RNA–Protein interactions for RNA: ENST00000435425.1

SHH-203, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 807 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-203ENST00000435425 PTCH2Q9Y6C5 1203 aa22■■□□□ 1.11
SHH-203ENST00000435425 COL11A1P12107 1806 aaPredicted RBP22■■□□□ 1.11
SHH-203ENST00000435425 DOCK3Q8IZD9 2030 aa21.99■■□□□ 1.11
SHH-203ENST00000435425 GNRH1P01148 92 aa21.99■■□□□ 1.11
SHH-203ENST00000435425 GMCL1P1Q8NEA9 526 aa21.99■■□□□ 1.11
SHH-203ENST00000435425 CNNM2Q9H8M5 875 aa21.99■■□□□ 1.11
SHH-203ENST00000435425 SRRDQ9UH36 339 aa21.99■■□□□ 1.11
SHH-203ENST00000435425 GABRQQ9UN88 632 aa21.99■■□□□ 1.11
SHH-203ENST00000435425 TAF6LQ9Y6J9 622 aa21.99■■□□□ 1.11
SHH-203ENST00000435425 MYPNQ86TC9 1320 aa21.99■■□□□ 1.11
SHH-203ENST00000435425 CCDC85CA6NKD9 419 aa21.98■■□□□ 1.11
SHH-203ENST00000435425 MCCP23508 829 aa21.98■■□□□ 1.11
SHH-203ENST00000435425 TRDNQ13061 729 aa21.98■■□□□ 1.11
SHH-203ENST00000435425 PLS1Q14651 629 aa21.98■■□□□ 1.11
SHH-203ENST00000435425 WDR78Q5VTH9 848 aa21.98■■□□□ 1.11
SHH-203ENST00000435425 LBX2Q6XYB7 198 aa21.98■■□□□ 1.11
SHH-203ENST00000435425 COA7Q96BR5 231 aa21.98■■□□□ 1.11
SHH-203ENST00000435425 TMEM47Q9BQJ4 181 aa21.98■■□□□ 1.11
SHH-203ENST00000435425 CWC22Q9HCG8 908 aaKnown RBP21.98■■□□□ 1.11
SHH-203ENST00000435425 ZSWIM5Q9P217 1185 aa21.98■■□□□ 1.11
SHH-203ENST00000435425 SYNPO2Q9UMS6 1093 aa21.98■■□□□ 1.11
SHH-203ENST00000435425 TOP1P11387 765 aaKnown RBP21.97■■□□□ 1.11
SHH-203ENST00000435425 BMP3P12645 472 aa21.97■■□□□ 1.11
SHH-203ENST00000435425 PRKCZQ05513 592 aa21.97■■□□□ 1.11
SHH-203ENST00000435425 IQCA1Q86XH1 822 aa21.97■■□□□ 1.11
SHH-203ENST00000435425 RAET1EQ8TD07 263 aa21.97■■□□□ 1.11
SHH-203ENST00000435425 PORCNQ9H237 461 aa21.97■■□□□ 1.11
SHH-203ENST00000435425 E7EWF7 191 aa21.96■■□□□ 1.11
SHH-203ENST00000435425 SLC1A4P43007 532 aa21.96■■□□□ 1.11
SHH-203ENST00000435425 NOVP48745 357 aa21.96■■□□□ 1.11
SHH-203ENST00000435425 PRMT2P55345 433 aa21.96■■□□□ 1.11
SHH-203ENST00000435425 CCNA1P78396 465 aa21.96■■□□□ 1.11
SHH-203ENST00000435425 RCSD1Q6JBY9 416 aa21.96■■□□□ 1.11
SHH-203ENST00000435425 RASGRP2Q7LDG7 609 aa21.96■■□□□ 1.11
SHH-203ENST00000435425 KIFC2Q96AC6 838 aa21.96■■□□□ 1.11
SHH-203ENST00000435425 SLF1Q9BQI6 1058 aa21.96■■□□□ 1.11
SHH-203ENST00000435425 PPP1R9AQ9ULJ8 1098 aa21.96■■□□□ 1.11
SHH-203ENST00000435425 A0A0G2JMZ2 1700 aa21.96■■□□□ 1.11
SHH-203ENST00000435425 IKQ13123 557 aaPredicted RBP21.95■■□□□ 1.1
SHH-203ENST00000435425 CCDC96Q2M329 555 aa21.95■■□□□ 1.1
SHH-203ENST00000435425 KCTD1Q719H9 257 aa21.95■■□□□ 1.1
SHH-203ENST00000435425 CYB5R4Q7L1T6 521 aa21.95■■□□□ 1.1
SHH-203ENST00000435425 RALYLQ86SE5 291 aaKnown RBP21.95■■□□□ 1.1
SHH-203ENST00000435425 TTC14Q96N46 770 aa21.95■■□□□ 1.1
SHH-203ENST00000435425 ZSCAN10Q96SZ4 725 aaPredicted RBP21.95■■□□□ 1.1
SHH-203ENST00000435425 UBAC1Q9BSL1 405 aa21.95■■□□□ 1.1
SHH-203ENST00000435425 TMEM232C9JQI7 657 aa21.94■■□□□ 1.1
SHH-203ENST00000435425 SLC27A2O14975 620 aa21.94■■□□□ 1.1
SHH-203ENST00000435425 MAPK4P31152 587 aa21.94■■□□□ 1.1
SHH-203ENST00000435425 FLT3LGP49771 235 aa21.94■■□□□ 1.1
SHH-203ENST00000435425 CCDC178Q5BJE1 867 aa21.94■■□□□ 1.1
SHH-203ENST00000435425 STOX1Q6ZVD7 989 aa21.94■■□□□ 1.1
SHH-203ENST00000435425 MB21D1Q8N884 522 aa21.94■■□□□ 1.1
SHH-203ENST00000435425 NCOA7Q8NI08 942 aa21.94■■□□□ 1.1
SHH-203ENST00000435425 GMCL1Q96IK5 515 aa21.94■■□□□ 1.1
SHH-203ENST00000435425 FEM1BQ9UK73 627 aa21.94■■□□□ 1.1
SHH-203ENST00000435425 CTDP1Q9Y5B0 961 aaPredicted RBP21.94■■□□□ 1.1
SHH-203ENST00000435425 VWA5AO00534 786 aa21.93■■□□□ 1.1
SHH-203ENST00000435425 PLXNB2O15031 1838 aa21.93■■□□□ 1.1
SHH-203ENST00000435425 TNKSO95271 1327 aa21.93■■□□□ 1.1
SHH-203ENST00000435425 SLC4A3P48751 1232 aa21.93■■□□□ 1.1
SHH-203ENST00000435425 NT5C2P49902 561 aa21.93■■□□□ 1.1
SHH-203ENST00000435425 TMEM132BQ14DG7 1078 aa21.93■■□□□ 1.1
SHH-203ENST00000435425 SLC9C1Q4G0N8 1177 aa21.93■■□□□ 1.1
SHH-203ENST00000435425 CREB3L3Q68CJ9 461 aa21.93■■□□□ 1.1
SHH-203ENST00000435425 GPR142Q7Z601 462 aa21.93■■□□□ 1.1
SHH-203ENST00000435425 DGKHQ86XP1 1220 aa21.93■■□□□ 1.1
SHH-203ENST00000435425 PRPF38AQ8NAV1 312 aaKnown RBP21.93■■□□□ 1.1
SHH-203ENST00000435425 SH3TC2Q8TF17 1288 aa21.93■■□□□ 1.1
SHH-203ENST00000435425 MOV10L1Q9BXT6 1211 aaKnown RBP21.93■■□□□ 1.1
SHH-203ENST00000435425 SPATC1LQ9H0A9 340 aa21.93■■□□□ 1.1
SHH-203ENST00000435425 FRMPD2Q68DX3 1309 aaPredicted RBP21.92■■□□□ 1.1
SHH-203ENST00000435425 MYCP01106 439 aaPredicted RBP21.92■■□□□ 1.1
SHH-203ENST00000435425 NECTIN1Q15223 517 aa21.92■■□□□ 1.1
SHH-203ENST00000435425 CHST3Q7LGC8 479 aa21.92■■□□□ 1.1
SHH-203ENST00000435425 PLEKHH3Q7Z736 793 aa21.92■■□□□ 1.1
SHH-203ENST00000435425 DCAF4Q8WV16 495 aa21.92■■□□□ 1.1
SHH-203ENST00000435425 KAT14Q9H8E8 782 aa21.92■■□□□ 1.1
SHH-203ENST00000435425 GPCPD1Q9NPB8 672 aa21.92■■□□□ 1.1
SHH-203ENST00000435425 ADAMTS5Q9UNA0 930 aa21.92■■□□□ 1.1
SHH-203ENST00000435425 ZBED4O75132 1171 aa21.91■■□□□ 1.1
SHH-203ENST00000435425 STAT2P52630 851 aa21.91■■□□□ 1.1
SHH-203ENST00000435425 IFFO2Q5TF58 517 aa21.91■■□□□ 1.1
SHH-203ENST00000435425 NCAPG2Q86XI2 1143 aa21.91■■□□□ 1.1
SHH-203ENST00000435425 ENAHQ8N8S7 591 aaPredicted RBP21.91■■□□□ 1.1
SHH-203ENST00000435425 CHURC1Q8WUH1 139 aa21.91■■□□□ 1.1
SHH-203ENST00000435425 BIN2Q9UBW5 565 aaPredicted RBP21.91■■□□□ 1.1
SHH-203ENST00000435425 ERCC3P19447 782 aa21.9■■□□□ 1.1
SHH-203ENST00000435425 CYP2B6P20813 491 aa21.9■■□□□ 1.1
SHH-203ENST00000435425 TTBK2Q6IQ55 1244 aa21.9■■□□□ 1.1
SHH-203ENST00000435425 NBPF11Q86T75 865 aa21.9■■□□□ 1.1
SHH-203ENST00000435425 FAM160B2Q86V87 743 aa21.9■■□□□ 1.1
SHH-203ENST00000435425 CPXCR1Q8N123 301 aa21.9■■□□□ 1.1
SHH-203ENST00000435425 PNMA1Q8ND90 353 aa21.9■■□□□ 1.1
SHH-203ENST00000435425 NUDT12Q9BQG2 462 aa21.9■■□□□ 1.1
SHH-203ENST00000435425 GJD2Q9UKL4 321 aa21.9■■□□□ 1.1
SHH-203ENST00000435425 IVNS1ABPQ9Y6Y0 642 aa21.9■■□□□ 1.1
SHH-203ENST00000435425 IFIT3O14879 490 aaKnown RBP21.89■■□□□ 1.09
SHH-203ENST00000435425 ADCY3O60266 1144 aa21.89■■□□□ 1.09
SHH-203ENST00000435425 PDHBP11177 359 aa21.89■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms