RNA–Protein interactions for RNA: ENST00000461819.5

CCDC28B-203, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 5

Gene CCDC28B, Length 780 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-203ENST00000461819 PEX10O60683 326 aa26.85■■□□□ 1.89
CCDC28B-203ENST00000461819 FMNL1O95466 1100 aaPredicted RBP26.85■■□□□ 1.89
CCDC28B-203ENST00000461819 BMP3P12645 472 aa26.85■■□□□ 1.89
CCDC28B-203ENST00000461819 MCCP23508 829 aa26.85■■□□□ 1.89
CCDC28B-203ENST00000461819 DSG3P32926 999 aa26.85■■□□□ 1.89
CCDC28B-203ENST00000461819 SLC1A4P43007 532 aa26.85■■□□□ 1.89
CCDC28B-203ENST00000461819 PSMC4P43686 418 aa26.85■■□□□ 1.89
CCDC28B-203ENST00000461819 FCGRTP55899 365 aa26.85■■□□□ 1.89
CCDC28B-203ENST00000461819 LBX2Q6XYB7 198 aa26.85■■□□□ 1.89
CCDC28B-203ENST00000461819 OTOP1Q7RTM1 612 aa26.85■■□□□ 1.89
CCDC28B-203ENST00000461819 ENAHQ8N8S7 591 aaPredicted RBP26.85■■□□□ 1.89
CCDC28B-203ENST00000461819 GMCL1Q96IK5 515 aa26.85■■□□□ 1.89
CCDC28B-203ENST00000461819 TXNRD2Q9NNW7 524 aa26.85■■□□□ 1.89
CCDC28B-203ENST00000461819 RBPJLQ9UBG7 517 aa26.85■■□□□ 1.89
CCDC28B-203ENST00000461819 RABGAP1Q9Y3P9 1069 aa26.85■■□□□ 1.89
CCDC28B-203ENST00000461819 MYPNQ86TC9 1320 aa26.85■■□□□ 1.89
CCDC28B-203ENST00000461819 ERVK-9P63128 1117 aa26.84■■□□□ 1.89
CCDC28B-203ENST00000461819 ERVK-24P63145 666 aa26.84■■□□□ 1.89
CCDC28B-203ENST00000461819 ATG4CQ96DT6 458 aa26.84■■□□□ 1.89
CCDC28B-203ENST00000461819 KAT14Q9H8E8 782 aa26.84■■□□□ 1.89
CCDC28B-203ENST00000461819 ERICH2A1L162 156 aa26.83■■□□□ 1.89
CCDC28B-203ENST00000461819 ZKSCAN1P17029 563 aaPredicted RBP26.83■■□□□ 1.89
CCDC28B-203ENST00000461819 CAP1Q01518 475 aa26.83■■□□□ 1.89
CCDC28B-203ENST00000461819 IKQ13123 557 aaPredicted RBP26.83■■□□□ 1.89
CCDC28B-203ENST00000461819 SART3Q15020 963 aaKnown RBP26.83■■□□□ 1.89
CCDC28B-203ENST00000461819 CCDC96Q2M329 555 aa26.83■■□□□ 1.89
CCDC28B-203ENST00000461819 DCAF4Q8WV16 495 aa26.83■■□□□ 1.89
CCDC28B-203ENST00000461819 TRIM47Q96LD4 638 aa26.83■■□□□ 1.89
CCDC28B-203ENST00000461819 SLF1Q9BQI6 1058 aa26.83■■□□□ 1.89
CCDC28B-203ENST00000461819 FEM1BQ9UK73 627 aa26.83■■□□□ 1.89
CCDC28B-203ENST00000461819 PPP1R9AQ9ULJ8 1098 aa26.83■■□□□ 1.89
CCDC28B-203ENST00000461819 GTF3C3Q9Y5Q9 886 aa26.83■■□□□ 1.89
CCDC28B-203ENST00000461819 IFIT1BQ5T764 474 aaKnown RBP26.82■■□□□ 1.88
CCDC28B-203ENST00000461819 POTEEQ6S8J3 1075 aa26.82■■□□□ 1.88
CCDC28B-203ENST00000461819 RASGRP2Q7LDG7 609 aa26.82■■□□□ 1.88
CCDC28B-203ENST00000461819 CCAR1Q8IX12 1150 aaKnown RBP26.82■■□□□ 1.88
CCDC28B-203ENST00000461819 MB21D2Q8IYB1 491 aaPredicted RBP26.82■■□□□ 1.88
CCDC28B-203ENST00000461819 TNS4Q8IZW8 715 aa26.82■■□□□ 1.88
CCDC28B-203ENST00000461819 MB21D1Q8N884 522 aa26.82■■□□□ 1.88
CCDC28B-203ENST00000461819 TNPO2O14787 897 aaKnown RBP26.81■■□□□ 1.88
CCDC28B-203ENST00000461819 IFIT3O14879 490 aaKnown RBP26.81■■□□□ 1.88
CCDC28B-203ENST00000461819 CNMDO75829 334 aa26.81■■□□□ 1.88
CCDC28B-203ENST00000461819 GNRH1P01148 92 aa26.81■■□□□ 1.88
CCDC28B-203ENST00000461819 CTGFP29279 349 aa26.81■■□□□ 1.88
CCDC28B-203ENST00000461819 PKN2Q16513 984 aaKnown RBP26.81■■□□□ 1.88
CCDC28B-203ENST00000461819 CHST3Q7LGC8 479 aa26.81■■□□□ 1.88
CCDC28B-203ENST00000461819 PNMA1Q8ND90 353 aa26.81■■□□□ 1.88
CCDC28B-203ENST00000461819 MCOLN1Q9GZU1 580 aa26.81■■□□□ 1.88
CCDC28B-203ENST00000461819 BTBD7Q9P203 1132 aa26.81■■□□□ 1.88
CCDC28B-203ENST00000461819 TMEM232C9JQI7 657 aa26.8■■□□□ 1.88
CCDC28B-203ENST00000461819 STAT2P52630 851 aa26.8■■□□□ 1.88
CCDC28B-203ENST00000461819 CCNA1P78396 465 aa26.8■■□□□ 1.88
CCDC28B-203ENST00000461819 KCTD1Q719H9 257 aa26.8■■□□□ 1.88
CCDC28B-203ENST00000461819 PRPF38AQ8NAV1 312 aaKnown RBP26.8■■□□□ 1.88
CCDC28B-203ENST00000461819 ANKS1AQ92625 1134 aa26.8■■□□□ 1.88
CCDC28B-203ENST00000461819 KIFC2Q96AC6 838 aa26.8■■□□□ 1.88
CCDC28B-203ENST00000461819 CWC22Q9HCG8 908 aaKnown RBP26.8■■□□□ 1.88
CCDC28B-203ENST00000461819 DOCK3Q8IZD9 2030 aa26.8■■□□□ 1.88
CCDC28B-203ENST00000461819 HOXD10P28358 340 aa26.79■■□□□ 1.88
CCDC28B-203ENST00000461819 MCM5P33992 734 aa26.79■■□□□ 1.88
CCDC28B-203ENST00000461819 KRT32Q14532 448 aa26.79■■□□□ 1.88
CCDC28B-203ENST00000461819 PLS1Q14651 629 aa26.79■■□□□ 1.88
CCDC28B-203ENST00000461819 Q3C1V9 767 aa26.79■■□□□ 1.88
CCDC28B-203ENST00000461819 CHURC1Q8WUH1 139 aa26.79■■□□□ 1.88
CCDC28B-203ENST00000461819 CTDP1Q9Y5B0 961 aaPredicted RBP26.79■■□□□ 1.88
CCDC28B-203ENST00000461819 PRC1O43663 620 aa26.78■■□□□ 1.88
CCDC28B-203ENST00000461819 PDHBP11177 359 aa26.78■■□□□ 1.88
CCDC28B-203ENST00000461819 HSPA4P34932 840 aa26.78■■□□□ 1.88
CCDC28B-203ENST00000461819 ANTXR2P58335 489 aa26.78■■□□□ 1.88
CCDC28B-203ENST00000461819 WTAPQ15007 396 aa26.78■■□□□ 1.88
CCDC28B-203ENST00000461819 SEC23AQ15436 765 aa26.78■■□□□ 1.88
CCDC28B-203ENST00000461819 TMEM67Q5HYA8 995 aa26.78■■□□□ 1.88
CCDC28B-203ENST00000461819 FAM160B2Q86V87 743 aa26.78■■□□□ 1.88
CCDC28B-203ENST00000461819 RASEFQ8IZ41 740 aa26.78■■□□□ 1.88
CCDC28B-203ENST00000461819 COA7Q96BR5 231 aa26.78■■□□□ 1.88
CCDC28B-203ENST00000461819 FRMPD2Q68DX3 1309 aaPredicted RBP26.78■■□□□ 1.88
CCDC28B-203ENST00000461819 PLXNB2O15031 1838 aa26.78■■□□□ 1.88
CCDC28B-203ENST00000461819 VWA5AO00534 786 aa26.77■■□□□ 1.88
CCDC28B-203ENST00000461819 EPB41L2O43491 1005 aaKnown RBP26.77■■□□□ 1.88
CCDC28B-203ENST00000461819 MAPK4P31152 587 aa26.77■■□□□ 1.88
CCDC28B-203ENST00000461819 WDR78Q5VTH9 848 aa26.77■■□□□ 1.88
CCDC28B-203ENST00000461819 FBXO46Q6PJ61 603 aaPredicted RBP26.77■■□□□ 1.88
CCDC28B-203ENST00000461819 PORCNQ9H237 461 aa26.77■■□□□ 1.88
CCDC28B-203ENST00000461819 ADAMTS5Q9UNA0 930 aa26.77■■□□□ 1.88
CCDC28B-203ENST00000461819 TSGA10IPQ3SY00 556 aa26.76■■□□□ 1.87
CCDC28B-203ENST00000461819 NEK1Q96PY6 1258 aa26.76■■□□□ 1.87
CCDC28B-203ENST00000461819 SPATC1LQ9H0A9 340 aa26.76■■□□□ 1.87
CCDC28B-203ENST00000461819 GPCPD1Q9NPB8 672 aa26.76■■□□□ 1.87
CCDC28B-203ENST00000461819 SRRDQ9UH36 339 aa26.76■■□□□ 1.87
CCDC28B-203ENST00000461819 PTPN22Q9Y2R2 807 aa26.76■■□□□ 1.87
CCDC28B-203ENST00000461819 EIF5BO60841 1220 aaKnown RBP26.75■■□□□ 1.87
CCDC28B-203ENST00000461819 ZBED4O75132 1171 aa26.75■■□□□ 1.87
CCDC28B-203ENST00000461819 PRMT2P55345 433 aa26.75■■□□□ 1.87
CCDC28B-203ENST00000461819 TMEM132BQ14DG7 1078 aa26.75■■□□□ 1.87
CCDC28B-203ENST00000461819 PLA2G6O60733 806 aa26.74■■□□□ 1.87
CCDC28B-203ENST00000461819 SNHG28P0DPA3 235 aa26.74■■□□□ 1.87
CCDC28B-203ENST00000461819 ZNF543Q08ER8 600 aa26.74■■□□□ 1.87
CCDC28B-203ENST00000461819 TMEM87BQ96K49 555 aa26.74■■□□□ 1.87
CCDC28B-203ENST00000461819 MTA3Q9BTC8 594 aa26.74■■□□□ 1.87
CCDC28B-203ENST00000461819 MOV10L1Q9BXT6 1211 aaKnown RBP26.74■■□□□ 1.87
Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms