RNA–Protein interactions for RNA: ENST00000427947.7

USP40-204, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 794 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-204ENST00000427947 CD247P20963 164 aa6.35□□□□□ -1.39
USP40-204ENST00000427947 CD97P48960 835 aa6.35□□□□□ -1.39
USP40-204ENST00000427947 SERINC3Q13530 473 aa6.35□□□□□ -1.39
USP40-204ENST00000427947 TCEAL1Q15170 157 aa6.35□□□□□ -1.39
USP40-204ENST00000427947 AOC3Q16853 763 aa6.35□□□□□ -1.39
USP40-204ENST00000427947 ANKRD39Q53RE8 183 aa6.35□□□□□ -1.39
USP40-204ENST00000427947 NOL9Q5SY16 702 aaKnown RBP6.35□□□□□ -1.39
USP40-204ENST00000427947 ADAT2Q7Z6V5 191 aaKnown RBP6.35□□□□□ -1.39
USP40-204ENST00000427947 FGD4Q96M96 766 aa6.35□□□□□ -1.39
USP40-204ENST00000427947 KLHL25Q9H0H3 589 aa6.35□□□□□ -1.39
USP40-204ENST00000427947 OSBPL2Q9H1P3 480 aa6.35□□□□□ -1.39
USP40-204ENST00000427947 TRIT1Q9H3H1 467 aaKnown RBP6.35□□□□□ -1.39
USP40-204ENST00000427947 GP6Q9HCN6 339 aa6.35□□□□□ -1.39
USP40-204ENST00000427947 BSDC1Q9NW68 430 aaPredicted RBP6.35□□□□□ -1.39
USP40-204ENST00000427947 GPATCH2Q9NW75 528 aa6.35□□□□□ -1.39
USP40-204ENST00000427947 ZSWIM5Q9P217 1185 aa6.35□□□□□ -1.39
USP40-204ENST00000427947 ZNF451Q9Y4E5 1061 aa6.35□□□□□ -1.39
USP40-204ENST00000427947 SNX11Q9Y5W9 270 aa6.35□□□□□ -1.39
USP40-204ENST00000427947 ANKRD34BA5PLL1 514 aa6.34□□□□□ -1.39
USP40-204ENST00000427947 MEIS1O00470 390 aa6.34□□□□□ -1.39
USP40-204ENST00000427947 SIGLEC6O43699 453 aa6.34□□□□□ -1.39
USP40-204ENST00000427947 PRAMEF1O95521 474 aa6.34□□□□□ -1.39
USP40-204ENST00000427947 SRFP11831 508 aa6.34□□□□□ -1.39
USP40-204ENST00000427947 PRKCQQ04759 706 aa6.34□□□□□ -1.39
USP40-204ENST00000427947 ZMYM1Q5SVZ6 1142 aa6.34□□□□□ -1.39
USP40-204ENST00000427947 EEPD1Q7L9B9 569 aa6.34□□□□□ -1.39
USP40-204ENST00000427947 ADCY4Q8NFM4 1077 aa6.34□□□□□ -1.39
USP40-204ENST00000427947 BRF1Q92994 677 aa6.34□□□□□ -1.39
USP40-204ENST00000427947 UBE2FQ969M7 185 aa6.34□□□□□ -1.39
USP40-204ENST00000427947 GBP3Q9H0R5 595 aa6.34□□□□□ -1.39
USP40-204ENST00000427947 DUSP15Q9H1R2 295 aaPredicted RBP6.34□□□□□ -1.39
USP40-204ENST00000427947 ATP13A1Q9HD20 1204 aa6.34□□□□□ -1.39
USP40-204ENST00000427947 SEMA3GQ9NS98 782 aa6.34□□□□□ -1.39
USP40-204ENST00000427947 MINPP1Q9UNW1 487 aa6.34□□□□□ -1.39
USP40-204ENST00000427947 WASH4PA8MWX3 477 aa6.33□□□□□ -1.4
USP40-204ENST00000427947 SUSD5O60279 629 aa6.33□□□□□ -1.4
USP40-204ENST00000427947 NAT2P11245 290 aa6.33□□□□□ -1.4
USP40-204ENST00000427947 TPP2P29144 1249 aaPredicted RBP6.33□□□□□ -1.4
USP40-204ENST00000427947 CD96P40200 585 aa6.33□□□□□ -1.4
USP40-204ENST00000427947 ZNF445P59923 1031 aa6.33□□□□□ -1.4
USP40-204ENST00000427947 DPH6Q7L8W6 267 aa6.33□□□□□ -1.4
USP40-204ENST00000427947 THAP5Q7Z6K1 395 aa6.33□□□□□ -1.4
USP40-204ENST00000427947 TSPYL5Q86VY4 417 aaPredicted RBP6.33□□□□□ -1.4
USP40-204ENST00000427947 DTX1Q86Y01 620 aa6.33□□□□□ -1.4
USP40-204ENST00000427947 ASB11Q8WXH4 323 aa6.33□□□□□ -1.4
USP40-204ENST00000427947 MISP3Q96FF7 219 aa6.33□□□□□ -1.4
USP40-204ENST00000427947 SRPK1Q96SB4 655 aaKnown RBP6.33□□□□□ -1.4
USP40-204ENST00000427947 DSCC1Q9BVC3 393 aa6.33□□□□□ -1.4
USP40-204ENST00000427947 HDAC8Q9BY41 377 aa6.33□□□□□ -1.4
USP40-204ENST00000427947 ZSWIM4Q9H7M6 989 aa6.33□□□□□ -1.4
USP40-204ENST00000427947 CHST7Q9NS84 486 aa6.33□□□□□ -1.4
USP40-204ENST00000427947 PCMTD2Q9NV79 361 aa6.33□□□□□ -1.4
USP40-204ENST00000427947 WHRNQ9P202 907 aa6.33□□□□□ -1.4
USP40-204ENST00000427947 SUSD2Q9UGT4 822 aa6.33□□□□□ -1.4
USP40-204ENST00000427947 SUGT1Q9Y2Z0 365 aa6.33□□□□□ -1.4
USP40-204ENST00000427947 KIAA1324LA8MWY0 1029 aaPredicted RBP6.32□□□□□ -1.4
USP40-204ENST00000427947 PPM1BO75688 479 aa6.32□□□□□ -1.4
USP40-204ENST00000427947 SPINK2P20155 84 aa6.32□□□□□ -1.4
USP40-204ENST00000427947 ZNF143P52747 638 aaPredicted RBP6.32□□□□□ -1.4
USP40-204ENST00000427947 BNIP3Q12983 259 aa6.32□□□□□ -1.4
USP40-204ENST00000427947 BMS1Q14692 1282 aaKnown RBP6.32□□□□□ -1.4
USP40-204ENST00000427947 CCDC144BQ3MJ40 725 aa6.32□□□□□ -1.4
USP40-204ENST00000427947 ZNF574Q6ZN55 896 aaPredicted RBP6.32□□□□□ -1.4
USP40-204ENST00000427947 VSIG10LQ86VR7 867 aa6.32□□□□□ -1.4
USP40-204ENST00000427947 STK11IPQ8N1F8 1099 aa6.32□□□□□ -1.4
USP40-204ENST00000427947 FIBCD1Q8N539 461 aa6.32□□□□□ -1.4
USP40-204ENST00000427947 SYTL5Q8TDW5 730 aaPredicted RBP6.32□□□□□ -1.4
USP40-204ENST00000427947 BCL7CQ8WUZ0 217 aaPredicted RBP6.32□□□□□ -1.4
USP40-204ENST00000427947 PPP1R14AQ96A00 147 aa6.32□□□□□ -1.4
USP40-204ENST00000427947 DEPDC7Q96QD5 511 aa6.32□□□□□ -1.4
USP40-204ENST00000427947 APBA2Q99767 749 aa6.32□□□□□ -1.4
USP40-204ENST00000427947 NOL6Q9H6R4 1146 aaKnown RBP6.32□□□□□ -1.4
USP40-204ENST00000427947 SNTG2Q9NY99 539 aa6.32□□□□□ -1.4
USP40-204ENST00000427947 PRR13Q9NZ81 148 aa6.32□□□□□ -1.4
USP40-204ENST00000427947 APEX2Q9UBZ4 518 aa6.32□□□□□ -1.4
USP40-204ENST00000427947 DUSP13Q9UII6 198 aa6.32□□□□□ -1.4
USP40-204ENST00000427947 VAV3Q9UKW4 847 aa6.32□□□□□ -1.4
USP40-204ENST00000427947 ANGEL1Q9UNK9 670 aaKnown RBP6.32□□□□□ -1.4
USP40-204ENST00000427947 SLC5A6Q9Y289 635 aa6.32□□□□□ -1.4
USP40-204ENST00000427947 MSRB2Q9Y3D2 182 aa6.32□□□□□ -1.4
USP40-204ENST00000427947 SCO2A0A1W2PP80 73 aa6.31□□□□□ -1.4
USP40-204ENST00000427947 PDPK1O15530 556 aa6.31□□□□□ -1.4
USP40-204ENST00000427947 PRNPP04156 253 aa6.31□□□□□ -1.4
USP40-204ENST00000427947 LTKP29376 864 aa6.31□□□□□ -1.4
USP40-204ENST00000427947 IKZF1Q13422 519 aa6.31□□□□□ -1.4
USP40-204ENST00000427947 RASA3Q14644 834 aa6.31□□□□□ -1.4
USP40-204ENST00000427947 PPP2R5DQ14738 602 aa6.31□□□□□ -1.4
USP40-204ENST00000427947 SV2CQ496J9 727 aa6.31□□□□□ -1.4
USP40-204ENST00000427947 ZNF655Q8N720 491 aaPredicted RBP6.31□□□□□ -1.4
USP40-204ENST00000427947 ENOX1Q8TC92 643 aaKnown RBP6.31□□□□□ -1.4
USP40-204ENST00000427947 CCDC39Q9UFE4 941 aa6.31□□□□□ -1.4
USP40-204ENST00000427947 FHOD1Q9Y613 1164 aa6.31□□□□□ -1.4
USP40-204ENST00000427947 RASGRF1Q13972 1273 aa6.3□□□□□ -1.4
USP40-204ENST00000427947 NFE2L2Q16236 605 aa6.3□□□□□ -1.4
USP40-204ENST00000427947 SLC10A6Q3KNW5 377 aa6.3□□□□□ -1.4
USP40-204ENST00000427947 MTERF2Q49AM1 385 aa6.3□□□□□ -1.4
USP40-204ENST00000427947 CRTC3Q6UUV7 619 aa6.3□□□□□ -1.4
USP40-204ENST00000427947 TMPRSS7Q7RTY8 843 aa6.3□□□□□ -1.4
USP40-204ENST00000427947 CREG2Q8IUH2 290 aa6.3□□□□□ -1.4
USP40-204ENST00000427947 DAGLBQ8NCG7 672 aa6.3□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms