RNA–Protein interactions for RNA: ENST00000466192.5

COL9A3-205, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 2,194 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-205ENST00000466192 ZNF277Q9NRM2 450 aaPredicted RBP20.93■□□□□ 0.94
COL9A3-205ENST00000466192 ANO10Q9NW15 660 aa20.93■□□□□ 0.94
COL9A3-205ENST00000466192 KIAA1468Q9P260 1216 aa20.93■□□□□ 0.94
COL9A3-205ENST00000466192 CEP131Q9UPN4 1083 aa20.93■□□□□ 0.94
COL9A3-205ENST00000466192 USP17L5A8MUK1 530 aa20.92■□□□□ 0.94
COL9A3-205ENST00000466192 EIF6P56537 245 aaKnown RBP20.92■□□□□ 0.94
COL9A3-205ENST00000466192 WWC2Q6AWC2 1192 aa20.92■□□□□ 0.94
COL9A3-205ENST00000466192 SH3BP5LQ7L8J4 393 aa20.92■□□□□ 0.94
COL9A3-205ENST00000466192 IQCB1Q15051 598 aa20.92■□□□□ 0.94
COL9A3-205ENST00000466192 CFAP100Q494V2 611 aa20.92■□□□□ 0.94
COL9A3-205ENST00000466192 SPECC1Q5M775 1068 aa20.92■□□□□ 0.94
COL9A3-205ENST00000466192 LRRC47Q8N1G4 583 aaKnown RBP20.92■□□□□ 0.94
COL9A3-205ENST00000466192 DHX36Q9H2U1 1008 aaKnown RBP20.92■□□□□ 0.94
COL9A3-205ENST00000466192 TDRD3Q9H7E2 651 aaKnown RBP20.92■□□□□ 0.94
COL9A3-205ENST00000466192 NPM3O75607 178 aaKnown RBP20.91■□□□□ 0.94
COL9A3-205ENST00000466192 PDHBP11177 359 aa20.91■□□□□ 0.94
COL9A3-205ENST00000466192 CALML3P27482 149 aa20.91■□□□□ 0.94
COL9A3-205ENST00000466192 LARGE2Q8N3Y3 721 aa20.91■□□□□ 0.94
COL9A3-205ENST00000466192 PRMT6Q96LA8 375 aaPredicted RBP20.91■□□□□ 0.94
COL9A3-205ENST00000466192 TIGD1Q96MW7 591 aa20.91■□□□□ 0.94
COL9A3-205ENST00000466192 ZNF830Q96NB3 372 aaPredicted RBP20.91■□□□□ 0.94
COL9A3-205ENST00000466192 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP20.91■□□□□ 0.94
COL9A3-205ENST00000466192 FAM196BA6NMK8 535 aa20.9■□□□□ 0.94
COL9A3-205ENST00000466192 RAD17O75943 681 aa20.9■□□□□ 0.94
COL9A3-205ENST00000466192 PIK3AP1Q6ZUJ8 805 aa20.9■□□□□ 0.94
COL9A3-205ENST00000466192 BLIDQ8IZY5 108 aa20.9■□□□□ 0.94
COL9A3-205ENST00000466192 CLIP2Q9UDT6 1046 aa20.9■□□□□ 0.94
COL9A3-205ENST00000466192 SRPRBQ9Y5M8 271 aaKnown RBP20.9■□□□□ 0.94
COL9A3-205ENST00000466192 BRCA1P38398 1863 aaKnown RBP20.9■□□□□ 0.94
COL9A3-205ENST00000466192 STXBP3O00186 592 aa20.9■□□□□ 0.94
COL9A3-205ENST00000466192 TTLL1O95922 423 aa20.9■□□□□ 0.94
COL9A3-205ENST00000466192 RSBN1LQ6PCB5 846 aaPredicted RBP20.9■□□□□ 0.94
COL9A3-205ENST00000466192 HEATR3Q7Z4Q2 680 aa20.9■□□□□ 0.94
COL9A3-205ENST00000466192 SPC24Q8NBT2 197 aa20.9■□□□□ 0.94
COL9A3-205ENST00000466192 BARHL2Q9NY43 387 aa20.9■□□□□ 0.94
COL9A3-205ENST00000466192 PI4KBQ9UBF8 816 aa20.9■□□□□ 0.94
COL9A3-205ENST00000466192 PCDHA4Q9UN74 947 aa20.9■□□□□ 0.94
COL9A3-205ENST00000466192 MORC2Q9Y6X9 1032 aaPredicted RBP20.9■□□□□ 0.94
COL9A3-205ENST00000466192 GOLGA6L19H0YKK7 550 aa20.89■□□□□ 0.94
COL9A3-205ENST00000466192 ZRSR1Q15695 479 aaKnown RBP20.89■□□□□ 0.94
COL9A3-205ENST00000466192 GLIPR1L2Q4G1C9 344 aa20.89■□□□□ 0.94
COL9A3-205ENST00000466192 ZSCAN29Q8IWY8 852 aaPredicted RBP20.89■□□□□ 0.94
COL9A3-205ENST00000466192 KCNH3Q9ULD8 1083 aa20.89■□□□□ 0.94
COL9A3-205ENST00000466192 ATF5Q9Y2D1 282 aaPredicted RBP20.89■□□□□ 0.94
COL9A3-205ENST00000466192 PSMD14O00487 310 aa20.89■□□□□ 0.93
COL9A3-205ENST00000466192 MPHOSPH10O00566 681 aaKnown RBP20.89■□□□□ 0.93
COL9A3-205ENST00000466192 SMARCA1P28370 1054 aa20.89■□□□□ 0.93
COL9A3-205ENST00000466192 TTC38Q5R3I4 469 aa20.89■□□□□ 0.93
COL9A3-205ENST00000466192 ZNF579Q8NAF0 562 aaKnown RBP20.89■□□□□ 0.93
COL9A3-205ENST00000466192 TRIM5Q9C035 493 aa20.89■□□□□ 0.93
COL9A3-205ENST00000466192 FRMPD2Q68DX3 1309 aaPredicted RBP20.88■□□□□ 0.93
COL9A3-205ENST00000466192 M0R2N6 131 aa20.88■□□□□ 0.93
COL9A3-205ENST00000466192 BIN1O00499 593 aa20.88■□□□□ 0.93
COL9A3-205ENST00000466192 VIL1P09327 827 aaKnown RBP20.88■□□□□ 0.93
COL9A3-205ENST00000466192 SNHG28P0DPA3 235 aa20.88■□□□□ 0.93
COL9A3-205ENST00000466192 ZNF174Q15697 407 aa20.88■□□□□ 0.93
COL9A3-205ENST00000466192 CEP57L1Q8IYX8 460 aa20.88■□□□□ 0.93
COL9A3-205ENST00000466192 CCDC17Q96LX7 622 aa20.88■□□□□ 0.93
COL9A3-205ENST00000466192 UBA5Q9GZZ9 404 aa20.88■□□□□ 0.93
COL9A3-205ENST00000466192 TTC12Q9H892 705 aaPredicted RBP20.88■□□□□ 0.93
COL9A3-205ENST00000466192 BECN2A8MW95 431 aa20.87■□□□□ 0.93
COL9A3-205ENST00000466192 HOMER1Q86YM7 354 aa20.87■□□□□ 0.93
COL9A3-205ENST00000466192 CCDC125Q86Z20 511 aa20.87■□□□□ 0.93
COL9A3-205ENST00000466192 CCDC148Q8NFR7 591 aa20.87■□□□□ 0.93
COL9A3-205ENST00000466192 RASGRP4Q8TDF6 673 aa20.87■□□□□ 0.93
COL9A3-205ENST00000466192 GMLQ99445 158 aa20.87■□□□□ 0.93
COL9A3-205ENST00000466192 VAT1LQ9HCJ6 419 aa20.87■□□□□ 0.93
COL9A3-205ENST00000466192 FER1L6Q2WGJ9 1857 aa20.87■□□□□ 0.93
COL9A3-205ENST00000466192 ZNF500O60304 480 aaPredicted RBP20.87■□□□□ 0.93
COL9A3-205ENST00000466192 TRAPPC10P48553 1259 aa20.87■□□□□ 0.93
COL9A3-205ENST00000466192 SHROOM1Q2M3G4 852 aaPredicted RBP20.87■□□□□ 0.93
COL9A3-205ENST00000466192 DPCR1Q3MIW9 517 aa20.87■□□□□ 0.93
COL9A3-205ENST00000466192 LONRF3Q496Y0 759 aa20.87■□□□□ 0.93
COL9A3-205ENST00000466192 DHX40Q8IX18 779 aaKnown RBP20.87■□□□□ 0.93
COL9A3-205ENST00000466192 RRP36Q96EU6 259 aaKnown RBP20.87■□□□□ 0.93
COL9A3-205ENST00000466192 CSRNP2Q9H175 543 aa20.87■□□□□ 0.93
COL9A3-205ENST00000466192 RIOX1Q9H6W3 641 aa20.87■□□□□ 0.93
COL9A3-205ENST00000466192 PIM2Q9P1W9 311 aa20.87■□□□□ 0.93
COL9A3-205ENST00000466192 TGFB2P61812 414 aa20.86■□□□□ 0.93
COL9A3-205ENST00000466192 ASPRV1Q53RT3 343 aa20.86■□□□□ 0.93
COL9A3-205ENST00000466192 DAGLBQ8NCG7 672 aa20.86■□□□□ 0.93
COL9A3-205ENST00000466192 PIGSQ96S52 555 aa20.86■□□□□ 0.93
COL9A3-205ENST00000466192 NAT10Q9H0A0 1025 aaKnown RBP20.86■□□□□ 0.93
COL9A3-205ENST00000466192 ENTPD3O75355 529 aa20.86■□□□□ 0.93
COL9A3-205ENST00000466192 BMP15O95972 392 aa20.86■□□□□ 0.93
COL9A3-205ENST00000466192 USP49Q70CQ1 688 aa20.86■□□□□ 0.93
COL9A3-205ENST00000466192 FAM13BQ9NYF5 915 aa20.86■□□□□ 0.93
COL9A3-205ENST00000466192 PCDHA6Q9UN73 950 aa20.86■□□□□ 0.93
COL9A3-205ENST00000466192 ZBTB12Q9Y330 459 aaPredicted RBP20.86■□□□□ 0.93
COL9A3-205ENST00000466192 PCDHA8Q9Y5H6 950 aa20.86■□□□□ 0.93
COL9A3-205ENST00000466192 ATRNL1Q5VV63 1379 aa20.86■□□□□ 0.93
COL9A3-205ENST00000466192 PTGDRQ13258 359 aa20.85■□□□□ 0.93
COL9A3-205ENST00000466192 CERKLQ49MI3 558 aaPredicted RBP20.85■□□□□ 0.93
COL9A3-205ENST00000466192 GALNT17Q6IS24 598 aa20.85■□□□□ 0.93
COL9A3-205ENST00000466192 TATDN1Q6P1N9 297 aa20.85■□□□□ 0.93
COL9A3-205ENST00000466192 KRBA2Q6ZNG9 492 aa20.85■□□□□ 0.93
COL9A3-205ENST00000466192 PLA2G4DQ86XP0 818 aa20.85■□□□□ 0.93
COL9A3-205ENST00000466192 FOXP4Q8IVH2 680 aaPredicted RBP20.85■□□□□ 0.93
COL9A3-205ENST00000466192 AOPEPQ8N6M6 819 aa20.85■□□□□ 0.93
COL9A3-205ENST00000466192 VPS33BQ9H267 617 aa20.85■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms