST00000467885 RBM46Q8TBY0 533 aaKnown RBP6.95□□□□□ -1.3
USP39-213ENST00000467885 SLC10A4Q96EP9 437 aa6.95□□□□□ -1.3
USP39-213ENST00000467885 SPDYE5A6NIY4 337 aa6.94□□□□□ -1.3
USP39-213ENST00000467885 C19orf81C9J6K1 198 aa6.94□□□□□ -1.3
USP39-213ENST00000467885 USP17L10C9JJH3 530 aa6.94□□□□□ -1.3
USP39-213ENST00000467885 KLRF2D3W0D1 207 aa6.94□□□□□ -1.3
USP39-213ENST00000467885 CXCL11O14625 94 aa6.94□□□□□ -1.3
USP39-213ENST00000467885 IRF6O14896 467 aa6.94□□□□□ -1.3
USP39-213ENST00000467885 CYTH3O43739 400 aa6.94□□□□□ -1.3
USP39-213ENST00000467885 PLA2G6O60733 806 aa6.94□□□□□ -1.3
USP39-213ENST00000467885 DDAH1O94760 285 aa6.94□□□□□ -1.3
USP39-213ENST00000467885 GOLGA8HP0CJ92 632 aa6.94□□□□□ -1.3
USP39-213ENST00000467885 CALM1P0DP23 149 aa6.94□□□□□ -1.3
USP39-213ENST00000467885 CALM2P0DP24 149 aa6.94□□□□□ -1.3
USP39-213ENST00000467885 CALM3P0DP25 149 aa6.94□□□□□ -1.3
USP39-213ENST00000467885 IFNAR1P17181 557 aa6.94□□□□□ -1.3
USP39-213ENST00000467885 GJA5P36382 358 aa6.94□□□□□ -1.3
USP39-213ENST00000467885 ATP2B2Q01814 1243 aa6.94□□□□□ -1.3
USP39-213ENST00000467885 ICA1Q05084 483 aa6.94□□□□□ -1.3
USP39-213ENST00000467885 PPATQ06203 517 aa6.94□□□□□ -1.3
USP39-213ENST00000467885 ZNF543Q08ER8 600 aa6.94□□□□□ -1.3
USP39-213ENST00000467885 MOGSQ13724 837 aa6.94□□□□□ -1.3
USP39-213ENST00000467885 PKN1Q16512 942 aa6.94□□□□□ -1.3
USP39-213ENST00000467885 SLFN13Q68D06 897 aa6.94□□□□□ -1.3
USP39-213ENST00000467885 BTNL9Q6UXG8 535 aa6.94□□□□□ -1.3
USP39-213ENST00000467885 RASGRP2Q7LDG7 609 aa6.94□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms