RNA–Protein interactions for RNA: ENST00000462817.5

LIMS1-211, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 4

Gene LIMS1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-211ENST00000462817 TOMM22Q9NS69 142 aa18.42■□□□□ 0.54
LIMS1-211ENST00000462817 A0A0D9SFI3 127 aa18.41■□□□□ 0.54
LIMS1-211ENST00000462817 PRKAR2AP13861 404 aaKnown RBP18.41■□□□□ 0.54
LIMS1-211ENST00000462817 ERCC3P19447 782 aa18.41■□□□□ 0.54
LIMS1-211ENST00000462817 TRIM32Q13049 653 aa18.41■□□□□ 0.54
LIMS1-211ENST00000462817 NEDD1Q8NHV4 660 aa18.41■□□□□ 0.54
LIMS1-211ENST00000462817 PAK6Q9NQU5 681 aaPredicted RBP18.41■□□□□ 0.54
LIMS1-211ENST00000462817 DIAPH3Q9NSV4 1193 aa18.41■□□□□ 0.54
LIMS1-211ENST00000462817 MTMR4Q9NYA4 1195 aa18.41■□□□□ 0.54
LIMS1-211ENST00000462817 HIP1O00291 1037 aa18.4■□□□□ 0.54
LIMS1-211ENST00000462817 STRNO43815 780 aa18.4■□□□□ 0.54
LIMS1-211ENST00000462817 FARP2O94887 1054 aaPredicted RBP18.4■□□□□ 0.54
LIMS1-211ENST00000462817 SDSP20132 328 aa18.4■□□□□ 0.54
LIMS1-211ENST00000462817 MFSD14CQ5VZR4 134 aa18.4■□□□□ 0.54
LIMS1-211ENST00000462817 SHCBP1Q8NEM2 672 aa18.4■□□□□ 0.54
LIMS1-211ENST00000462817 USP6NLQ92738 828 aa18.4■□□□□ 0.54
LIMS1-211ENST00000462817 DPF3Q92784 378 aa18.4■□□□□ 0.54
LIMS1-211ENST00000462817 NUP88Q99567 741 aaPredicted RBP18.4■□□□□ 0.54
LIMS1-211ENST00000462817 HTATIP2Q9BUP3 242 aa18.4■□□□□ 0.54
LIMS1-211ENST00000462817 MROH8Q9H579 483 aa18.4■□□□□ 0.54
LIMS1-211ENST00000462817 FBXO28Q9NVF7 368 aa18.4■□□□□ 0.54
LIMS1-211ENST00000462817 SLC5A4Q9NY91 659 aa18.4■□□□□ 0.54
LIMS1-211ENST00000462817 PPP1R9AQ9ULJ8 1098 aa18.4■□□□□ 0.54
LIMS1-211ENST00000462817 CCDC171Q6TFL3 1326 aa18.4■□□□□ 0.54
LIMS1-211ENST00000462817 IGKV6D-41A0A0C4DH26 115 aa18.39■□□□□ 0.53
LIMS1-211ENST00000462817 RANBP6O60518 1105 aaKnown RBP18.39■□□□□ 0.53
LIMS1-211ENST00000462817 SLC25A27O95847 323 aa18.39■□□□□ 0.53
LIMS1-211ENST00000462817 NDUFB10O96000 172 aa18.39■□□□□ 0.53
LIMS1-211ENST00000462817 GRB14Q14449 540 aa18.39■□□□□ 0.53
LIMS1-211ENST00000462817 ALX1Q15699 326 aa18.39■□□□□ 0.53
LIMS1-211ENST00000462817 CCL14Q16627 93 aa18.39■□□□□ 0.53
LIMS1-211ENST00000462817 LRRC47Q8N1G4 583 aaKnown RBP18.39■□□□□ 0.53
LIMS1-211ENST00000462817 SLF1Q9BQI6 1058 aa18.39■□□□□ 0.53
LIMS1-211ENST00000462817 STX8Q9UNK0 236 aa18.39■□□□□ 0.53
LIMS1-211ENST00000462817 BRCA2P51587 3418 aa18.39■□□□□ 0.53
LIMS1-211ENST00000462817 PLXNB2O15031 1838 aa18.39■□□□□ 0.53
LIMS1-211ENST00000462817 VWA5AO00534 786 aa18.38■□□□□ 0.53
LIMS1-211ENST00000462817 FGAP02671 866 aa18.38■□□□□ 0.53
LIMS1-211ENST00000462817 HSPD1P10809 573 aaKnown RBP18.38■□□□□ 0.53
LIMS1-211ENST00000462817 ADORA2AP29274 412 aa18.38■□□□□ 0.53
LIMS1-211ENST00000462817 CACNB2Q08289 660 aaPredicted RBP18.38■□□□□ 0.53
LIMS1-211ENST00000462817 TMEM132BQ14DG7 1078 aa18.38■□□□□ 0.53
LIMS1-211ENST00000462817 RRP12Q5JTH9 1297 aaKnown RBP18.38■□□□□ 0.53
LIMS1-211ENST00000462817 CWC27Q6UX04 472 aaKnown RBP18.38■□□□□ 0.53
LIMS1-211ENST00000462817 MKL1Q969V6 931 aa18.38■□□□□ 0.53
LIMS1-211ENST00000462817 ANAPC4Q9UJX5 808 aa18.38■□□□□ 0.53
LIMS1-211ENST00000462817 SYNPO2Q9UMS6 1093 aa18.38■□□□□ 0.53
LIMS1-211ENST00000462817 FOXP2O15409 715 aa18.37■□□□□ 0.53
LIMS1-211ENST00000462817 ZBED4O75132 1171 aa18.37■□□□□ 0.53
LIMS1-211ENST00000462817 FCER1AP12319 257 aa18.37■□□□□ 0.53
LIMS1-211ENST00000462817 STAT3P40763 770 aa18.37■□□□□ 0.53
LIMS1-211ENST00000462817 SLC4A3P48751 1232 aa18.37■□□□□ 0.53
LIMS1-211ENST00000462817 IKQ13123 557 aaPredicted RBP18.37■□□□□ 0.53
LIMS1-211ENST00000462817 SLFN13Q68D06 897 aa18.37■□□□□ 0.53
LIMS1-211ENST00000462817 ZNF589Q86UQ0 364 aaPredicted RBP18.37■□□□□ 0.53
LIMS1-211ENST00000462817 PRPF38AQ8NAV1 312 aaKnown RBP18.37■□□□□ 0.53
LIMS1-211ENST00000462817 KIFC2Q96AC6 838 aa18.37■□□□□ 0.53
LIMS1-211ENST00000462817 INCENPQ9NQS7 918 aa18.37■□□□□ 0.53
LIMS1-211ENST00000462817 GREB1LQ9C091 1923 aaPredicted RBP18.37■□□□□ 0.53
LIMS1-211ENST00000462817 HOXC6P09630 235 aa18.36■□□□□ 0.53
LIMS1-211ENST00000462817 CNGA1P29973 690 aa18.36■□□□□ 0.53
LIMS1-211ENST00000462817 COPB2P35606 906 aa18.36■□□□□ 0.53
LIMS1-211ENST00000462817 MAP3K21Q5TCX8 1036 aa18.36■□□□□ 0.53
LIMS1-211ENST00000462817 GMCL1P1Q8NEA9 526 aa18.36■□□□□ 0.53
LIMS1-211ENST00000462817 PLIN4Q96Q06 1357 aa18.36■□□□□ 0.53
LIMS1-211ENST00000462817 CRISPLD2Q9H0B8 497 aa18.36■□□□□ 0.53
LIMS1-211ENST00000462817 FEM1BQ9UK73 627 aa18.36■□□□□ 0.53
LIMS1-211ENST00000462817 ADAMTS5Q9UNA0 930 aa18.36■□□□□ 0.53
LIMS1-211ENST00000462817 DDX52Q9Y2R4 599 aaKnown RBP eCLIP18.36■□□□□ 0.53
LIMS1-211ENST00000462817 MYH4Q9Y623 1939 aa18.36■□□□□ 0.53
LIMS1-211ENST00000462817 BMP3P12645 472 aa18.35■□□□□ 0.53
LIMS1-211ENST00000462817 HAND2P61296 217 aa18.35■□□□□ 0.53
LIMS1-211ENST00000462817 KCTD2Q14681 263 aa18.35■□□□□ 0.53
LIMS1-211ENST00000462817 NECAB2Q7Z6G3 386 aa18.35■□□□□ 0.53
LIMS1-211ENST00000462817 RIOX2Q8IUF8 465 aa18.35■□□□□ 0.53
LIMS1-211ENST00000462817 ANKLE1Q8NAG6 615 aa18.35■□□□□ 0.53
LIMS1-211ENST00000462817 NPLOC4Q8TAT6 608 aa18.35■□□□□ 0.53
LIMS1-211ENST00000462817 CHMP4CQ96CF2 233 aa18.35■□□□□ 0.53
LIMS1-211ENST00000462817 PAWRQ96IZ0 340 aaKnown RBP18.35■□□□□ 0.53
LIMS1-211ENST00000462817 MMP19Q99542 508 aa18.35■□□□□ 0.53
LIMS1-211ENST00000462817 RLFQ13129 1914 aa18.35■□□□□ 0.53
LIMS1-211ENST00000462817 MKI67P46013 3256 aaKnown RBP18.34■□□□□ 0.53
LIMS1-211ENST00000462817 ZMYM6O95789 1325 aa18.34■□□□□ 0.53
LIMS1-211ENST00000462817 ORC4O43929 436 aa18.34■□□□□ 0.53
LIMS1-211ENST00000462817 CCND3P30281 292 aaPredicted RBP18.34■□□□□ 0.53
LIMS1-211ENST00000462817 SLC1A4P43007 532 aa18.34■□□□□ 0.53
LIMS1-211ENST00000462817 MFSD6Q6ZSS7 791 aa18.34■□□□□ 0.53
LIMS1-211ENST00000462817 ABRAQ8N0Z2 381 aa18.34■□□□□ 0.53
LIMS1-211ENST00000462817 CPXCR1Q8N123 301 aa18.34■□□□□ 0.53
LIMS1-211ENST00000462817 TEX13BQ9BXU2 312 aa18.34■□□□□ 0.53
LIMS1-211ENST00000462817 RNF41Q9H4P4 317 aaPredicted RBP18.34■□□□□ 0.53
LIMS1-211ENST00000462817 MTMR7Q9Y216 660 aa18.34■□□□□ 0.53
LIMS1-211ENST00000462817 A0A0G2JMZ2 1700 aa18.34■□□□□ 0.53
LIMS1-211ENST00000462817 TMEM232C9JQI7 657 aa18.33■□□□□ 0.52
LIMS1-211ENST00000462817 ZNF213O14771 459 aa18.33■□□□□ 0.52
LIMS1-211ENST00000462817 CYP2C19P33261 490 aa18.33■□□□□ 0.52
LIMS1-211ENST00000462817 STAT2P52630 851 aa18.33■□□□□ 0.52
LIMS1-211ENST00000462817 SNRNP48Q6IEG0 339 aaKnown RBP18.33■□□□□ 0.52
LIMS1-211ENST00000462817 CHURC1Q8WUH1 139 aa18.33■□□□□ 0.52
LIMS1-211ENST00000462817 FLRT1Q9NZU1 646 aa18.33■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms