RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 MAPRE1Q15691 268 aaKnown RBP5.58□□□□□ -1.52
CCDC88A-209ENST00000456975 DDB1Q16531 1140 aa5.58□□□□□ -1.52
CCDC88A-209ENST00000456975 CTC1Q2NKJ3 1217 aa5.58□□□□□ -1.52
CCDC88A-209ENST00000456975 TMEM214Q6NUQ4 689 aaKnown RBP5.58□□□□□ -1.52
CCDC88A-209ENST00000456975 MIGA1Q8NAN2 632 aa5.58□□□□□ -1.52
CCDC88A-209ENST00000456975 GLIS3Q8NEA6 775 aa5.58□□□□□ -1.52
CCDC88A-209ENST00000456975 RHPN1Q8TCX5 695 aa5.58□□□□□ -1.52
CCDC88A-209ENST00000456975 FRS2Q8WU20 508 aa5.58□□□□□ -1.52
CCDC88A-209ENST00000456975 APPBP2Q92624 585 aa5.58□□□□□ -1.52
CCDC88A-209ENST00000456975 CENPTQ96BT3 561 aa5.58□□□□□ -1.52
CCDC88A-209ENST00000456975 RUNDC1Q96C34 613 aa5.58□□□□□ -1.52
CCDC88A-209ENST00000456975 CDHR1Q96JP9 859 aa5.58□□□□□ -1.52
CCDC88A-209ENST00000456975 SUSD3Q96L08 255 aa5.58□□□□□ -1.52
CCDC88A-209ENST00000456975 ZSCAN10Q96SZ4 725 aaPredicted RBP5.58□□□□□ -1.52
CCDC88A-209ENST00000456975 RSRP1Q9BUV0 290 aa5.58□□□□□ -1.52
CCDC88A-209ENST00000456975 NOC4LQ9BVI4 516 aaKnown RBP5.58□□□□□ -1.52
CCDC88A-209ENST00000456975 NIFKQ9BYG3 293 aaKnown RBP5.58□□□□□ -1.52
CCDC88A-209ENST00000456975 DHX36Q9H2U1 1008 aaKnown RBP5.58□□□□□ -1.52
CCDC88A-209ENST00000456975 ETAA1Q9NY74 926 aa5.58□□□□□ -1.52
CCDC88A-209ENST00000456975 CALCOCO1Q9P1Z2 691 aa5.58□□□□□ -1.52
CCDC88A-209ENST00000456975 MAFFQ9ULX9 164 aa5.58□□□□□ -1.52
CCDC88A-209ENST00000456975 PTPRUQ92729 1446 aa5.57□□□□□ -1.52
CCDC88A-209ENST00000456975 POTEMA6NI47 508 aa5.57□□□□□ -1.52
CCDC88A-209ENST00000456975 RNF223E7ERA6 249 aa5.57□□□□□ -1.52
CCDC88A-209ENST00000456975 RNASEH2AO75792 299 aaKnown RBP5.57□□□□□ -1.52
CCDC88A-209ENST00000456975 BBOX1O75936 387 aa5.57□□□□□ -1.52
CCDC88A-209ENST00000456975 PDGFRBP09619 1106 aa5.57□□□□□ -1.52
CCDC88A-209ENST00000456975 SMARCA1P28370 1054 aa5.57□□□□□ -1.52
CCDC88A-209ENST00000456975 PIK3CAP42336 1068 aa5.57□□□□□ -1.52
CCDC88A-209ENST00000456975 RELBQ01201 579 aa5.57□□□□□ -1.52
CCDC88A-209ENST00000456975 DCTN1Q14203 1278 aa5.57□□□□□ -1.52
CCDC88A-209ENST00000456975 PPP2R5BQ15173 497 aa5.57□□□□□ -1.52
CCDC88A-209ENST00000456975 TRIML1Q8N9V2 468 aa5.57□□□□□ -1.52
CCDC88A-209ENST00000456975 GOLM1Q8NBJ4 401 aa5.57□□□□□ -1.52
CCDC88A-209ENST00000456975 SLC39A13Q96H72 371 aa5.57□□□□□ -1.52
CCDC88A-209ENST00000456975 SHDQ96IW2 340 aa5.57□□□□□ -1.52
CCDC88A-209ENST00000456975 CEP89Q96ST8 783 aa5.57□□□□□ -1.52
CCDC88A-209ENST00000456975 SLKQ9H2G2 1235 aaPredicted RBP5.57□□□□□ -1.52
CCDC88A-209ENST00000456975 AS3MTQ9HBK9 375 aa5.57□□□□□ -1.52
CCDC88A-209ENST00000456975 TRMT1Q9NXH9 659 aaKnown RBP5.57□□□□□ -1.52
CCDC88A-209ENST00000456975 PRKAG3Q9UGI9 489 aa5.57□□□□□ -1.52
CCDC88A-209ENST00000456975 ZNF652Q9Y2D9 606 aa5.57□□□□□ -1.52
CCDC88A-209ENST00000456975 TNS1Q9HBL0 1735 aaKnown RBP5.57□□□□□ -1.52
CCDC88A-209ENST00000456975 KIF1BO60333 1816 aa5.57□□□□□ -1.52
CCDC88A-209ENST00000456975 ADGRL3Q9HAR2 1447 aa5.57□□□□□ -1.52
CCDC88A-209ENST00000456975 TGFBR3LH3BV60 316 aa5.56□□□□□ -1.52
CCDC88A-209ENST00000456975 ADH1AP07327 375 aa5.56□□□□□ -1.52
CCDC88A-209ENST00000456975 MYBL2P10244 700 aa5.56□□□□□ -1.52
CCDC88A-209ENST00000456975 COL6A1P12109 1028 aa5.56□□□□□ -1.52
CCDC88A-209ENST00000456975 GRNP28799 593 aaKnown RBP5.56□□□□□ -1.52
CCDC88A-209ENST00000456975 GSTT1P30711 240 aa5.56□□□□□ -1.52
CCDC88A-209ENST00000456975 HOXA10P31260 410 aaPredicted RBP5.56□□□□□ -1.52
CCDC88A-209ENST00000456975 PHKA2P46019 1235 aa5.56□□□□□ -1.52
CCDC88A-209ENST00000456975 TMED1Q13445 227 aa5.56□□□□□ -1.52
CCDC88A-209ENST00000456975 TRIM29Q14134 588 aa5.56□□□□□ -1.52
CCDC88A-209ENST00000456975 SAFB2Q14151 953 aaKnown RBP eCLIP5.56□□□□□ -1.52
CCDC88A-209ENST00000456975 INF2Q27J81 1249 aa5.56□□□□□ -1.52
CCDC88A-209ENST00000456975 CCDC178Q5BJE1 867 aa5.56□□□□□ -1.52
CCDC88A-209ENST00000456975 ODR4Q5SWX8 454 aa5.56□□□□□ -1.52
CCDC88A-209ENST00000456975 IQCEQ6IPM2 695 aa5.56□□□□□ -1.52
CCDC88A-209ENST00000456975 SUGP1Q8IWZ8 645 aaKnown RBP5.56□□□□□ -1.52
CCDC88A-209ENST00000456975 SAMD14Q8IZD0 417 aaPredicted RBP5.56□□□□□ -1.52
CCDC88A-209ENST00000456975 ATRIPQ8WXE1 791 aa5.56□□□□□ -1.52
CCDC88A-209ENST00000456975 PLD4Q96BZ4 506 aa5.56□□□□□ -1.52
CCDC88A-209ENST00000456975 YIPF2Q9BWQ6 316 aa5.56□□□□□ -1.52
CCDC88A-209ENST00000456975 SRCIN1Q9C0H9 1055 aa5.56□□□□□ -1.52
CCDC88A-209ENST00000456975 VEZTQ9HBM0 779 aa5.56□□□□□ -1.52
CCDC88A-209ENST00000456975 KANSL3Q9P2N6 904 aa5.56□□□□□ -1.52
CCDC88A-209ENST00000456975 RALGAPBQ86X10 1494 aa5.56□□□□□ -1.52
CCDC88A-209ENST00000456975 CAMTA1Q9Y6Y1 1673 aa5.56□□□□□ -1.52
CCDC88A-209ENST00000456975 PF4P02776 101 aa5.56□□□□□ -1.52
CCDC88A-209ENST00000456975 MASP1P48740 699 aa5.56□□□□□ -1.52
CCDC88A-209ENST00000456975 APOBRQ0VD83 1088 aa5.56□□□□□ -1.52
CCDC88A-209ENST00000456975 TRAF1Q13077 416 aa5.56□□□□□ -1.52
CCDC88A-209ENST00000456975 PREPLQ4J6C6 727 aaPredicted RBP5.56□□□□□ -1.52
CCDC88A-209ENST00000456975 C10orf62Q5T681 223 aaPredicted RBP5.56□□□□□ -1.52
CCDC88A-209ENST00000456975 PCNX4Q63HM2 1172 aa5.56□□□□□ -1.52
CCDC88A-209ENST00000456975 PDXDC1Q6P996 788 aa5.56□□□□□ -1.52
CCDC88A-209ENST00000456975 TPTE2Q6XPS3 522 aa5.56□□□□□ -1.52
CCDC88A-209ENST00000456975 NCAPG2Q86XI2 1143 aa5.56□□□□□ -1.52
CCDC88A-209ENST00000456975 JAMLQ86YT9 394 aa5.56□□□□□ -1.52
CCDC88A-209ENST00000456975 MYOCDQ8IZQ8 938 aa5.56□□□□□ -1.52
CCDC88A-209ENST00000456975 RSPH14Q9UHP6 348 aa5.56□□□□□ -1.52
CCDC88A-209ENST00000456975 LZTS1Q9Y250 596 aa5.56□□□□□ -1.52
CCDC88A-209ENST00000456975 IKBKGQ9Y6K9 419 aa5.56□□□□□ -1.52
CCDC88A-209ENST00000456975 NWD2Q9ULI1 1742 aa5.56□□□□□ -1.52
CCDC88A-209ENST00000456975 TLR3O15455 904 aaKnown RBP5.55□□□□□ -1.52
CCDC88A-209ENST00000456975 SIAH2O43255 324 aa5.55□□□□□ -1.52
CCDC88A-209ENST00000456975 CYP2E1P05181 493 aaPredicted RBP5.55□□□□□ -1.52
CCDC88A-209ENST00000456975 RPLP1P05386 114 aaKnown RBP5.55□□□□□ -1.52
CCDC88A-209ENST00000456975 MMEP08473 750 aa5.55□□□□□ -1.52
CCDC88A-209ENST00000456975 CELA3AP09093 270 aa5.55□□□□□ -1.52
CCDC88A-209ENST00000456975 INPP5BP32019 993 aa5.55□□□□□ -1.52
CCDC88A-209ENST00000456975 TSPAN7P41732 249 aa5.55□□□□□ -1.52
CCDC88A-209ENST00000456975 MYOM2P54296 1465 aa5.55□□□□□ -1.52
CCDC88A-209ENST00000456975 SESN3P58005 492 aa5.55□□□□□ -1.52
CCDC88A-209ENST00000456975 CHAF1AQ13111 956 aaPredicted RBP5.55□□□□□ -1.52
CCDC88A-209ENST00000456975 ANKRD45Q5TZF3 282 aa5.55□□□□□ -1.52
CCDC88A-209ENST00000456975 AGAP9Q5VTM2 703 aa5.55□□□□□ -1.52
CCDC88A-209ENST00000456975 FBXW10Q5XX13 1052 aa5.55□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms