RNA–Protein interactions for RNA: ENST00000447216.2

TRAPPC4-203, Transcript of trafficking protein particle complex 4, humanhuman

TSL 2

Gene TRAPPC4, Length 980 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC4-203ENST00000447216 VCAM1P19320 739 aa21■□□□□ 0.95
TRAPPC4-203ENST00000447216 SLC1A4P43007 532 aa21■□□□□ 0.95
TRAPPC4-203ENST00000447216 GTF2A2P52657 109 aa21■□□□□ 0.95
TRAPPC4-203ENST00000447216 CCT2P78371 535 aaKnown RBP21■□□□□ 0.95
TRAPPC4-203ENST00000447216 GRM4Q14833 912 aa21■□□□□ 0.95
TRAPPC4-203ENST00000447216 CCL15Q16663 113 aa21■□□□□ 0.95
TRAPPC4-203ENST00000447216 ME3Q16798 604 aa21■□□□□ 0.95
TRAPPC4-203ENST00000447216 TREML2Q5T2D2 321 aa21■□□□□ 0.95
TRAPPC4-203ENST00000447216 ZNF274Q96GC6 653 aaPredicted RBP21■□□□□ 0.95
TRAPPC4-203ENST00000447216 GMCL1Q96IK5 515 aa21■□□□□ 0.95
TRAPPC4-203ENST00000447216 CAPNS2Q96L46 248 aa21■□□□□ 0.95
TRAPPC4-203ENST00000447216 ZIC5Q96T25 663 aa21■□□□□ 0.95
TRAPPC4-203ENST00000447216 NCOA5Q9HCD5 579 aaKnown RBP21■□□□□ 0.95
TRAPPC4-203ENST00000447216 BMP3P12645 472 aa20.99■□□□□ 0.95
TRAPPC4-203ENST00000447216 METAP2P50579 478 aaKnown RBP eCLIP20.99■□□□□ 0.95
TRAPPC4-203ENST00000447216 ZNF543Q08ER8 600 aa20.99■□□□□ 0.95
TRAPPC4-203ENST00000447216 TTBK2Q6IQ55 1244 aa20.99■□□□□ 0.95
TRAPPC4-203ENST00000447216 STAG2Q8N3U4 1231 aa20.99■□□□□ 0.95
TRAPPC4-203ENST00000447216 NECAB1Q8N987 351 aa20.99■□□□□ 0.95
TRAPPC4-203ENST00000447216 BRI3BPQ8WY22 251 aa20.99■□□□□ 0.95
TRAPPC4-203ENST00000447216 LPAR1Q92633 364 aa20.99■□□□□ 0.95
TRAPPC4-203ENST00000447216 RPAP3Q9H6T3 665 aaPredicted RBP20.99■□□□□ 0.95
TRAPPC4-203ENST00000447216 COL11A1P12107 1806 aaPredicted RBP20.99■□□□□ 0.95
TRAPPC4-203ENST00000447216 WDR46O15213 610 aaKnown RBP20.98■□□□□ 0.95
TRAPPC4-203ENST00000447216 AOC2O75106 756 aa20.98■□□□□ 0.95
TRAPPC4-203ENST00000447216 PARP1P09874 1014 aaKnown RBP20.98■□□□□ 0.95
TRAPPC4-203ENST00000447216 CALM1P0DP23 149 aa20.98■□□□□ 0.95
TRAPPC4-203ENST00000447216 CALM2P0DP24 149 aa20.98■□□□□ 0.95
TRAPPC4-203ENST00000447216 CALM3P0DP25 149 aa20.98■□□□□ 0.95
TRAPPC4-203ENST00000447216 CETPP11597 493 aa20.98■□□□□ 0.95
TRAPPC4-203ENST00000447216 CDC27P30260 824 aa20.98■□□□□ 0.95
TRAPPC4-203ENST00000447216 RTN1Q16799 776 aa20.98■□□□□ 0.95
TRAPPC4-203ENST00000447216 FANCBQ8NB91 859 aa20.98■□□□□ 0.95
TRAPPC4-203ENST00000447216 CTCFLQ8NI51 663 aaPredicted RBP20.98■□□□□ 0.95
TRAPPC4-203ENST00000447216 CPVLQ9H3G5 476 aa20.98■□□□□ 0.95
TRAPPC4-203ENST00000447216 FAM217BQ9NTX9 383 aaPredicted RBP20.98■□□□□ 0.95
TRAPPC4-203ENST00000447216 MAD2L2Q9UI95 211 aa20.98■□□□□ 0.95
TRAPPC4-203ENST00000447216 PFKFB2O60825 505 aa20.97■□□□□ 0.95
TRAPPC4-203ENST00000447216 HSPA6P17066 643 aa20.97■□□□□ 0.95
TRAPPC4-203ENST00000447216 ASPRV1Q53RT3 343 aa20.97■□□□□ 0.95
TRAPPC4-203ENST00000447216 GPAT2Q6NUI2 795 aa20.97■□□□□ 0.95
TRAPPC4-203ENST00000447216 SAMD1Q6SPF0 538 aaPredicted RBP20.97■□□□□ 0.95
TRAPPC4-203ENST00000447216 FASTKD5Q7L8L6 764 aaKnown RBP20.97■□□□□ 0.95
TRAPPC4-203ENST00000447216 PROCA1Q8NCQ7 364 aaPredicted RBP20.97■□□□□ 0.95
TRAPPC4-203ENST00000447216 IL27Q8NEV9 243 aa20.97■□□□□ 0.95
TRAPPC4-203ENST00000447216 TANGO6Q9C0B7 1094 aa20.97■□□□□ 0.95
TRAPPC4-203ENST00000447216 SLKQ9H2G2 1235 aaPredicted RBP20.97■□□□□ 0.95
TRAPPC4-203ENST00000447216 FBXO28Q9NVF7 368 aa20.97■□□□□ 0.95
TRAPPC4-203ENST00000447216 PALM3A6NDB9 673 aaPredicted RBP20.96■□□□□ 0.95
TRAPPC4-203ENST00000447216 MANSC4A6NHS7 340 aaPredicted RBP20.96■□□□□ 0.95
TRAPPC4-203ENST00000447216 TMEM232C9JQI7 657 aa20.96■□□□□ 0.95
TRAPPC4-203ENST00000447216 DTNBO60941 627 aa20.96■□□□□ 0.95
TRAPPC4-203ENST00000447216 PLEKHA8P1O95397 391 aa20.96■□□□□ 0.95
TRAPPC4-203ENST00000447216 ADD1P35611 737 aaKnown RBP20.96■□□□□ 0.95
TRAPPC4-203ENST00000447216 SLC16A2P36021 539 aa20.96■□□□□ 0.95
TRAPPC4-203ENST00000447216 MCM2P49736 904 aa20.96■□□□□ 0.95
TRAPPC4-203ENST00000447216 ST3GAL1Q11201 340 aa20.96■□□□□ 0.95
TRAPPC4-203ENST00000447216 SCRN1Q12765 414 aa20.96■□□□□ 0.95
TRAPPC4-203ENST00000447216 CMTR1Q8N1G2 835 aaKnown RBP20.96■□□□□ 0.95
TRAPPC4-203ENST00000447216 SNX21Q969T3 373 aa20.96■□□□□ 0.95
TRAPPC4-203ENST00000447216 TMX3Q96JJ7 454 aa20.96■□□□□ 0.95
TRAPPC4-203ENST00000447216 ZSCAN31Q96LW9 406 aaPredicted RBP20.96■□□□□ 0.95
TRAPPC4-203ENST00000447216 MAP3K14Q99558 947 aa20.96■□□□□ 0.95
TRAPPC4-203ENST00000447216 UBA5Q9GZZ9 404 aa20.96■□□□□ 0.95
TRAPPC4-203ENST00000447216 NID2Q14112 1375 aa20.96■□□□□ 0.95
TRAPPC4-203ENST00000447216 SMCHD1A6NHR9 2005 aa20.95■□□□□ 0.94
TRAPPC4-203ENST00000447216 BTBD19C9JJ37 291 aa20.95■□□□□ 0.94
TRAPPC4-203ENST00000447216 KLRF2D3W0D1 207 aa20.95■□□□□ 0.94
TRAPPC4-203ENST00000447216 KIF5BP33176 963 aa20.95■□□□□ 0.94
TRAPPC4-203ENST00000447216 VEGFBP49765 207 aa20.95■□□□□ 0.94
TRAPPC4-203ENST00000447216 RCAN1P53805 252 aa20.95■□□□□ 0.94
TRAPPC4-203ENST00000447216 KIF23Q02241 960 aaPredicted RBP20.95■□□□□ 0.94
TRAPPC4-203ENST00000447216 IKQ13123 557 aaPredicted RBP20.95■□□□□ 0.94
TRAPPC4-203ENST00000447216 CCDC83Q8IWF9 413 aa20.95■□□□□ 0.94
TRAPPC4-203ENST00000447216 PTPN18Q99952 460 aa20.95■□□□□ 0.94
TRAPPC4-203ENST00000447216 AGTPBP1Q9UPW5 1226 aa20.95■□□□□ 0.94
TRAPPC4-203ENST00000447216 USP17L15C9J2P7 530 aa20.94■□□□□ 0.94
TRAPPC4-203ENST00000447216 USP17L13C9JLJ4 530 aa20.94■□□□□ 0.94
TRAPPC4-203ENST00000447216 USP17L11C9JVI0 530 aa20.94■□□□□ 0.94
TRAPPC4-203ENST00000447216 USP17L18D6R9N7 530 aa20.94■□□□□ 0.94
TRAPPC4-203ENST00000447216 USP17L22D6RA61 530 aa20.94■□□□□ 0.94
TRAPPC4-203ENST00000447216 USP17L17D6RBQ6 530 aa20.94■□□□□ 0.94
TRAPPC4-203ENST00000447216 USP17L19D6RCP7 530 aa20.94■□□□□ 0.94
TRAPPC4-203ENST00000447216 USP17L20D6RJB6 530 aa20.94■□□□□ 0.94
TRAPPC4-203ENST00000447216 USP17L24Q0WX57 530 aa20.94■□□□□ 0.94
TRAPPC4-203ENST00000447216 SLC35G1Q2M3R5 365 aa20.94■□□□□ 0.94
TRAPPC4-203ENST00000447216 GPATCH4Q5T3I0 446 aaKnown RBP20.94■□□□□ 0.94
TRAPPC4-203ENST00000447216 CATSPERGQ6ZRH7 1159 aa20.94■□□□□ 0.94
TRAPPC4-203ENST00000447216 NBPF11Q86T75 865 aa20.94■□□□□ 0.94
TRAPPC4-203ENST00000447216 HSCBQ8IWL3 235 aa20.94■□□□□ 0.94
TRAPPC4-203ENST00000447216 CCDC82Q8N4S0 544 aa20.94■□□□□ 0.94
TRAPPC4-203ENST00000447216 GTF3C6Q969F1 213 aa20.94■□□□□ 0.94
TRAPPC4-203ENST00000447216 SH2B1Q9NRF2 756 aaPredicted RBP20.94■□□□□ 0.94
TRAPPC4-203ENST00000447216 RBM19Q9Y4C8 960 aaKnown RBP20.94■□□□□ 0.94
TRAPPC4-203ENST00000447216 WDR33Q9C0J8 1336 aaKnown RBP20.94■□□□□ 0.94
TRAPPC4-203ENST00000447216 TESPA1A2RU30 521 aaPredicted RBP20.93■□□□□ 0.94
TRAPPC4-203ENST00000447216 PPFIA3O75145 1194 aa20.93■□□□□ 0.94
TRAPPC4-203ENST00000447216 FLOT1O75955 427 aa20.93■□□□□ 0.94
TRAPPC4-203ENST00000447216 NOGQ13253 232 aa20.93■□□□□ 0.94
TRAPPC4-203ENST00000447216 TMTC3Q6ZXV5 915 aa20.93■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 63.1 ms