RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 GDF11O95390 407 aa9.53□□□□□ -0.88
CD44-208ENST00000428726 ZSCAN20P17040 1043 aaPredicted RBP9.53□□□□□ -0.88
CD44-208ENST00000428726 JMYQ8N9B5 988 aa9.53□□□□□ -0.88
CD44-208ENST00000428726 LZTFL1Q9NQ48 299 aa9.53□□□□□ -0.88
CD44-208ENST00000428726 RNF216Q9NWF9 866 aaPredicted RBP9.53□□□□□ -0.88
CD44-208ENST00000428726 TBC1D7Q9P0N9 293 aa9.53□□□□□ -0.88
CD44-208ENST00000428726 CTNND2Q9UQB3 1225 aa9.53□□□□□ -0.88
CD44-208ENST00000428726 CHD4Q14839 1912 aa9.52□□□□□ -0.89
CD44-208ENST00000428726 ABL1P00519 1130 aa9.52□□□□□ -0.89
CD44-208ENST00000428726 SFPQP23246 707 aaKnown RBP eCLIP9.52□□□□□ -0.89
CD44-208ENST00000428726 TECP42680 631 aa9.52□□□□□ -0.89
CD44-208ENST00000428726 IKQ13123 557 aaPredicted RBP9.52□□□□□ -0.89
CD44-208ENST00000428726 ENOX2Q16206 610 aaKnown RBP9.52□□□□□ -0.89
CD44-208ENST00000428726 TXNRD1Q16881 649 aa9.52□□□□□ -0.89
CD44-208ENST00000428726 TMTC3Q6ZXV5 915 aa9.52□□□□□ -0.89
CD44-208ENST00000428726 DYMQ7RTS9 669 aa9.52□□□□□ -0.89
CD44-208ENST00000428726 TBC1D16Q8TBP0 767 aa9.52□□□□□ -0.89
CD44-208ENST00000428726 MTA3Q9BTC8 594 aa9.52□□□□□ -0.89
CD44-208ENST00000428726 SPTLC3Q9NUV7 552 aa9.52□□□□□ -0.89
CD44-208ENST00000428726 DNAI1Q9UI46 699 aa9.52□□□□□ -0.89
CD44-208ENST00000428726 TIAM2Q8IVF5 1701 aa9.52□□□□□ -0.89
CD44-208ENST00000428726 CCDC196A0A1B0GTZ2 297 aa9.52□□□□□ -0.89
CD44-208ENST00000428726 CCNT1O60563 726 aaKnown RBP9.52□□□□□ -0.89
CD44-208ENST00000428726 SCG2P13521 617 aa9.52□□□□□ -0.89
CD44-208ENST00000428726 TXKP42681 527 aa9.52□□□□□ -0.89
CD44-208ENST00000428726 CDK8P49336 464 aa9.52□□□□□ -0.89
CD44-208ENST00000428726 NAPAP54920 295 aa9.52□□□□□ -0.89
CD44-208ENST00000428726 CCZ1BP86790 482 aa9.52□□□□□ -0.89
CD44-208ENST00000428726 CCZ1P86791 482 aaPredicted RBP9.52□□□□□ -0.89
CD44-208ENST00000428726 FUT2Q10981 343 aa9.52□□□□□ -0.89
CD44-208ENST00000428726 PTPN14Q15678 1187 aa9.52□□□□□ -0.89
CD44-208ENST00000428726 RRAGBQ5VZM2 374 aa9.52□□□□□ -0.89
CD44-208ENST00000428726 WWC2Q6AWC2 1192 aa9.52□□□□□ -0.89
CD44-208ENST00000428726 CERS5Q8N5B7 392 aa9.52□□□□□ -0.89
CD44-208ENST00000428726 MAP7D2Q96T17 732 aa9.52□□□□□ -0.89
CD44-208ENST00000428726 BCORQ6W2J9 1755 aa9.52□□□□□ -0.89
CD44-208ENST00000428726 STK36Q9NRP7 1315 aa9.51□□□□□ -0.89
CD44-208ENST00000428726 COL5A3P25940 1745 aaPredicted RBP9.51□□□□□ -0.89
CD44-208ENST00000428726 CCDC194A0A1B0GVG4 234 aa9.51□□□□□ -0.89
CD44-208ENST00000428726 RGL2O15211 777 aa9.51□□□□□ -0.89
CD44-208ENST00000428726 AKR1B1P15121 316 aa9.51□□□□□ -0.89
CD44-208ENST00000428726 NCBP1Q09161 790 aaKnown RBP9.51□□□□□ -0.89
CD44-208ENST00000428726 NPY5RQ15761 445 aa9.51□□□□□ -0.89
CD44-208ENST00000428726 SARM1Q6SZW1 724 aa9.51□□□□□ -0.89
CD44-208ENST00000428726 ZNF771Q7L3S4 317 aaPredicted RBP9.51□□□□□ -0.89
CD44-208ENST00000428726 COL23A1Q86Y22 540 aaPredicted RBP9.51□□□□□ -0.89
CD44-208ENST00000428726 WASF1Q92558 559 aa9.51□□□□□ -0.89
CD44-208ENST00000428726 PRIMPOLQ96LW4 560 aa9.51□□□□□ -0.89
CD44-208ENST00000428726 ZC3H12CQ9C0D7 883 aaKnown RBP9.51□□□□□ -0.89
CD44-208ENST00000428726 ZHX3Q9H4I2 956 aa9.51□□□□□ -0.89
CD44-208ENST00000428726 INTS13Q9NVM9 706 aa9.51□□□□□ -0.89
CD44-208ENST00000428726 TAB2Q9NYJ8 693 aa9.51□□□□□ -0.89
CD44-208ENST00000428726 ZNF831Q5JPB2 1677 aa9.51□□□□□ -0.89
CD44-208ENST00000428726 CLRN2A0PK11 232 aa9.51□□□□□ -0.89
CD44-208ENST00000428726 CUTAO60888 179 aa9.51□□□□□ -0.89
CD44-208ENST00000428726 TOP1P11387 765 aaKnown RBP9.51□□□□□ -0.89
CD44-208ENST00000428726 PTPREP23469 700 aa9.51□□□□□ -0.89
CD44-208ENST00000428726 CDC25BP30305 580 aa9.51□□□□□ -0.89
CD44-208ENST00000428726 UBXN2AP68543 259 aa9.51□□□□□ -0.89
CD44-208ENST00000428726 ST5P78524 1137 aa9.51□□□□□ -0.89
CD44-208ENST00000428726 CCDC96Q2M329 555 aa9.51□□□□□ -0.89
CD44-208ENST00000428726 C12orf60Q5U649 245 aa9.51□□□□□ -0.89
CD44-208ENST00000428726 ZNF804AQ7Z570 1209 aa9.51□□□□□ -0.89
CD44-208ENST00000428726 TMTC2Q8N394 836 aa9.51□□□□□ -0.89
CD44-208ENST00000428726 ANKRD2Q9GZV1 360 aa9.51□□□□□ -0.89
CD44-208ENST00000428726 ZNF215Q9UL58 517 aaPredicted RBP9.51□□□□□ -0.89
CD44-208ENST00000428726 CNTNAP5Q8WYK1 1306 aa9.51□□□□□ -0.89
CD44-208ENST00000428726 NID2Q14112 1375 aa9.51□□□□□ -0.89
CD44-208ENST00000428726 XBP1P17861 261 aa9.5□□□□□ -0.89
CD44-208ENST00000428726 TNNI2P48788 182 aa9.5□□□□□ -0.89
CD44-208ENST00000428726 MYL5Q02045 173 aa9.5□□□□□ -0.89
CD44-208ENST00000428726 USH1GQ495M9 461 aa9.5□□□□□ -0.89
CD44-208ENST00000428726 RILPL1Q5EBL4 403 aa9.5□□□□□ -0.89
CD44-208ENST00000428726 RBM26Q5T8P6 1007 aaKnown RBP9.5□□□□□ -0.89
CD44-208ENST00000428726 E4F1Q66K89 784 aaPredicted RBP9.5□□□□□ -0.89
CD44-208ENST00000428726 KRT27Q7Z3Y8 459 aa9.5□□□□□ -0.89
CD44-208ENST00000428726 CCDC112Q8NEF3 446 aa9.5□□□□□ -0.89
CD44-208ENST00000428726 MTRQ99707 1265 aa9.5□□□□□ -0.89
CD44-208ENST00000428726 USP40Q9NVE5 1235 aa9.5□□□□□ -0.89
CD44-208ENST00000428726 LTBP4Q8N2S1 1624 aa9.5□□□□□ -0.89
CD44-208ENST00000428726 RASA1P20936 1047 aa9.5□□□□□ -0.89
CD44-208ENST00000428726 LRRC15Q8TF66 581 aa9.5□□□□□ -0.89
CD44-208ENST00000428726 PAGE5Q96GU1 130 aa9.5□□□□□ -0.89
CD44-208ENST00000428726 PHF20Q9BVI0 1012 aa9.5□□□□□ -0.89
CD44-208ENST00000428726 HPSEQ9Y251 543 aa9.5□□□□□ -0.89
CD44-208ENST00000428726 XDHP47989 1333 aa9.5□□□□□ -0.89
CD44-208ENST00000428726 SOWAHDA6NJG2 315 aa9.5□□□□□ -0.89
CD44-208ENST00000428726 PPP6R2O75170 966 aa9.5□□□□□ -0.89
CD44-208ENST00000428726 PPARDQ03181 441 aa9.5□□□□□ -0.89
CD44-208ENST00000428726 LRRC41Q15345 812 aa9.5□□□□□ -0.89
CD44-208ENST00000428726 TBC1D10BQ4KMP7 808 aaPredicted RBP9.5□□□□□ -0.89
CD44-208ENST00000428726 CCDC178Q5BJE1 867 aa9.5□□□□□ -0.89
CD44-208ENST00000428726 TOGARAM2Q6ZUX3 1019 aa9.5□□□□□ -0.89
CD44-208ENST00000428726 CDAN1Q8IWY9 1227 aa9.5□□□□□ -0.89
CD44-208ENST00000428726 FNBP4Q8N3X1 1017 aaPredicted RBP9.5□□□□□ -0.89
CD44-208ENST00000428726 FZD1Q9UP38 647 aa9.5□□□□□ -0.89
CD44-208ENST00000428726 ZBTB12Q9Y330 459 aaPredicted RBP9.5□□□□□ -0.89
CD44-208ENST00000428726 LAMA2P24043 3122 aaKnown RBP9.49□□□□□ -0.89
CD44-208ENST00000428726 RNF225M0QZC1 329 aaPredicted RBP9.49□□□□□ -0.89
CD44-208ENST00000428726 MARCH6O60337 910 aa9.49□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms