RNA–Protein interactions for RNA: ENST00000444458.5

CCDC88A-208, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 4,236 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-208ENST00000444458 LTFP02788 710 aa2.79□□□□□ -1.96
CCDC88A-208ENST00000444458 MYBP10242 640 aa2.79□□□□□ -1.96
CCDC88A-208ENST00000444458 CHKAP35790 457 aa2.79□□□□□ -1.96
CCDC88A-208ENST00000444458 PTGIRP43119 386 aa2.79□□□□□ -1.96
CCDC88A-208ENST00000444458 GJA9P57773 515 aa2.79□□□□□ -1.96
CCDC88A-208ENST00000444458 PPP2R2AP63151 447 aa2.79□□□□□ -1.96
CCDC88A-208ENST00000444458 TBX2Q13207 712 aaPredicted RBP2.79□□□□□ -1.96
CCDC88A-208ENST00000444458 ATP13A4Q4VNC1 1196 aa2.79□□□□□ -1.96
CCDC88A-208ENST00000444458 C4orf17Q53FE4 359 aa2.79□□□□□ -1.96
CCDC88A-208ENST00000444458 RRP12Q5JTH9 1297 aaKnown RBP2.79□□□□□ -1.96
CCDC88A-208ENST00000444458 HEATR6Q6AI08 1181 aaKnown RBP2.79□□□□□ -1.96
CCDC88A-208ENST00000444458 FAAH2Q6GMR7 532 aa2.79□□□□□ -1.96
CCDC88A-208ENST00000444458 SLFN12Q8IYM2 578 aa2.79□□□□□ -1.96
CCDC88A-208ENST00000444458 SDR16C5Q8N3Y7 309 aa2.79□□□□□ -1.96
CCDC88A-208ENST00000444458 TCF12Q99081 682 aa2.79□□□□□ -1.96
CCDC88A-208ENST00000444458 C1orf112Q9NSG2 853 aa2.79□□□□□ -1.96
CCDC88A-208ENST00000444458 INVSQ9Y283 1065 aa2.79□□□□□ -1.96
CCDC88A-208ENST00000444458 AP1G1O43747 822 aa2.78□□□□□ -1.96
CCDC88A-208ENST00000444458 HTR3BO95264 441 aa2.78□□□□□ -1.96
CCDC88A-208ENST00000444458 ADH1CP00326 375 aa2.78□□□□□ -1.96
CCDC88A-208ENST00000444458 CFBP00751 764 aa2.78□□□□□ -1.96
CCDC88A-208ENST00000444458 KCNJ6P48051 423 aa2.78□□□□□ -1.96
CCDC88A-208ENST00000444458 ELF2Q15723 593 aa2.78□□□□□ -1.96
CCDC88A-208ENST00000444458 CCDC92Q53HC0 331 aaPredicted RBP2.78□□□□□ -1.96
CCDC88A-208ENST00000444458 FAM133BQ5BKY9 247 aaKnown RBP2.78□□□□□ -1.96
CCDC88A-208ENST00000444458 DDX53Q86TM3 631 aaKnown RBP2.78□□□□□ -1.96
CCDC88A-208ENST00000444458 GRIN3AQ8TCU5 1115 aa2.78□□□□□ -1.96
CCDC88A-208ENST00000444458 KISS1RQ969F8 398 aaPredicted RBP2.78□□□□□ -1.96
CCDC88A-208ENST00000444458 MTRQ99707 1265 aa2.78□□□□□ -1.96
CCDC88A-208ENST00000444458 EHMT1Q9H9B1 1298 aa2.78□□□□□ -1.96
CCDC88A-208ENST00000444458 BRD7Q9NPI1 651 aa2.78□□□□□ -1.96
CCDC88A-208ENST00000444458 PICK1Q9NRD5 415 aa2.78□□□□□ -1.96
CCDC88A-208ENST00000444458 GPC6Q9Y625 555 aaPredicted RBP2.78□□□□□ -1.96
CCDC88A-208ENST00000444458 RPGRIP1LQ68CZ1 1315 aa2.78□□□□□ -1.96
CCDC88A-208ENST00000444458 ABHD14A-ACY1A0A1B0GW23 586 aa2.78□□□□□ -1.96
CCDC88A-208ENST00000444458 M0R2C6 588 aa2.78□□□□□ -1.96
CCDC88A-208ENST00000444458 PRKD3O94806 890 aa2.78□□□□□ -1.96
CCDC88A-208ENST00000444458 GBX1Q14549 363 aa2.78□□□□□ -1.96
CCDC88A-208ENST00000444458 ZYXQ15942 572 aaKnown RBP2.78□□□□□ -1.96
CCDC88A-208ENST00000444458 SEPT7Q16181 437 aaKnown RBP2.78□□□□□ -1.96
CCDC88A-208ENST00000444458 CDCA2Q69YH5 1023 aaPredicted RBP2.78□□□□□ -1.96
CCDC88A-208ENST00000444458 CPA6Q8N4T0 437 aa2.78□□□□□ -1.96
CCDC88A-208ENST00000444458 DDX54Q8TDD1 881 aaKnown RBP2.78□□□□□ -1.96
CCDC88A-208ENST00000444458 RPGRQ92834 1020 aaKnown RBP2.78□□□□□ -1.96
CCDC88A-208ENST00000444458 ATP6V1E2Q96A05 226 aa2.78□□□□□ -1.96
CCDC88A-208ENST00000444458 KLHL11Q9NVR0 708 aa2.78□□□□□ -1.96
CCDC88A-208ENST00000444458 CLIC5Q9NZA1 410 aa2.78□□□□□ -1.96
CCDC88A-208ENST00000444458 A0A1W2PQU0 124 aa2.78□□□□□ -1.96
CCDC88A-208ENST00000444458 PRSS47A8MTI9 375 aa2.78□□□□□ -1.96
CCDC88A-208ENST00000444458 UPK3BL1B0FP48 263 aa2.78□□□□□ -1.96
CCDC88A-208ENST00000444458 UPK3BL2E5RIL1 263 aa2.78□□□□□ -1.96
CCDC88A-208ENST00000444458 DHX16O60231 1041 aaKnown RBP2.78□□□□□ -1.96
CCDC88A-208ENST00000444458 MMP20O60882 483 aa2.78□□□□□ -1.96
CCDC88A-208ENST00000444458 MBD4O95243 580 aa2.78□□□□□ -1.96
CCDC88A-208ENST00000444458 RBP3P10745 1247 aa2.78□□□□□ -1.96
CCDC88A-208ENST00000444458 PABPC1P11940 636 aaKnown RBP2.78□□□□□ -1.96
CCDC88A-208ENST00000444458 SLC5A1P13866 664 aa2.78□□□□□ -1.96
CCDC88A-208ENST00000444458 NME2P22392 152 aa2.78□□□□□ -1.96
CCDC88A-208ENST00000444458 LORP23490 312 aaPredicted RBP2.78□□□□□ -1.96
CCDC88A-208ENST00000444458 GRM5P41594 1212 aa2.78□□□□□ -1.96
CCDC88A-208ENST00000444458 VEGFBP49765 207 aa2.78□□□□□ -1.96
CCDC88A-208ENST00000444458 GABREP78334 506 aa2.78□□□□□ -1.96
CCDC88A-208ENST00000444458 OCRLQ01968 901 aa2.78□□□□□ -1.96
CCDC88A-208ENST00000444458 MLLT1Q03111 559 aaPredicted RBP2.78□□□□□ -1.96
CCDC88A-208ENST00000444458 IFIT5Q13325 482 aaKnown RBP2.78□□□□□ -1.96
CCDC88A-208ENST00000444458 TAF12Q16514 161 aa2.78□□□□□ -1.96
CCDC88A-208ENST00000444458 OVOS1Q6IE37 1185 aa2.78□□□□□ -1.96
CCDC88A-208ENST00000444458 NLRC3Q7RTR2 1065 aa2.78□□□□□ -1.96
CCDC88A-208ENST00000444458 RASSF3Q86WH2 238 aa2.78□□□□□ -1.96
CCDC88A-208ENST00000444458 TRMT2BQ96GJ1 504 aaKnown RBP2.78□□□□□ -1.96
CCDC88A-208ENST00000444458 DDX24Q9GZR7 859 aaKnown RBP eCLIP2.78□□□□□ -1.96
CCDC88A-208ENST00000444458 CABP5Q9NP86 173 aa2.78□□□□□ -1.96
CCDC88A-208ENST00000444458 ARHGEF4Q9NR80 690 aa2.78□□□□□ -1.96
CCDC88A-208ENST00000444458 RRN3Q9NYV6 651 aa2.78□□□□□ -1.96
CCDC88A-208ENST00000444458 SALL4Q9UJQ4 1053 aa2.78□□□□□ -1.96
CCDC88A-208ENST00000444458 PKD1L2Q7Z442 2459 aa2.77□□□□□ -1.97
CCDC88A-208ENST00000444458 BICDL2A1A5D9 508 aa2.77□□□□□ -1.97
CCDC88A-208ENST00000444458 hCG_1984214I3L0E3 225 aa2.77□□□□□ -1.97
CCDC88A-208ENST00000444458 RHOBTB3O94955 611 aa2.77□□□□□ -1.97
CCDC88A-208ENST00000444458 ACPPP15309 386 aa2.77□□□□□ -1.97
CCDC88A-208ENST00000444458 TARSP26639 723 aaKnown RBP2.77□□□□□ -1.97
CCDC88A-208ENST00000444458 ZNF280AP59817 542 aaPredicted RBP2.77□□□□□ -1.97
CCDC88A-208ENST00000444458 HNRNPUQ00839 825 aaKnown RBP eCLIP2.77□□□□□ -1.97
CCDC88A-208ENST00000444458 PDE4BQ07343 736 aa2.77□□□□□ -1.97
CCDC88A-208ENST00000444458 FAPQ12884 760 aa2.77□□□□□ -1.97
CCDC88A-208ENST00000444458 PCBP2Q15366 365 aaKnown RBP eCLIP2.77□□□□□ -1.972e-14■■■□□ 15.9
CCDC88A-208ENST00000444458 SPECC1Q5M775 1068 aa2.77□□□□□ -1.97
CCDC88A-208ENST00000444458 RC3H1Q5TC82 1133 aaKnown RBP2.77□□□□□ -1.97
CCDC88A-208ENST00000444458 EPM2AIP1Q7L775 607 aaPredicted RBP2.77□□□□□ -1.97
CCDC88A-208ENST00000444458 NXPE1Q8N323 547 aa2.77□□□□□ -1.97
CCDC88A-208ENST00000444458 CHCHD4Q8N4Q1 142 aa2.77□□□□□ -1.97
CCDC88A-208ENST00000444458 CAMKK1Q8N5S9 505 aa2.77□□□□□ -1.97
CCDC88A-208ENST00000444458 NUP133Q8WUM0 1156 aa2.77□□□□□ -1.97
CCDC88A-208ENST00000444458 DHRS1Q96LJ7 313 aa2.77□□□□□ -1.97
CCDC88A-208ENST00000444458 RNF38Q9H0F5 515 aa2.77□□□□□ -1.97
CCDC88A-208ENST00000444458 MYLK2Q9H1R3 596 aa2.77□□□□□ -1.97
CCDC88A-208ENST00000444458 IL21Q9HBE4 155 aa2.77□□□□□ -1.97
CCDC88A-208ENST00000444458 AAASQ9NRG9 546 aa2.77□□□□□ -1.97
CCDC88A-208ENST00000444458 REV1Q9UBZ9 1251 aa2.77□□□□□ -1.97
CCDC88A-208ENST00000444458 GTF2IRD1Q9UHL9 959 aa2.77□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms