RNA–Protein interactions for RNA: ENST00000442234.5

LIG4-203, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 3,982 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-203ENST00000442234 TPCN1Q9ULQ1 816 aa3.12□□□□□ -1.91
LIG4-203ENST00000442234 ANGEL1Q9UNK9 670 aaKnown RBP3.12□□□□□ -1.91
LIG4-203ENST00000442234 ADGRG1Q9Y653 693 aa3.12□□□□□ -1.91
LIG4-203ENST00000442234 RPGRIP1LQ68CZ1 1315 aa3.12□□□□□ -1.91
LIG4-203ENST00000442234 AK9Q5TCS8 1911 aa3.12□□□□□ -1.91
LIG4-203ENST00000442234 MROH1Q8NDA8 1641 aa3.12□□□□□ -1.91
LIG4-203ENST00000442234 TNS1Q9HBL0 1735 aaKnown RBP3.12□□□□□ -1.91
LIG4-203ENST00000442234 LAMB1P07942 1786 aa3.12□□□□□ -1.91
LIG4-203ENST00000442234 ZNF462Q96JM2 2506 aa3.11□□□□□ -1.91
LIG4-203ENST00000442234 LRRD1A4D1F6 860 aa3.11□□□□□ -1.91
LIG4-203ENST00000442234 CCDC151A5D8V7 595 aa3.11□□□□□ -1.91
LIG4-203ENST00000442234 BTBD11A6QL63 1104 aa3.11□□□□□ -1.91
LIG4-203ENST00000442234 H3BQF6 201 aa3.11□□□□□ -1.91
LIG4-203ENST00000442234 SASH3O75995 380 aa3.11□□□□□ -1.91
LIG4-203ENST00000442234 GNAT1P11488 350 aa3.11□□□□□ -1.91
LIG4-203ENST00000442234 ECE1P42892 770 aa3.11□□□□□ -1.91
LIG4-203ENST00000442234 POLE2P56282 527 aa3.11□□□□□ -1.91
LIG4-203ENST00000442234 GNG11P61952 73 aa3.11□□□□□ -1.91
LIG4-203ENST00000442234 TYRO3Q06418 890 aa3.11□□□□□ -1.91
LIG4-203ENST00000442234 SLFN5Q08AF3 891 aa3.11□□□□□ -1.91
LIG4-203ENST00000442234 MYO1EQ12965 1108 aa3.11□□□□□ -1.91
LIG4-203ENST00000442234 BRD3Q15059 726 aa3.11□□□□□ -1.91
LIG4-203ENST00000442234 CCDC57Q2TAC2 916 aa3.11□□□□□ -1.91
LIG4-203ENST00000442234 TBC1D9BQ66K14 1250 aa3.11□□□□□ -1.91
LIG4-203ENST00000442234 GIGYF2Q6Y7W6 1299 aaKnown RBP3.11□□□□□ -1.91
LIG4-203ENST00000442234 KIF6Q6ZMV9 814 aa3.11□□□□□ -1.91
LIG4-203ENST00000442234 SYNE3Q6ZMZ3 975 aa3.11□□□□□ -1.91
LIG4-203ENST00000442234 CCDC129Q6ZRS4 1044 aa3.11□□□□□ -1.91
LIG4-203ENST00000442234 TBC1D9Q6ZT07 1266 aa3.11□□□□□ -1.91
LIG4-203ENST00000442234 LRRC8AQ8IWT6 810 aa3.11□□□□□ -1.91
LIG4-203ENST00000442234 PARP9Q8IXQ6 854 aa3.11□□□□□ -1.91
LIG4-203ENST00000442234 DDX12PQ92771 950 aa3.11□□□□□ -1.91
LIG4-203ENST00000442234 TEKT1Q969V4 418 aa3.11□□□□□ -1.91
LIG4-203ENST00000442234 ALS2CR12Q96Q35 445 aa3.11□□□□□ -1.91
LIG4-203ENST00000442234 HELLSQ9NRZ9 838 aa3.11□□□□□ -1.91
LIG4-203ENST00000442234 SPATA7Q9P0W8 599 aa3.11□□□□□ -1.91
LIG4-203ENST00000442234 RABL2AQ9UBK7 228 aaPredicted RBP3.11□□□□□ -1.91
LIG4-203ENST00000442234 HDAC6Q9UBN7 1215 aa3.11□□□□□ -1.91
LIG4-203ENST00000442234 RAPGEFL1Q9UHV5 662 aa3.11□□□□□ -1.91
LIG4-203ENST00000442234 CD2APQ9Y5K6 639 aa3.11□□□□□ -1.91
LIG4-203ENST00000442234 TMEM265A0A087WTH1 108 aa3.11□□□□□ -1.91
LIG4-203ENST00000442234 GLTPD2A6NH11 291 aa3.11□□□□□ -1.91
LIG4-203ENST00000442234 OPA1O60313 960 aa3.11□□□□□ -1.91
LIG4-203ENST00000442234 PARP1P09874 1014 aaKnown RBP3.11□□□□□ -1.91
LIG4-203ENST00000442234 MYBL1P10243 752 aa3.11□□□□□ -1.91
LIG4-203ENST00000442234 ABL2P42684 1182 aa3.11□□□□□ -1.91
LIG4-203ENST00000442234 SCNN1DP51172 638 aa3.11□□□□□ -1.91
LIG4-203ENST00000442234 RHBDL3P58872 404 aa3.11□□□□□ -1.91
LIG4-203ENST00000442234 MAP2K5Q13163 448 aa3.11□□□□□ -1.91
LIG4-203ENST00000442234 TCIRG1Q13488 830 aa3.11□□□□□ -1.91
LIG4-203ENST00000442234 RASA3Q14644 834 aa3.11□□□□□ -1.91
LIG4-203ENST00000442234 TUSC1Q2TAM9 212 aa3.11□□□□□ -1.91
LIG4-203ENST00000442234 TPTE2Q6XPS3 522 aa3.11□□□□□ -1.91
LIG4-203ENST00000442234 SAPCD2Q86UD0 394 aa3.11□□□□□ -1.91
LIG4-203ENST00000442234 CCDC47Q96A33 483 aaKnown RBP3.11□□□□□ -1.91
LIG4-203ENST00000442234 ZC3H12CQ9C0D7 883 aaKnown RBP3.11□□□□□ -1.91
LIG4-203ENST00000442234 HYPKQ9NX55 129 aa3.11□□□□□ -1.91
LIG4-203ENST00000442234 CNPY2Q9Y2B0 182 aa3.11□□□□□ -1.91
LIG4-203ENST00000442234 AKAP2Q9Y2D5 859 aa3.11□□□□□ -1.91
LIG4-203ENST00000442234 USP16Q9Y5T5 823 aa3.11□□□□□ -1.91
LIG4-203ENST00000442234 KCPQ6ZWJ8 1503 aa3.11□□□□□ -1.91
LIG4-203ENST00000442234 MYO5CQ9NQX4 1742 aa3.11□□□□□ -1.91
LIG4-203ENST00000442234 ZSCAN9O15535 394 aaPredicted RBP3.11□□□□□ -1.91
LIG4-203ENST00000442234 AHCYL1O43865 530 aa3.11□□□□□ -1.91
LIG4-203ENST00000442234 ZEB2O60315 1214 aa3.11□□□□□ -1.91
LIG4-203ENST00000442234 RNF40O75150 1001 aa3.11□□□□□ -1.91
LIG4-203ENST00000442234 RPS6KA5O75582 802 aa3.11□□□□□ -1.91
LIG4-203ENST00000442234 GYS1P13807 737 aa3.11□□□□□ -1.91
LIG4-203ENST00000442234 FERP16591 822 aa3.11□□□□□ -1.91
LIG4-203ENST00000442234 GMPSP49915 693 aaPredicted RBP3.11□□□□□ -1.91
LIG4-203ENST00000442234 ETF1P62495 437 aaKnown RBP3.11□□□□□ -1.91
LIG4-203ENST00000442234 KIF23Q02241 960 aaPredicted RBP3.11□□□□□ -1.91
LIG4-203ENST00000442234 DDR1Q08345 913 aa3.11□□□□□ -1.91
LIG4-203ENST00000442234 SLC27A3Q5K4L6 730 aa3.11□□□□□ -1.91
LIG4-203ENST00000442234 INTS3Q68E01 1043 aaKnown RBP3.11□□□□□ -1.91
LIG4-203ENST00000442234 WDR75Q8IWA0 830 aaKnown RBP3.11□□□□□ -1.91
LIG4-203ENST00000442234 DZIP1LQ8IYY4 767 aaKnown RBP3.11□□□□□ -1.91
LIG4-203ENST00000442234 NBPF15Q8N660 670 aa3.11□□□□□ -1.91
LIG4-203ENST00000442234 TMCO5AQ8N6Q1 288 aa3.11□□□□□ -1.91
LIG4-203ENST00000442234 GBP7Q8N8V2 638 aaPredicted RBP3.11□□□□□ -1.91
LIG4-203ENST00000442234 ATRIPQ8WXE1 791 aa3.11□□□□□ -1.91
LIG4-203ENST00000442234 DTNBP1Q96EV8 351 aa3.11□□□□□ -1.91
LIG4-203ENST00000442234 BUD13Q9BRD0 619 aaKnown RBP eCLIP3.11□□□□□ -1.91
LIG4-203ENST00000442234 MTA3Q9BTC8 594 aa3.11□□□□□ -1.91
LIG4-203ENST00000442234 FAM117AQ9C073 453 aa3.11□□□□□ -1.91
LIG4-203ENST00000442234 RHBDL2Q9NX52 303 aa3.11□□□□□ -1.91
LIG4-203ENST00000442234 FBXO9Q9UK97 447 aaPredicted RBP3.11□□□□□ -1.91
LIG4-203ENST00000442234 SZT2Q5T011 3432 aa3.11□□□□□ -1.91
LIG4-203ENST00000442234 LSM1O15116 133 aaKnown RBP3.1□□□□□ -1.91
LIG4-203ENST00000442234 WDHD1O75717 1129 aaPredicted RBP3.1□□□□□ -1.91
LIG4-203ENST00000442234 RHOXF2BP0C7M4 288 aa3.1□□□□□ -1.91
LIG4-203ENST00000442234 CYP11B2P19099 503 aa3.1□□□□□ -1.91
LIG4-203ENST00000442234 GNGT1P63211 74 aa3.1□□□□□ -1.91
LIG4-203ENST00000442234 ROR2Q01974 943 aaKnown RBP3.1□□□□□ -1.91
LIG4-203ENST00000442234 AKAP17AQ02040 695 aaKnown RBP3.1□□□□□ -1.91
LIG4-203ENST00000442234 MMRN1Q13201 1228 aa3.1□□□□□ -1.91
LIG4-203ENST00000442234 CUL4BQ13620 913 aa3.1□□□□□ -1.91
LIG4-203ENST00000442234 SEPT7Q16181 437 aaKnown RBP3.1□□□□□ -1.91
LIG4-203ENST00000442234 IMMTQ16891 758 aaKnown RBP3.1□□□□□ -1.91
LIG4-203ENST00000442234 TCERG1LQ5VWI1 586 aa3.1□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms