RNA–Protein interactions for RNA: ENST00000430711.5

COL28A1-202, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 5

Gene COL28A1, Length 2,323 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-202ENST00000430711 SCN7AQ01118 1682 aa8.17□□□□□ -1.1
COL28A1-202ENST00000430711 CAMTA2O94983 1202 aa8.17□□□□□ -1.1
COL28A1-202ENST00000430711 UQCRFS1P1P0C7P4 283 aa8.17□□□□□ -1.1
COL28A1-202ENST00000430711 SLC5A1P13866 664 aa8.17□□□□□ -1.1
COL28A1-202ENST00000430711 CAPN2P17655 700 aa8.17□□□□□ -1.1
COL28A1-202ENST00000430711 CASQ1P31415 396 aa8.17□□□□□ -1.1
COL28A1-202ENST00000430711 KLK7P49862 253 aa8.17□□□□□ -1.1
COL28A1-202ENST00000430711 PTGDRQ13258 359 aa8.17□□□□□ -1.1
COL28A1-202ENST00000430711 E2F4Q16254 413 aa8.17□□□□□ -1.1
COL28A1-202ENST00000430711 TXNRD3Q86VQ6 643 aa8.17□□□□□ -1.1
COL28A1-202ENST00000430711 TICAM2Q86XR7 235 aa8.17□□□□□ -1.1
COL28A1-202ENST00000430711 CREBRFQ8IUR6 639 aa8.17□□□□□ -1.1
COL28A1-202ENST00000430711 IGSF22Q8N9C0 903 aa8.17□□□□□ -1.1
COL28A1-202ENST00000430711 NOA1Q8NC60 698 aaKnown RBP8.17□□□□□ -1.1
COL28A1-202ENST00000430711 NOL10Q9BSC4 688 aaKnown RBP8.17□□□□□ -1.1
COL28A1-202ENST00000430711 VPS16Q9H269 839 aa8.17□□□□□ -1.1
COL28A1-202ENST00000430711 HDAC6Q9UBN7 1215 aa8.17□□□□□ -1.1
COL28A1-202ENST00000430711 PPP1R1BQ9UD71 204 aaPredicted RBP8.17□□□□□ -1.1
COL28A1-202ENST00000430711 MTMR7Q9Y216 660 aa8.17□□□□□ -1.1
COL28A1-202ENST00000430711 CNTNAP5Q8WYK1 1306 aa8.16□□□□□ -1.1
COL28A1-202ENST00000430711 KIF2AO00139 706 aaPredicted RBP8.16□□□□□ -1.1
COL28A1-202ENST00000430711 CBFA2T2O43439 604 aa8.16□□□□□ -1.1
COL28A1-202ENST00000430711 KCNQ2O43526 872 aa8.16□□□□□ -1.1
COL28A1-202ENST00000430711 CYP2C19P33261 490 aa8.16□□□□□ -1.1
COL28A1-202ENST00000430711 ARHGAP25P42331 645 aa8.16□□□□□ -1.1
COL28A1-202ENST00000430711 CRKLP46109 303 aaKnown RBP8.16□□□□□ -1.1
COL28A1-202ENST00000430711 EIF5P55010 431 aaKnown RBP8.16□□□□□ -1.1
COL28A1-202ENST00000430711 HNRNPH2P55795 449 aaKnown RBP8.16□□□□□ -1.1
COL28A1-202ENST00000430711 EN1Q05925 392 aaPredicted RBP8.16□□□□□ -1.1
COL28A1-202ENST00000430711 KRT31Q15323 416 aa8.16□□□□□ -1.1
COL28A1-202ENST00000430711 GRIK5Q16478 980 aa8.16□□□□□ -1.1
COL28A1-202ENST00000430711 RILPL1Q5EBL4 403 aa8.16□□□□□ -1.1
COL28A1-202ENST00000430711 NCAPH2Q6IBW4 605 aa8.16□□□□□ -1.1
COL28A1-202ENST00000430711 CPLX2Q6PUV4 134 aaKnown RBP8.16□□□□□ -1.1
COL28A1-202ENST00000430711 AMIGO3Q86WK7 504 aa8.16□□□□□ -1.1
COL28A1-202ENST00000430711 IRF2BP1Q8IU81 584 aa8.16□□□□□ -1.1
COL28A1-202ENST00000430711 SLC35F6Q8N357 371 aa8.16□□□□□ -1.1
COL28A1-202ENST00000430711 CELF1Q92879 486 aaKnown RBP8.16□□□□□ -1.1
COL28A1-202ENST00000430711 MPHOSPH8Q99549 860 aa8.16□□□□□ -1.1
COL28A1-202ENST00000430711 SPON1Q9HCB6 807 aa8.16□□□□□ -1.1
COL28A1-202ENST00000430711 TFCP2L1Q9NZI6 479 aa8.16□□□□□ -1.1
COL28A1-202ENST00000430711 MROH5Q6ZUA9 1318 aa8.16□□□□□ -1.1
COL28A1-202ENST00000430711 PNPLA7Q6ZV29 1317 aa8.16□□□□□ -1.1
COL28A1-202ENST00000430711 DLEC1Q9Y238 1755 aa8.16□□□□□ -1.1
COL28A1-202ENST00000430711 EFCAB8A8MWE9 144 aa8.15□□□□□ -1.1
COL28A1-202ENST00000430711 STX10O60499 249 aa8.15□□□□□ -1.1
COL28A1-202ENST00000430711 MCM7P33993 719 aa8.15□□□□□ -1.1
COL28A1-202ENST00000430711 ERFEQ4G0M1 354 aa8.15□□□□□ -1.1
COL28A1-202ENST00000430711 PDXDC2PQ6P474 469 aa8.15□□□□□ -1.1
COL28A1-202ENST00000430711 CTR9Q6PD62 1173 aa8.15□□□□□ -1.1
COL28A1-202ENST00000430711 FOXR1Q6PIV2 292 aa8.15□□□□□ -1.1
COL28A1-202ENST00000430711 TMCO3Q6UWJ1 677 aa8.15□□□□□ -1.1
COL28A1-202ENST00000430711 BICDL1Q6ZP65 573 aa8.15□□□□□ -1.1
COL28A1-202ENST00000430711 PIK3AP1Q6ZUJ8 805 aa8.15□□□□□ -1.1
COL28A1-202ENST00000430711 STAG2Q8N3U4 1231 aa8.15□□□□□ -1.1
COL28A1-202ENST00000430711 MLKLQ8NB16 471 aa8.15□□□□□ -1.1
COL28A1-202ENST00000430711 SPOCK2Q92563 424 aa8.15□□□□□ -1.1
COL28A1-202ENST00000430711 HPS3Q969F9 1004 aa8.15□□□□□ -1.1
COL28A1-202ENST00000430711 KRT23Q9C075 422 aa8.15□□□□□ -1.1
COL28A1-202ENST00000430711 LCMT1Q9UIC8 334 aa8.15□□□□□ -1.1
COL28A1-202ENST00000430711 TRIM75PA6NK02 468 aa8.15□□□□□ -1.1
COL28A1-202ENST00000430711 USP17L12C9JPN9 530 aa8.15□□□□□ -1.1
COL28A1-202ENST00000430711 USP17L21D6R901 530 aa8.15□□□□□ -1.1
COL28A1-202ENST00000430711 ENC1O14682 589 aa8.15□□□□□ -1.1
COL28A1-202ENST00000430711 SRGAP2O75044 1071 aa8.15□□□□□ -1.1
COL28A1-202ENST00000430711 MFAP3LO75121 409 aa8.15□□□□□ -1.1
COL28A1-202ENST00000430711 RHOXF2BP0C7M4 288 aa8.15□□□□□ -1.1
COL28A1-202ENST00000430711 PRDX5P30044 214 aa8.15□□□□□ -1.1
COL28A1-202ENST00000430711 BMS1Q14692 1282 aaKnown RBP8.15□□□□□ -1.1
COL28A1-202ENST00000430711 ZNF569Q5MCW4 686 aa8.15□□□□□ -1.1
COL28A1-202ENST00000430711 TRIM22Q8IYM9 498 aa8.15□□□□□ -1.1
COL28A1-202ENST00000430711 GPR101Q96P66 508 aaPredicted RBP8.15□□□□□ -1.1
COL28A1-202ENST00000430711 ZSCAN10Q96SZ4 725 aaPredicted RBP8.15□□□□□ -1.1
COL28A1-202ENST00000430711 RHOXF2Q9BQY4 288 aa8.15□□□□□ -1.1
COL28A1-202ENST00000430711 UBAC1Q9BSL1 405 aa8.15□□□□□ -1.1
COL28A1-202ENST00000430711 TMEM60Q9H2L4 133 aa8.15□□□□□ -1.1
COL28A1-202ENST00000430711 AATFQ9NY61 560 aaKnown RBP eCLIP8.15□□□□□ -1.1
COL28A1-202ENST00000430711 NIP7Q9Y221 180 aaKnown RBP eCLIP8.15□□□□□ -1.1
COL28A1-202ENST00000430711 MAGEB6P1A0A0J9YX57 407 aa8.14□□□□□ -1.11
COL28A1-202ENST00000430711 RCCD1A6NED2 376 aa8.14□□□□□ -1.11
COL28A1-202ENST00000430711 AKR1B15C9JRZ8 316 aaPredicted RBP8.14□□□□□ -1.11
COL28A1-202ENST00000430711 PRELPP51888 382 aa8.14□□□□□ -1.11
COL28A1-202ENST00000430711 IRX5P78411 483 aaPredicted RBP8.14□□□□□ -1.11
COL28A1-202ENST00000430711 MRPS25P82663 173 aaKnown RBP8.14□□□□□ -1.11
COL28A1-202ENST00000430711 SAFBQ15424 915 aaKnown RBP eCLIP8.14□□□□□ -1.11
COL28A1-202ENST00000430711 RCSD1Q6JBY9 416 aa8.14□□□□□ -1.11
COL28A1-202ENST00000430711 GSPT2Q8IYD1 628 aaKnown RBP8.14□□□□□ -1.11
COL28A1-202ENST00000430711 SLC44A5Q8NCS7 719 aa8.14□□□□□ -1.11
COL28A1-202ENST00000430711 DYNLL2Q96FJ2 89 aa8.14□□□□□ -1.11
COL28A1-202ENST00000430711 GDAP1L1Q96MZ0 367 aa8.14□□□□□ -1.11
COL28A1-202ENST00000430711 SLF1Q9BQI6 1058 aa8.14□□□□□ -1.11
COL28A1-202ENST00000430711 KIAA1551Q9HCM1 1747 aa8.14□□□□□ -1.11
COL28A1-202ENST00000430711 LAMB2P55268 1798 aa8.14□□□□□ -1.11
COL28A1-202ENST00000430711 ERCC3P19447 782 aa8.14□□□□□ -1.11
COL28A1-202ENST00000430711 KRT2P35908 639 aa8.14□□□□□ -1.11
COL28A1-202ENST00000430711 IL6STP40189 918 aaPredicted RBP8.14□□□□□ -1.11
COL28A1-202ENST00000430711 VSNL1P62760 191 aa8.14□□□□□ -1.11
COL28A1-202ENST00000430711 SMC1AQ14683 1233 aaKnown RBP8.14□□□□□ -1.11
COL28A1-202ENST00000430711 LONRF2Q1L5Z9 754 aa8.14□□□□□ -1.11
COL28A1-202ENST00000430711 NAALADL2Q58DX5 795 aa8.14□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms