RNA–Protein interactions for RNA: ENST00000460235.1

HDAC4-206, Transcript of histone deacetylase 4, humanhuman

TSL 5

Gene HDAC4, Length 343 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-206ENST00000460235 USP17L17D6RBQ6 530 aa14.37□□□□□ -0.11
HDAC4-206ENST00000460235 USP17L19D6RCP7 530 aa14.37□□□□□ -0.11
HDAC4-206ENST00000460235 USP17L20D6RJB6 530 aa14.37□□□□□ -0.11
HDAC4-206ENST00000460235 PLA2G6O60733 806 aa14.37□□□□□ -0.11
HDAC4-206ENST00000460235 NDUFB10O96000 172 aa14.37□□□□□ -0.11
HDAC4-206ENST00000460235 HMGCS2P54868 508 aa14.37□□□□□ -0.11
HDAC4-206ENST00000460235 JAG1P78504 1218 aa14.37□□□□□ -0.11
HDAC4-206ENST00000460235 AKAP17AQ02040 695 aaKnown RBP14.37□□□□□ -0.11
HDAC4-206ENST00000460235 APOBRQ0VD83 1088 aa14.37□□□□□ -0.11
HDAC4-206ENST00000460235 USP17L24Q0WX57 530 aa14.37□□□□□ -0.11
HDAC4-206ENST00000460235 TROAPQ12815 778 aa14.37□□□□□ -0.11
HDAC4-206ENST00000460235 TOB2Q14106 344 aaPredicted RBP14.37□□□□□ -0.11
HDAC4-206ENST00000460235 GADL1Q6ZQY3 521 aa14.37□□□□□ -0.11
HDAC4-206ENST00000460235 MICU3Q86XE3 530 aa14.37□□□□□ -0.11
HDAC4-206ENST00000460235 RASAL3Q86YV0 1011 aa14.37□□□□□ -0.11
HDAC4-206ENST00000460235 SIAH1Q8IUQ4 282 aa14.37□□□□□ -0.11
HDAC4-206ENST00000460235 A0A1W2PRG0 241 aa14.36□□□□□ -0.11
HDAC4-206ENST00000460235 ALDH1A1P00352 501 aa14.36□□□□□ -0.11
HDAC4-206ENST00000460235 HSP90AA1P07900 732 aaKnown RBP14.36□□□□□ -0.11
HDAC4-206ENST00000460235 PDHBP11177 359 aa14.36□□□□□ -0.11
HDAC4-206ENST00000460235 HSPA6P17066 643 aa14.36□□□□□ -0.11
HDAC4-206ENST00000460235 PDIA3P30101 505 aaKnown RBP14.36□□□□□ -0.11
HDAC4-206ENST00000460235 STAT2P52630 851 aa14.36□□□□□ -0.11
HDAC4-206ENST00000460235 C1QTNF8P60827 252 aa14.36□□□□□ -0.11
HDAC4-206ENST00000460235 IRX3P78415 501 aaPredicted RBP14.36□□□□□ -0.11
HDAC4-206ENST00000460235 GRM4Q14833 912 aa14.36□□□□□ -0.11
HDAC4-206ENST00000460235 ZYXQ15942 572 aaKnown RBP14.36□□□□□ -0.11
HDAC4-206ENST00000460235 TRIM22Q8IYM9 498 aa14.36□□□□□ -0.11
HDAC4-206ENST00000460235 TANGO6Q9C0B7 1094 aa14.36□□□□□ -0.11
HDAC4-206ENST00000460235 AGTPBP1Q9UPW5 1226 aa14.36□□□□□ -0.11
HDAC4-206ENST00000460235 MYPNQ86TC9 1320 aa14.36□□□□□ -0.11
HDAC4-206ENST00000460235 GREB1LQ9C091 1923 aaPredicted RBP14.35□□□□□ -0.11
HDAC4-206ENST00000460235 CCL15-CCL14A0A0B4J2E2 113 aa14.35□□□□□ -0.11
HDAC4-206ENST00000460235 PFKFB2O60825 505 aa14.35□□□□□ -0.11
HDAC4-206ENST00000460235 SNHG28P0DPA3 235 aa14.35□□□□□ -0.11
HDAC4-206ENST00000460235 HOXA7P31268 230 aaPredicted RBP14.35□□□□□ -0.11
HDAC4-206ENST00000460235 MAP2K2P36507 400 aa14.35□□□□□ -0.11
HDAC4-206ENST00000460235 ZNF543Q08ER8 600 aa14.35□□□□□ -0.11
HDAC4-206ENST00000460235 COG2Q14746 738 aa14.35□□□□□ -0.11
HDAC4-206ENST00000460235 CCL15Q16663 113 aa14.35□□□□□ -0.11
HDAC4-206ENST00000460235 ANKRD23Q86SG2 305 aa14.35□□□□□ -0.11
HDAC4-206ENST00000460235 CLEC10AQ8IUN9 316 aa14.35□□□□□ -0.11
HDAC4-206ENST00000460235 PRPF38AQ8NAV1 312 aaKnown RBP14.35□□□□□ -0.11
HDAC4-206ENST00000460235 CAPNS2Q96L46 248 aa14.35□□□□□ -0.11
HDAC4-206ENST00000460235 EMILIN3Q9NT22 766 aa14.35□□□□□ -0.11
HDAC4-206ENST00000460235 MTMR7Q9Y216 660 aa14.35□□□□□ -0.11
HDAC4-206ENST00000460235 ZSCAN21Q9Y5A6 473 aaPredicted RBP14.35□□□□□ -0.11
HDAC4-206ENST00000460235 ATAD5Q96QE3 1844 aa14.35□□□□□ -0.11
HDAC4-206ENST00000460235 KLRF2D3W0D1 207 aa14.34□□□□□ -0.11
HDAC4-206ENST00000460235 K7ELQ4 463 aaPredicted RBP14.34□□□□□ -0.11
HDAC4-206ENST00000460235 VCAM1P19320 739 aa14.34□□□□□ -0.11
HDAC4-206ENST00000460235 SHROOM1Q2M3G4 852 aaPredicted RBP14.34□□□□□ -0.11
HDAC4-206ENST00000460235 CCDC84Q86UT8 332 aaPredicted RBP14.34□□□□□ -0.11
HDAC4-206ENST00000460235 SPICE1Q8N0Z3 855 aa14.34□□□□□ -0.11
HDAC4-206ENST00000460235 MB21D1Q8N884 522 aa14.34□□□□□ -0.11
HDAC4-206ENST00000460235 WASF1Q92558 559 aa14.34□□□□□ -0.11
HDAC4-206ENST00000460235 LLPHQ9BRT6 129 aaKnown RBP14.34□□□□□ -0.11
HDAC4-206ENST00000460235 RPAP3Q9H6T3 665 aaPredicted RBP14.34□□□□□ -0.11
HDAC4-206ENST00000460235 SEC63Q9UGP8 760 aaKnown RBP14.34□□□□□ -0.11
HDAC4-206ENST00000460235 BRPF3Q9ULD4 1205 aa14.34□□□□□ -0.11
HDAC4-206ENST00000460235 TPCN1Q9ULQ1 816 aa14.34□□□□□ -0.11
HDAC4-206ENST00000460235 NID2Q14112 1375 aa14.34□□□□□ -0.11
HDAC4-206ENST00000460235 TESPA1A2RU30 521 aaPredicted RBP14.33□□□□□ -0.12
HDAC4-206ENST00000460235 PALM3A6NDB9 673 aaPredicted RBP14.33□□□□□ -0.12
HDAC4-206ENST00000460235 TMEM232C9JQI7 657 aa14.33□□□□□ -0.12
HDAC4-206ENST00000460235 ZBED4O75132 1171 aa14.33□□□□□ -0.12
HDAC4-206ENST00000460235 FLOT1O75955 427 aa14.33□□□□□ -0.12
HDAC4-206ENST00000460235 PDIA4P13667 645 aaKnown RBP14.33□□□□□ -0.12
HDAC4-206ENST00000460235 HMGN5P82970 282 aaKnown RBP14.33□□□□□ -0.12
HDAC4-206ENST00000460235 FAM83BQ5T0W9 1011 aa14.33□□□□□ -0.12
HDAC4-206ENST00000460235 BTNL9Q6UXG8 535 aa14.33□□□□□ -0.12
HDAC4-206ENST00000460235 NOL8Q76FK4 1167 aaKnown RBP14.33□□□□□ -0.12
HDAC4-206ENST00000460235 CNKSR2Q8WXI2 1034 aa14.33□□□□□ -0.12
HDAC4-206ENST00000460235 RRP36Q96EU6 259 aaKnown RBP14.33□□□□□ -0.12
HDAC4-206ENST00000460235 PARK7Q99497 189 aaKnown RBP14.33□□□□□ -0.12
HDAC4-206ENST00000460235 SLF1Q9BQI6 1058 aa14.33□□□□□ -0.12
HDAC4-206ENST00000460235 GPHNQ9NQX3 736 aaPredicted RBP14.33□□□□□ -0.12
HDAC4-206ENST00000460235 XBP1P17861 261 aa14.32□□□□□ -0.12
HDAC4-206ENST00000460235 GCLCP48506 637 aaPredicted RBP14.32□□□□□ -0.12
HDAC4-206ENST00000460235 SSRP1Q08945 709 aaKnown RBP14.32□□□□□ -0.12
HDAC4-206ENST00000460235 GRM1Q13255 1194 aa14.32□□□□□ -0.12
HDAC4-206ENST00000460235 CATSPERGQ6ZRH7 1159 aa14.32□□□□□ -0.12
HDAC4-206ENST00000460235 NKX2-3Q8TAU0 364 aa14.32□□□□□ -0.12
HDAC4-206ENST00000460235 GTF3C6Q969F1 213 aa14.32□□□□□ -0.12
HDAC4-206ENST00000460235 TMX3Q96JJ7 454 aa14.32□□□□□ -0.12
HDAC4-206ENST00000460235 MS4A4AQ96JQ5 239 aa14.32□□□□□ -0.12
HDAC4-206ENST00000460235 SPZ1Q9BXG8 430 aa14.32□□□□□ -0.12
HDAC4-206ENST00000460235 GPCPD1Q9NPB8 672 aa14.32□□□□□ -0.12
HDAC4-206ENST00000460235 FRMD4AQ9P2Q2 1039 aaPredicted RBP14.32□□□□□ -0.12
HDAC4-206ENST00000460235 MYH4Q9Y623 1939 aa14.32□□□□□ -0.12
HDAC4-206ENST00000460235 OTOFQ9HC10 1997 aa14.31□□□□□ -0.12
HDAC4-206ENST00000460235 hCG_1984214I3L0E3 225 aa14.31□□□□□ -0.12
HDAC4-206ENST00000460235 IFNAR1P17181 557 aa14.31□□□□□ -0.12
HDAC4-206ENST00000460235 COPB2P35606 906 aa14.31□□□□□ -0.12
HDAC4-206ENST00000460235 GJA5P36382 358 aa14.31□□□□□ -0.12
HDAC4-206ENST00000460235 TM4SF4P48230 202 aa14.31□□□□□ -0.12
HDAC4-206ENST00000460235 CCT2P78371 535 aaKnown RBP14.31□□□□□ -0.12
HDAC4-206ENST00000460235 MKRN3Q13064 507 aaKnown RBP14.31□□□□□ -0.12
HDAC4-206ENST00000460235 STK3Q13188 491 aa14.31□□□□□ -0.12
HDAC4-206ENST00000460235 ME3Q16798 604 aa14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms