RNA–Protein interactions for RNA: ENST00000428696.6

SGCE-204, Transcript of sarcoglycan epsilon, humanhuman

TSL 1 (best) BASIC

Gene SGCE, Length 1,409 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SGCE-204ENST00000428696 FBXO28Q9NVF7 368 aa17.09■□□□□ 0.33
SGCE-204ENST00000428696 HOXC10Q9NYD6 342 aa17.09■□□□□ 0.33
SGCE-204ENST00000428696 CTDP1Q9Y5B0 961 aaPredicted RBP17.09■□□□□ 0.33
SGCE-204ENST00000428696 SNX14Q9Y5W7 946 aa17.09■□□□□ 0.33
SGCE-204ENST00000428696 FRMPD2Q68DX3 1309 aaPredicted RBP17.08■□□□□ 0.33
SGCE-204ENST00000428696 PEX10O60683 326 aa17.08■□□□□ 0.32
SGCE-204ENST00000428696 FKTNO75072 461 aa17.08■□□□□ 0.32
SGCE-204ENST00000428696 SP3Q02447 781 aa17.08■□□□□ 0.32
SGCE-204ENST00000428696 WTAPQ15007 396 aa17.08■□□□□ 0.32
SGCE-204ENST00000428696 ADCK5Q3MIX3 580 aa17.08■□□□□ 0.32
SGCE-204ENST00000428696 RCSD1Q6JBY9 416 aa17.08■□□□□ 0.32
SGCE-204ENST00000428696 KCTD1Q719H9 257 aa17.08■□□□□ 0.32
SGCE-204ENST00000428696 GMCL1P1Q8NEA9 526 aa17.08■□□□□ 0.32
SGCE-204ENST00000428696 TCEANC2Q96MN5 208 aa17.08■□□□□ 0.32
SGCE-204ENST00000428696 THSD7BQ9C0I4 1608 aa17.07■□□□□ 0.32
SGCE-204ENST00000428696 TMEM232C9JQI7 657 aa17.07■□□□□ 0.32
SGCE-204ENST00000428696 CPA1P15085 419 aa17.07■□□□□ 0.32
SGCE-204ENST00000428696 PLS1Q14651 629 aa17.07■□□□□ 0.32
SGCE-204ENST00000428696 MB21D2Q8IYB1 491 aaPredicted RBP17.07■□□□□ 0.32
SGCE-204ENST00000428696 PNMA1Q8ND90 353 aa17.07■□□□□ 0.32
SGCE-204ENST00000428696 CWC22Q9HCG8 908 aaKnown RBP17.07■□□□□ 0.32
SGCE-204ENST00000428696 GPHNQ9NQX3 736 aaPredicted RBP17.07■□□□□ 0.32
SGCE-204ENST00000428696 NAP1L2Q9ULW6 460 aaPredicted RBP17.07■□□□□ 0.32
SGCE-204ENST00000428696 GCLCP48506 637 aaPredicted RBP17.06■□□□□ 0.32
SGCE-204ENST00000428696 ANTXR2P58335 489 aa17.06■□□□□ 0.32
SGCE-204ENST00000428696 COL9A3Q14050 684 aaPredicted RBP17.06■□□□□ 0.32
SGCE-204ENST00000428696 KIF22Q14807 665 aa17.06■□□□□ 0.32
SGCE-204ENST00000428696 C8orf34Q49A92 452 aa17.06■□□□□ 0.32
SGCE-204ENST00000428696 C17orf99Q6UX52 265 aa17.06■□□□□ 0.32
SGCE-204ENST00000428696 RASGRP2Q7LDG7 609 aa17.06■□□□□ 0.32
SGCE-204ENST00000428696 CD99L2Q8TCZ2 262 aa17.06■□□□□ 0.32
SGCE-204ENST00000428696 SYNPO2Q9UMS6 1093 aa17.06■□□□□ 0.32
SGCE-204ENST00000428696 CCDC69A6NI79 296 aa17.05■□□□□ 0.32
SGCE-204ENST00000428696 FMNL1O95466 1100 aaPredicted RBP17.05■□□□□ 0.32
SGCE-204ENST00000428696 GOLGA8HP0CJ92 632 aa17.05■□□□□ 0.32
SGCE-204ENST00000428696 CASTP20810 708 aaKnown RBP17.05■□□□□ 0.32
SGCE-204ENST00000428696 PSMA5P28066 241 aa17.05■□□□□ 0.32
SGCE-204ENST00000428696 WDR78Q5VTH9 848 aa17.05■□□□□ 0.32
SGCE-204ENST00000428696 BLOC1S2Q6QNY1 142 aa17.05■□□□□ 0.32
SGCE-204ENST00000428696 DHX32Q7L7V1 743 aaKnown RBP17.05■□□□□ 0.32
SGCE-204ENST00000428696 CATIPQ7Z7H3 387 aa17.05■□□□□ 0.32
SGCE-204ENST00000428696 GPRC5AQ8NFJ5 357 aa17.05■□□□□ 0.32
SGCE-204ENST00000428696 ATG4CQ96DT6 458 aa17.05■□□□□ 0.32
SGCE-204ENST00000428696 SENP2Q9HC62 589 aa17.05■□□□□ 0.32
SGCE-204ENST00000428696 FEM1BQ9UK73 627 aa17.05■□□□□ 0.32
SGCE-204ENST00000428696 HMGB1P09429 215 aaKnown RBP17.04■□□□□ 0.32
SGCE-204ENST00000428696 DSG3P32926 999 aa17.04■□□□□ 0.32
SGCE-204ENST00000428696 SLC16A2P36021 539 aa17.04■□□□□ 0.32
SGCE-204ENST00000428696 NOVP48745 357 aa17.04■□□□□ 0.32
SGCE-204ENST00000428696 TSGA10IPQ3SY00 556 aa17.04■□□□□ 0.32
SGCE-204ENST00000428696 IGDCC4Q8TDY8 1250 aa17.04■□□□□ 0.32
SGCE-204ENST00000428696 CHURC1Q8WUH1 139 aa17.04■□□□□ 0.32
SGCE-204ENST00000428696 NUP133Q8WUM0 1156 aa17.04■□□□□ 0.32
SGCE-204ENST00000428696 DCAF4Q8WV16 495 aa17.04■□□□□ 0.32
SGCE-204ENST00000428696 GMCL1Q96IK5 515 aa17.04■□□□□ 0.32
SGCE-204ENST00000428696 SLF1Q9BQI6 1058 aa17.04■□□□□ 0.32
SGCE-204ENST00000428696 CFHR5Q9BXR6 569 aa17.04■□□□□ 0.32
SGCE-204ENST00000428696 RBPJLQ9UBG7 517 aa17.04■□□□□ 0.32
SGCE-204ENST00000428696 LAMA4Q16363 1823 aa17.04■□□□□ 0.32
SGCE-204ENST00000428696 SPDYE16A6NNV3 312 aaPredicted RBP17.04■□□□□ 0.32
SGCE-204ENST00000428696 EPB41L2O43491 1005 aaKnown RBP17.04■□□□□ 0.32
SGCE-204ENST00000428696 DHX16O60231 1041 aaKnown RBP17.04■□□□□ 0.32
SGCE-204ENST00000428696 ZBED4O75132 1171 aa17.04■□□□□ 0.32
SGCE-204ENST00000428696 STAT2P52630 851 aa17.04■□□□□ 0.32
SGCE-204ENST00000428696 SNAP25P60880 206 aa17.04■□□□□ 0.32
SGCE-204ENST00000428696 SEC23AQ15436 765 aa17.04■□□□□ 0.32
SGCE-204ENST00000428696 TTBK2Q6IQ55 1244 aa17.04■□□□□ 0.32
SGCE-204ENST00000428696 PRPF38AQ8NAV1 312 aaKnown RBP17.04■□□□□ 0.32
SGCE-204ENST00000428696 ANKS1AQ92625 1134 aa17.04■□□□□ 0.32
SGCE-204ENST00000428696 ERO1AQ96HE7 468 aa17.04■□□□□ 0.32
SGCE-204ENST00000428696 TMEM87BQ96K49 555 aa17.04■□□□□ 0.32
SGCE-204ENST00000428696 TXNRD2Q9NNW7 524 aa17.04■□□□□ 0.32
SGCE-204ENST00000428696 PDHBP11177 359 aa17.03■□□□□ 0.32
SGCE-204ENST00000428696 PSMC4P43686 418 aa17.03■□□□□ 0.32
SGCE-204ENST00000428696 SYNE3Q6ZMZ3 975 aa17.03■□□□□ 0.32
SGCE-204ENST00000428696 RAB11FIP4Q86YS3 637 aa17.03■□□□□ 0.32
SGCE-204ENST00000428696 CPXCR1Q8N123 301 aa17.03■□□□□ 0.32
SGCE-204ENST00000428696 TMTC2Q8N394 836 aa17.03■□□□□ 0.32
SGCE-204ENST00000428696 GTF3C2Q8WUA4 911 aaPredicted RBP17.03■□□□□ 0.32
SGCE-204ENST00000428696 KCNB2Q92953 911 aa17.03■□□□□ 0.32
SGCE-204ENST00000428696 ARHGAP39Q9C0H5 1083 aa17.03■□□□□ 0.32
SGCE-204ENST00000428696 UPF2Q9HAU5 1272 aaKnown RBP17.03■□□□□ 0.32
SGCE-204ENST00000428696 LY9Q9HBG7 655 aa17.03■□□□□ 0.32
SGCE-204ENST00000428696 VAT1LQ9HCJ6 419 aa17.03■□□□□ 0.32
SGCE-204ENST00000428696 PPP1R9AQ9ULJ8 1098 aa17.03■□□□□ 0.32
SGCE-204ENST00000428696 PARP1P09874 1014 aaKnown RBP17.02■□□□□ 0.31
SGCE-204ENST00000428696 BCRP11274 1271 aa17.02■□□□□ 0.31
SGCE-204ENST00000428696 LACTBP83111 547 aaPredicted RBP17.02■□□□□ 0.31
SGCE-204ENST00000428696 ARHGEF6Q15052 776 aa17.02■□□□□ 0.31
SGCE-204ENST00000428696 Q3C1V9 767 aa17.02■□□□□ 0.31
SGCE-204ENST00000428696 FAM160B2Q86V87 743 aa17.02■□□□□ 0.31
SGCE-204ENST00000428696 CCDC144CPQ8IYA2 1237 aa17.02■□□□□ 0.31
SGCE-204ENST00000428696 MYL10Q9BUA6 226 aa17.02■□□□□ 0.31
SGCE-204ENST00000428696 UPF3BQ9BZI7 483 aaKnown RBP17.02■□□□□ 0.31
SGCE-204ENST00000428696 UBA5Q9GZZ9 404 aa17.02■□□□□ 0.31
SGCE-204ENST00000428696 BTBD7Q9P203 1132 aa17.02■□□□□ 0.31
SGCE-204ENST00000428696 RABGAP1Q9Y3P9 1069 aa17.02■□□□□ 0.31
SGCE-204ENST00000428696 CYP46A1Q9Y6A2 500 aa17.02■□□□□ 0.31
SGCE-204ENST00000428696 PTPRFP10586 1907 aa17.01■□□□□ 0.31
SGCE-204ENST00000428696 SH2B2O14492 632 aaPredicted RBP17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms