RNA–Protein interactions for RNA: ENST00000465039.5

LIMD1-203, Transcript of LIM domains containing 1, humanhuman

TSL 5

Gene LIMD1, Length 676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-203ENST00000465039 SNHG28P0DPA3 235 aa16.1■□□□□ 0.17
LIMD1-203ENST00000465039 BMP3P12645 472 aa16.1■□□□□ 0.17
LIMD1-203ENST00000465039 DSG3P32926 999 aa16.1■□□□□ 0.17
LIMD1-203ENST00000465039 MCM5P33992 734 aa16.1■□□□□ 0.17
LIMD1-203ENST00000465039 COPB2P35606 906 aa16.1■□□□□ 0.17
LIMD1-203ENST00000465039 SLFN13Q68D06 897 aa16.1■□□□□ 0.17
LIMD1-203ENST00000465039 STOX1Q6ZVD7 989 aa16.1■□□□□ 0.17
LIMD1-203ENST00000465039 FAM160B2Q86V87 743 aa16.1■□□□□ 0.17
LIMD1-203ENST00000465039 MB21D2Q8IYB1 491 aaPredicted RBP16.1■□□□□ 0.17
LIMD1-203ENST00000465039 LRRC47Q8N1G4 583 aaKnown RBP16.1■□□□□ 0.17
LIMD1-203ENST00000465039 PRPF38AQ8NAV1 312 aaKnown RBP16.1■□□□□ 0.17
LIMD1-203ENST00000465039 GPRC5AQ8NFJ5 357 aa16.1■□□□□ 0.17
LIMD1-203ENST00000465039 CPA4Q9UI42 421 aa16.1■□□□□ 0.17
LIMD1-203ENST00000465039 PPP1R9AQ9ULJ8 1098 aa16.1■□□□□ 0.17
LIMD1-203ENST00000465039 SLC1A4P43007 532 aa16.09■□□□□ 0.17
LIMD1-203ENST00000465039 STAT2P52630 851 aa16.09■□□□□ 0.17
LIMD1-203ENST00000465039 FCGRTP55899 365 aa16.09■□□□□ 0.17
LIMD1-203ENST00000465039 SEC23AQ15436 765 aa16.09■□□□□ 0.17
LIMD1-203ENST00000465039 FAM83BQ5T0W9 1011 aa16.09■□□□□ 0.17
LIMD1-203ENST00000465039 GPATCH4Q5T3I0 446 aaKnown RBP16.09■□□□□ 0.17
LIMD1-203ENST00000465039 TMTC2Q8N394 836 aa16.09■□□□□ 0.17
LIMD1-203ENST00000465039 SHCBP1Q8NEM2 672 aa16.09■□□□□ 0.17
LIMD1-203ENST00000465039 CHURC1Q8WUH1 139 aa16.09■□□□□ 0.17
LIMD1-203ENST00000465039 TMEM87BQ96K49 555 aa16.09■□□□□ 0.17
LIMD1-203ENST00000465039 SLF1Q9BQI6 1058 aa16.09■□□□□ 0.17
LIMD1-203ENST00000465039 RBPJLQ9UBG7 517 aa16.09■□□□□ 0.17
LIMD1-203ENST00000465039 PNMA2Q9UL42 364 aa16.09■□□□□ 0.17
LIMD1-203ENST00000465039 ATP2A1O14983 1001 aa16.08■□□□□ 0.16
LIMD1-203ENST00000465039 MCCP23508 829 aa16.08■□□□□ 0.16
LIMD1-203ENST00000465039 HOXD10P28358 340 aa16.08■□□□□ 0.16
LIMD1-203ENST00000465039 MAPK4P31152 587 aa16.08■□□□□ 0.16
LIMD1-203ENST00000465039 OAZ1P54368 228 aa16.08■□□□□ 0.16
LIMD1-203ENST00000465039 ERVK-9P63128 1117 aa16.08■□□□□ 0.16
LIMD1-203ENST00000465039 ERVK-24P63145 666 aa16.08■□□□□ 0.16
LIMD1-203ENST00000465039 IFIT1BQ5T764 474 aaKnown RBP16.08■□□□□ 0.16
LIMD1-203ENST00000465039 ANKRD13CQ8N6S4 541 aa16.08■□□□□ 0.16
LIMD1-203ENST00000465039 PNMA1Q8ND90 353 aa16.08■□□□□ 0.16
LIMD1-203ENST00000465039 KAT14Q9H8E8 782 aa16.08■□□□□ 0.16
LIMD1-203ENST00000465039 MGAMO43451 1857 aa16.08■□□□□ 0.16
LIMD1-203ENST00000465039 PDHBP11177 359 aa16.07■□□□□ 0.16
LIMD1-203ENST00000465039 LIFRP42702 1097 aa16.07■□□□□ 0.16
LIMD1-203ENST00000465039 BTNL9Q6UXG8 535 aa16.07■□□□□ 0.16
LIMD1-203ENST00000465039 EFCC1Q9HA90 598 aa16.07■□□□□ 0.16
LIMD1-203ENST00000465039 TAF6LQ9Y6J9 622 aa16.07■□□□□ 0.16
LIMD1-203ENST00000465039 ZNF236Q9UL36 1845 aa16.06■□□□□ 0.16
LIMD1-203ENST00000465039 VWA5AO00534 786 aa16.06■□□□□ 0.16
LIMD1-203ENST00000465039 IFIT3O14879 490 aaKnown RBP16.06■□□□□ 0.16
LIMD1-203ENST00000465039 ASPRV1Q53RT3 343 aa16.06■□□□□ 0.16
LIMD1-203ENST00000465039 CYB5R4Q7L1T6 521 aa16.06■□□□□ 0.16
LIMD1-203ENST00000465039 OTOP1Q7RTM1 612 aa16.06■□□□□ 0.16
LIMD1-203ENST00000465039 CD99L2Q8TCZ2 262 aa16.06■□□□□ 0.16
LIMD1-203ENST00000465039 SOCS4Q8WXH5 440 aa16.06■□□□□ 0.16
LIMD1-203ENST00000465039 NEK1Q96PY6 1258 aa16.06■□□□□ 0.16
LIMD1-203ENST00000465039 MAP3K14Q99558 947 aa16.06■□□□□ 0.16
LIMD1-203ENST00000465039 USP26Q9BXU7 913 aa16.06■□□□□ 0.16
LIMD1-203ENST00000465039 TXNRD2Q9NNW7 524 aa16.06■□□□□ 0.16
LIMD1-203ENST00000465039 PRC1O43663 620 aa16.05■□□□□ 0.16
LIMD1-203ENST00000465039 RAD21O60216 631 aa16.05■□□□□ 0.16
LIMD1-203ENST00000465039 SLC25A27O95847 323 aa16.05■□□□□ 0.16
LIMD1-203ENST00000465039 PSMA5P28066 241 aa16.05■□□□□ 0.16
LIMD1-203ENST00000465039 PSMC4P43686 418 aa16.05■□□□□ 0.16
LIMD1-203ENST00000465039 ANTXR2P58335 489 aa16.05■□□□□ 0.16
LIMD1-203ENST00000465039 ANAPC15P60006 121 aa16.05■□□□□ 0.16
LIMD1-203ENST00000465039 ZNF543Q08ER8 600 aa16.05■□□□□ 0.16
LIMD1-203ENST00000465039 WTAPQ15007 396 aa16.05■□□□□ 0.16
LIMD1-203ENST00000465039 FBXO46Q6PJ61 603 aaPredicted RBP16.05■□□□□ 0.16
LIMD1-203ENST00000465039 POTEEQ6S8J3 1075 aa16.05■□□□□ 0.16
LIMD1-203ENST00000465039 DHX32Q7L7V1 743 aaKnown RBP16.05■□□□□ 0.16
LIMD1-203ENST00000465039 FBXL16Q8N461 479 aa16.05■□□□□ 0.16
LIMD1-203ENST00000465039 NKX2-3Q8TAU0 364 aa16.05■□□□□ 0.16
LIMD1-203ENST00000465039 COA7Q96BR5 231 aa16.05■□□□□ 0.16
LIMD1-203ENST00000465039 ATG4CQ96DT6 458 aa16.05■□□□□ 0.16
LIMD1-203ENST00000465039 IL17RAQ96F46 866 aa16.05■□□□□ 0.16
LIMD1-203ENST00000465039 TRIM47Q96LD4 638 aa16.05■□□□□ 0.16
LIMD1-203ENST00000465039 ZKSCAN3Q9BRR0 538 aa16.05■□□□□ 0.16
LIMD1-203ENST00000465039 TEX13BQ9BXU2 312 aa16.05■□□□□ 0.16
LIMD1-203ENST00000465039 MROH8Q9H579 483 aa16.05■□□□□ 0.16
LIMD1-203ENST00000465039 SLC38A10Q9HBR0 1119 aa16.05■□□□□ 0.16
LIMD1-203ENST00000465039 TNPO2O14787 897 aaKnown RBP16.04■□□□□ 0.16
LIMD1-203ENST00000465039 CNMDO75829 334 aa16.04■□□□□ 0.16
LIMD1-203ENST00000465039 DDAH1O94760 285 aa16.04■□□□□ 0.16
LIMD1-203ENST00000465039 RCAN1P53805 252 aa16.04■□□□□ 0.16
LIMD1-203ENST00000465039 IRF5Q13568 498 aa16.04■□□□□ 0.16
LIMD1-203ENST00000465039 TMEM67Q5HYA8 995 aa16.04■□□□□ 0.16
LIMD1-203ENST00000465039 DHX30Q7L2E3 1194 aaKnown RBP eCLIP16.04■□□□□ 0.16
LIMD1-203ENST00000465039 SGMS1Q86VZ5 419 aa16.04■□□□□ 0.16
LIMD1-203ENST00000465039 RASEFQ8IZ41 740 aa16.04■□□□□ 0.16
LIMD1-203ENST00000465039 ABRAQ8N0Z2 381 aa16.04■□□□□ 0.16
LIMD1-203ENST00000465039 REPS2Q8NFH8 660 aa16.04■□□□□ 0.16
LIMD1-203ENST00000465039 IGDCC4Q8TDY8 1250 aa16.04■□□□□ 0.16
LIMD1-203ENST00000465039 NUP88Q99567 741 aaPredicted RBP16.04■□□□□ 0.16
LIMD1-203ENST00000465039 TM6SF1Q9BZW5 370 aa16.04■□□□□ 0.16
LIMD1-203ENST00000465039 SPATC1LQ9H0A9 340 aa16.04■□□□□ 0.16
LIMD1-203ENST00000465039 FBXO28Q9NVF7 368 aa16.04■□□□□ 0.16
LIMD1-203ENST00000465039 SRRDQ9UH36 339 aa16.04■□□□□ 0.16
LIMD1-203ENST00000465039 ZNF214Q9UL59 606 aaPredicted RBP16.04■□□□□ 0.16
LIMD1-203ENST00000465039 TRIM17Q9Y577 477 aa16.04■□□□□ 0.16
LIMD1-203ENST00000465039 TMEM232C9JQI7 657 aa16.03■□□□□ 0.16
LIMD1-203ENST00000465039 SH2B2O14492 632 aaPredicted RBP16.03■□□□□ 0.16
LIMD1-203ENST00000465039 STRNO43815 780 aa16.03■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms