RNA–Protein interactions for RNA: ENST00000442201.6

CCDC39-201, Transcript of coiled-coil domain containing 39, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CCDC39, Length 3,279 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-201ENST00000442201 PALM3A6NDB9 673 aaPredicted RBP9.31□□□□□ -0.92
CCDC39-201ENST00000442201 FIBPO43427 364 aa9.31□□□□□ -0.92
CCDC39-201ENST00000442201 SAFBQ15424 915 aaKnown RBP eCLIP9.31□□□□□ -0.92
CCDC39-201ENST00000442201 SASS6Q6UVJ0 657 aa9.31□□□□□ -0.92
CCDC39-201ENST00000442201 LRRC47Q8N1G4 583 aaKnown RBP9.31□□□□□ -0.92
CCDC39-201ENST00000442201 STAG2Q8N3U4 1231 aa9.31□□□□□ -0.92
CCDC39-201ENST00000442201 NYAP2Q9P242 653 aa9.31□□□□□ -0.92
CCDC39-201ENST00000442201 KLRF2D3W0D1 207 aa9.31□□□□□ -0.92
CCDC39-201ENST00000442201 TBC1D12O60347 775 aa9.31□□□□□ -0.92
CCDC39-201ENST00000442201 GDF11O95390 407 aa9.31□□□□□ -0.92
CCDC39-201ENST00000442201 GNL2Q13823 731 aaKnown RBP9.31□□□□□ -0.92
CCDC39-201ENST00000442201 SEPT2Q15019 361 aa9.31□□□□□ -0.92
CCDC39-201ENST00000442201 C9orf131Q5VYM1 1079 aa9.31□□□□□ -0.92
CCDC39-201ENST00000442201 BRAPQ7Z569 592 aa9.31□□□□□ -0.92
CCDC39-201ENST00000442201 HACL1Q9UJ83 578 aa9.31□□□□□ -0.92
CCDC39-201ENST00000442201 DDX49Q9Y6V7 483 aaKnown RBP9.31□□□□□ -0.92
CCDC39-201ENST00000442201 GH2P01242 217 aa9.3□□□□□ -0.92
CCDC39-201ENST00000442201 KIF23Q02241 960 aaPredicted RBP9.3□□□□□ -0.92
CCDC39-201ENST00000442201 ICA1Q05084 483 aa9.3□□□□□ -0.92
CCDC39-201ENST00000442201 PKN1Q16512 942 aa9.3□□□□□ -0.92
CCDC39-201ENST00000442201 GPR162Q16538 588 aa9.3□□□□□ -0.92
CCDC39-201ENST00000442201 USP17L2Q6R6M4 530 aa9.3□□□□□ -0.92
CCDC39-201ENST00000442201 USP48Q86UV5 1035 aa9.3□□□□□ -0.92
CCDC39-201ENST00000442201 TMEM87AQ8NBN3 555 aa9.3□□□□□ -0.92
CCDC39-201ENST00000442201 SCAND2PQ9GZW5 306 aaPredicted RBP9.3□□□□□ -0.92
CCDC39-201ENST00000442201 CFAP45Q9UL16 551 aa9.3□□□□□ -0.92
CCDC39-201ENST00000442201 hCG_1642624A0A1W2PR95 340 aa9.3□□□□□ -0.92
CCDC39-201ENST00000442201 DDNO94850 711 aaPredicted RBP9.3□□□□□ -0.92
CCDC39-201ENST00000442201 GOLGA8HP0CJ92 632 aa9.3□□□□□ -0.92
CCDC39-201ENST00000442201 PDHBP11177 359 aa9.3□□□□□ -0.92
CCDC39-201ENST00000442201 EEF2P13639 858 aaKnown RBP9.3□□□□□ -0.92
CCDC39-201ENST00000442201 ASPRV1Q53RT3 343 aa9.3□□□□□ -0.92
CCDC39-201ENST00000442201 ATL3Q6DD88 541 aa9.3□□□□□ -0.92
CCDC39-201ENST00000442201 CDAN1Q8IWY9 1227 aa9.3□□□□□ -0.92
CCDC39-201ENST00000442201 MKL1Q969V6 931 aa9.3□□□□□ -0.92
CCDC39-201ENST00000442201 ZNF396Q96N95 335 aaPredicted RBP9.3□□□□□ -0.92
CCDC39-201ENST00000442201 CGNQ9P2M7 1197 aaKnown RBP9.3□□□□□ -0.92
CCDC39-201ENST00000442201 TFIP11Q9UBB9 837 aaKnown RBP9.3□□□□□ -0.92
CCDC39-201ENST00000442201 USP17L5A8MUK1 530 aa9.3□□□□□ -0.92
CCDC39-201ENST00000442201 SCG2P13521 617 aa9.3□□□□□ -0.92
CCDC39-201ENST00000442201 LMOD1P29536 600 aaPredicted RBP9.3□□□□□ -0.92
CCDC39-201ENST00000442201 SHROOM1Q2M3G4 852 aaPredicted RBP9.3□□□□□ -0.92
CCDC39-201ENST00000442201 MIGA2Q7L4E1 593 aa9.3□□□□□ -0.92
CCDC39-201ENST00000442201 SPZ1Q9BXG8 430 aa9.3□□□□□ -0.92
CCDC39-201ENST00000442201 DEFB129Q9H1M3 183 aa9.3□□□□□ -0.92
CCDC39-201ENST00000442201 PGAP2Q9UHJ9 254 aa9.3□□□□□ -0.92
CCDC39-201ENST00000442201 ASTN2O75129 1339 aaPredicted RBP9.29□□□□□ -0.92
CCDC39-201ENST00000442201 MMP1P03956 469 aa9.29□□□□□ -0.92
CCDC39-201ENST00000442201 PTMAP06454 111 aaKnown RBP9.29□□□□□ -0.92
CCDC39-201ENST00000442201 SNHG28P0DPA3 235 aa9.29□□□□□ -0.92
CCDC39-201ENST00000442201 SMARCA1P28370 1054 aa9.29□□□□□ -0.92
CCDC39-201ENST00000442201 GTF2F1P35269 517 aaKnown RBP eCLIP9.29□□□□□ -0.92
CCDC39-201ENST00000442201 EPS15P42566 896 aa9.29□□□□□ -0.92
CCDC39-201ENST00000442201 KLHL40Q2TBA0 621 aa9.29□□□□□ -0.92
CCDC39-201ENST00000442201 APOBEC3FQ8IUX4 373 aaKnown RBP9.29□□□□□ -0.92
CCDC39-201ENST00000442201 TRPM4Q8TD43 1214 aa9.29□□□□□ -0.92
CCDC39-201ENST00000442201 PIBF1Q8WXW3 757 aa9.29□□□□□ -0.92
CCDC39-201ENST00000442201 ARID3AQ99856 593 aa9.29□□□□□ -0.92
CCDC39-201ENST00000442201 NOL7Q9UMY1 257 aaKnown RBP9.29□□□□□ -0.92
CCDC39-201ENST00000442201 KCNJ14Q9UNX9 436 aa9.29□□□□□ -0.92
CCDC39-201ENST00000442201 SCAF8Q9UPN6 1271 aaKnown RBP9.29□□□□□ -0.92
CCDC39-201ENST00000442201 MBD3O95983 291 aa9.29□□□□□ -0.92
CCDC39-201ENST00000442201 FAM193AP78312 1265 aa9.29□□□□□ -0.92
CCDC39-201ENST00000442201 MAP3K10Q02779 954 aa9.29□□□□□ -0.92
CCDC39-201ENST00000442201 RRP1BQ14684 758 aaKnown RBP9.29□□□□□ -0.92
CCDC39-201ENST00000442201 PFKFB3Q16875 520 aaPredicted RBP9.29□□□□□ -0.92
CCDC39-201ENST00000442201 ANGEL2Q5VTE6 544 aaKnown RBP9.29□□□□□ -0.92
CCDC39-201ENST00000442201 RASGRP2Q7LDG7 609 aa9.29□□□□□ -0.92
CCDC39-201ENST00000442201 DIS3L2Q8IYB7 885 aaKnown RBP9.29□□□□□ -0.92
CCDC39-201ENST00000442201 SPATA32Q96LK8 384 aa9.29□□□□□ -0.92
CCDC39-201ENST00000442201 TEPSINQ96N21 525 aa9.29□□□□□ -0.92
CCDC39-201ENST00000442201 VPS54Q9P1Q0 977 aa9.29□□□□□ -0.92
CCDC39-201ENST00000442201 KIF28PB7ZC32 967 aa9.29□□□□□ -0.92
CCDC39-201ENST00000442201 MSNP26038 577 aaKnown RBP9.29□□□□□ -0.92
CCDC39-201ENST00000442201 GPATCH4Q5T3I0 446 aaKnown RBP9.29□□□□□ -0.92
CCDC39-201ENST00000442201 DPY19L2Q6NUT2 758 aa9.29□□□□□ -0.92
CCDC39-201ENST00000442201 SIPA1L1O43166 1804 aa9.28□□□□□ -0.92
CCDC39-201ENST00000442201 CYTH3O43739 400 aa9.28□□□□□ -0.92
CCDC39-201ENST00000442201 GRIN3BO60391 1043 aa9.28□□□□□ -0.92
CCDC39-201ENST00000442201 MYCNP04198 464 aaPredicted RBP9.28□□□□□ -0.92
CCDC39-201ENST00000442201 U2AF2P26368 475 aaKnown RBP eCLIP9.28□□□□□ -0.92
CCDC39-201ENST00000442201 JAG1P78504 1218 aa9.28□□□□□ -0.92
CCDC39-201ENST00000442201 ZNF543Q08ER8 600 aa9.28□□□□□ -0.92
CCDC39-201ENST00000442201 CCDC96Q2M329 555 aa9.28□□□□□ -0.92
CCDC39-201ENST00000442201 MYSM1Q5VVJ2 828 aa9.28□□□□□ -0.92
CCDC39-201ENST00000442201 SIAH1Q8IUQ4 282 aa9.28□□□□□ -0.92
CCDC39-201ENST00000442201 ZBTB21Q9ULJ3 1066 aa9.28□□□□□ -0.92
CCDC39-201ENST00000442201 ELP1O95163 1332 aa9.28□□□□□ -0.92
CCDC39-201ENST00000442201 FRMPD2Q68DX3 1309 aaPredicted RBP9.28□□□□□ -0.92
CCDC39-201ENST00000442201 BTBD18B2RXH4 712 aa9.28□□□□□ -0.92
CCDC39-201ENST00000442201 RAD21O60216 631 aa9.28□□□□□ -0.92
CCDC39-201ENST00000442201 CAP2P40123 477 aa9.28□□□□□ -0.92
CCDC39-201ENST00000442201 UBE2HP62256 183 aa9.28□□□□□ -0.92
CCDC39-201ENST00000442201 SLC35G1Q2M3R5 365 aa9.28□□□□□ -0.92
CCDC39-201ENST00000442201 LEO1Q8WVC0 666 aaPredicted RBP9.28□□□□□ -0.92
CCDC39-201ENST00000442201 HOOK2Q96ED9 719 aa9.28□□□□□ -0.92
CCDC39-201ENST00000442201 RRP36Q96EU6 259 aaKnown RBP9.28□□□□□ -0.92
CCDC39-201ENST00000442201 USP28Q96RU2 1077 aa9.28□□□□□ -0.92
CCDC39-201ENST00000442201 FOXP1Q9H334 677 aaPredicted RBP9.28□□□□□ -0.92
CCDC39-201ENST00000442201 ARHGEF10LQ9HCE6 1279 aa9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms