RNA–Protein interactions for RNA: ENST00000464635.1

USP54-209, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 531 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-209ENST00000464635 IRX3P78415 501 aaPredicted RBP13.78□□□□□ -0.2
USP54-209ENST00000464635 PABPC4Q13310 644 aaKnown RBP eCLIP13.78□□□□□ -0.2
USP54-209ENST00000464635 ZYXQ15942 572 aaKnown RBP13.78□□□□□ -0.2
USP54-209ENST00000464635 SLAIN1Q8ND83 568 aa13.78□□□□□ -0.2
USP54-209ENST00000464635 GTF3C6Q969F1 213 aa13.78□□□□□ -0.2
USP54-209ENST00000464635 NBPF3Q9H094 633 aa13.78□□□□□ -0.2
USP54-209ENST00000464635 UNC93B1Q9H1C4 597 aa13.78□□□□□ -0.2
USP54-209ENST00000464635 EMILIN3Q9NT22 766 aa13.78□□□□□ -0.2
USP54-209ENST00000464635 GINM1Q9NU53 330 aa13.78□□□□□ -0.2
USP54-209ENST00000464635 TMOD4Q9NZQ9 345 aa13.78□□□□□ -0.2
USP54-209ENST00000464635 BIN2Q9UBW5 565 aaPredicted RBP13.78□□□□□ -0.2
USP54-209ENST00000464635 SMC3Q9UQE7 1217 aa13.78□□□□□ -0.2
USP54-209ENST00000464635 KIF3AQ9Y496 699 aa13.78□□□□□ -0.2
USP54-209ENST00000464635 ALPK3Q96L96 1907 aa13.78□□□□□ -0.2
USP54-209ENST00000464635 USP17L10C9JJH3 530 aa13.77□□□□□ -0.21
USP54-209ENST00000464635 SMIM22K7EJ46 135 aa13.77□□□□□ -0.21
USP54-209ENST00000464635 PRKAB2O43741 272 aa13.77□□□□□ -0.21
USP54-209ENST00000464635 ORC4O43929 436 aa13.77□□□□□ -0.21
USP54-209ENST00000464635 INHAP05111 366 aa13.77□□□□□ -0.21
USP54-209ENST00000464635 CPA1P15085 419 aa13.77□□□□□ -0.21
USP54-209ENST00000464635 HMGN5P82970 282 aaKnown RBP13.77□□□□□ -0.21
USP54-209ENST00000464635 FGD1P98174 961 aa13.77□□□□□ -0.21
USP54-209ENST00000464635 PPARAQ07869 468 aa13.77□□□□□ -0.21
USP54-209ENST00000464635 RLFQ13129 1914 aa13.77□□□□□ -0.21
USP54-209ENST00000464635 SART3Q15020 963 aaKnown RBP13.77□□□□□ -0.21
USP54-209ENST00000464635 PARP14Q460N5 1801 aa13.77□□□□□ -0.21
USP54-209ENST00000464635 POTEEQ6S8J3 1075 aa13.77□□□□□ -0.21
USP54-209ENST00000464635 SLC44A5Q8NCS7 719 aa13.77□□□□□ -0.21
USP54-209ENST00000464635 ACER1Q8TDN7 264 aa13.77□□□□□ -0.21
USP54-209ENST00000464635 P2RX7Q99572 595 aaKnown RBP13.77□□□□□ -0.21
USP54-209ENST00000464635 TXNRD2Q9NNW7 524 aa13.77□□□□□ -0.21
USP54-209ENST00000464635 DCP1AQ9NPI6 582 aaPredicted RBP13.77□□□□□ -0.21
USP54-209ENST00000464635 A0A0G2JMZ2 1700 aa13.76□□□□□ -0.21
USP54-209ENST00000464635 NID2Q14112 1375 aa13.76□□□□□ -0.21
USP54-209ENST00000464635 DDX11L8A8MPP1 907 aa13.76□□□□□ -0.21
USP54-209ENST00000464635 C19orf81C9J6K1 198 aa13.76□□□□□ -0.21
USP54-209ENST00000464635 PRC1O43663 620 aa13.76□□□□□ -0.21
USP54-209ENST00000464635 POLR3DP05423 398 aaPredicted RBP13.76□□□□□ -0.21
USP54-209ENST00000464635 HOXA7P31268 230 aaPredicted RBP13.76□□□□□ -0.21
USP54-209ENST00000464635 GUCY1A2P33402 732 aa13.76□□□□□ -0.21
USP54-209ENST00000464635 HERVK_113P62684 666 aa13.76□□□□□ -0.21
USP54-209ENST00000464635 GABPAQ06546 454 aa13.76□□□□□ -0.21
USP54-209ENST00000464635 IRF5Q13568 498 aa13.76□□□□□ -0.21
USP54-209ENST00000464635 ABCB5Q2M3G0 1257 aa13.76□□□□□ -0.21
USP54-209ENST00000464635 CERKLQ49MI3 558 aaPredicted RBP13.76□□□□□ -0.21
USP54-209ENST00000464635 CCDC178Q5BJE1 867 aa13.76□□□□□ -0.21
USP54-209ENST00000464635 TTC6Q86TZ1 520 aa13.76□□□□□ -0.21
USP54-209ENST00000464635 SPRYD3Q8NCJ5 442 aa13.76□□□□□ -0.21
USP54-209ENST00000464635 SMARCC2Q8TAQ2 1214 aa13.76□□□□□ -0.21
USP54-209ENST00000464635 IGDCC4Q8TDY8 1250 aa13.76□□□□□ -0.21
USP54-209ENST00000464635 ESR2Q92731 530 aa13.76□□□□□ -0.21
USP54-209ENST00000464635 TNPO1Q92973 898 aaKnown RBP13.76□□□□□ -0.21
USP54-209ENST00000464635 BRF1Q92994 677 aa13.76□□□□□ -0.21
USP54-209ENST00000464635 COA7Q96BR5 231 aa13.76□□□□□ -0.21
USP54-209ENST00000464635 FEZ1Q99689 392 aa13.76□□□□□ -0.21
USP54-209ENST00000464635 RNF208Q9H0X6 261 aa13.76□□□□□ -0.21
USP54-209ENST00000464635 ZNF287Q9HBT7 754 aa13.76□□□□□ -0.21
USP54-209ENST00000464635 MORF4L1Q9UBU8 362 aa13.76□□□□□ -0.21
USP54-209ENST00000464635 ATP6V1DQ9Y5K8 247 aa13.76□□□□□ -0.21
USP54-209ENST00000464635 ROBO3Q96MS0 1386 aa13.75□□□□□ -0.21
USP54-209ENST00000464635 GJB1P08034 283 aa13.75□□□□□ -0.21
USP54-209ENST00000464635 PDIA3P30101 505 aaKnown RBP13.75□□□□□ -0.21
USP54-209ENST00000464635 MCM4P33991 863 aa13.75□□□□□ -0.21
USP54-209ENST00000464635 GJA8P48165 433 aa13.75□□□□□ -0.21
USP54-209ENST00000464635 ANTXR2P58335 489 aa13.75□□□□□ -0.21
USP54-209ENST00000464635 HAND2P61296 217 aa13.75□□□□□ -0.21
USP54-209ENST00000464635 UBXN2AP68543 259 aa13.75□□□□□ -0.21
USP54-209ENST00000464635 CTR9Q6PD62 1173 aa13.75□□□□□ -0.21
USP54-209ENST00000464635 USP17L2Q6R6M4 530 aa13.75□□□□□ -0.21
USP54-209ENST00000464635 TBC1D10CQ8IV04 446 aa13.75□□□□□ -0.21
USP54-209ENST00000464635 AMOTL1Q8IY63 956 aa13.75□□□□□ -0.21
USP54-209ENST00000464635 DYNLL2Q96FJ2 89 aa13.75□□□□□ -0.21
USP54-209ENST00000464635 MCM9Q9NXL9 1143 aa13.75□□□□□ -0.21
USP54-209ENST00000464635 FRMPD3Q5JV73 1810 aa13.75□□□□□ -0.21
USP54-209ENST00000464635 CYP2D7A0A087X1C5 515 aa13.74□□□□□ -0.21
USP54-209ENST00000464635 GOLGA6L22H0YM25 854 aa13.74□□□□□ -0.21
USP54-209ENST00000464635 SH2B2O14492 632 aaPredicted RBP13.74□□□□□ -0.21
USP54-209ENST00000464635 PDE4BQ07343 736 aa13.74□□□□□ -0.21
USP54-209ENST00000464635 SEPT2Q15019 361 aa13.74□□□□□ -0.21
USP54-209ENST00000464635 C12orf60Q5U649 245 aa13.74□□□□□ -0.21
USP54-209ENST00000464635 UBE2Q1Q7Z7E8 422 aa13.74□□□□□ -0.21
USP54-209ENST00000464635 CLEC10AQ8IUN9 316 aa13.74□□□□□ -0.21
USP54-209ENST00000464635 PXYLP1Q8TE99 480 aa13.74□□□□□ -0.21
USP54-209ENST00000464635 U2AF1L4Q8WU68 220 aaKnown RBP13.74□□□□□ -0.21
USP54-209ENST00000464635 C12orf42Q96LP6 360 aa13.74□□□□□ -0.21
USP54-209ENST00000464635 PAGR1Q9BTK6 254 aa13.74□□□□□ -0.21
USP54-209ENST00000464635 ZSWIM5Q9P217 1185 aa13.74□□□□□ -0.21
USP54-209ENST00000464635 RBPJLQ9UBG7 517 aa13.74□□□□□ -0.21
USP54-209ENST00000464635 GJD2Q9UKL4 321 aa13.74□□□□□ -0.21
USP54-209ENST00000464635 DDX52Q9Y2R4 599 aaKnown RBP eCLIP13.74□□□□□ -0.21
USP54-209ENST00000464635 GREB1LQ9C091 1923 aaPredicted RBP13.74□□□□□ -0.21
USP54-209ENST00000464635 COL11A1P12107 1806 aaPredicted RBP13.74□□□□□ -0.21
USP54-209ENST00000464635 STX6O43752 255 aa13.73□□□□□ -0.21
USP54-209ENST00000464635 CNMDO75829 334 aa13.73□□□□□ -0.21
USP54-209ENST00000464635 LARGE1O95461 756 aa13.73□□□□□ -0.21
USP54-209ENST00000464635 VCAM1P19320 739 aa13.73□□□□□ -0.21
USP54-209ENST00000464635 ST3GAL1Q11201 340 aa13.73□□□□□ -0.21
USP54-209ENST00000464635 TRIM32Q13049 653 aa13.73□□□□□ -0.21
USP54-209ENST00000464635 SKOR2Q2VWA4 1001 aaPredicted RBP13.73□□□□□ -0.21
USP54-209ENST00000464635 Q3C1V9 767 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms