RNA–Protein interactions for RNA: ENST00000425436.7

SHOX2-202, Transcript of short stature homeobox 2, humanhuman

TSL 5 BASIC

Gene SHOX2, Length 1,513 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-202ENST00000425436 KLRC3Q07444 240 aa18.2■□□□□ 0.5
SHOX2-202ENST00000425436 TOB2Q14106 344 aaPredicted RBP18.2■□□□□ 0.5
SHOX2-202ENST00000425436 CCDC83Q8IWF9 413 aa18.2■□□□□ 0.5
SHOX2-202ENST00000425436 ENAHQ8N8S7 591 aaPredicted RBP18.2■□□□□ 0.5
SHOX2-202ENST00000425436 PROCA1Q8NCQ7 364 aaPredicted RBP18.2■□□□□ 0.5
SHOX2-202ENST00000425436 TCEANC2Q96MN5 208 aa18.2■□□□□ 0.5
SHOX2-202ENST00000425436 LRRC2Q9BYS8 371 aa18.2■□□□□ 0.5
SHOX2-202ENST00000425436 VCPKMTQ9H867 229 aa18.2■□□□□ 0.5
SHOX2-202ENST00000425436 GPHNQ9NQX3 736 aaPredicted RBP18.2■□□□□ 0.5
SHOX2-202ENST00000425436 RNF186Q9NXI6 227 aa18.2■□□□□ 0.5
SHOX2-202ENST00000425436 WDR19Q8NEZ3 1342 aa18.2■□□□□ 0.5
SHOX2-202ENST00000425436 VCAM1P19320 739 aa18.19■□□□□ 0.5
SHOX2-202ENST00000425436 MCM5P33992 734 aa18.19■□□□□ 0.5
SHOX2-202ENST00000425436 NT5C2P49902 561 aa18.19■□□□□ 0.5
SHOX2-202ENST00000425436 PKP1Q13835 747 aa18.19■□□□□ 0.5
SHOX2-202ENST00000425436 OTUD7BQ6GQQ9 843 aa18.19■□□□□ 0.5
SHOX2-202ENST00000425436 Q6ZUG5 572 aa18.19■□□□□ 0.5
SHOX2-202ENST00000425436 ANKRD23Q86SG2 305 aa18.19■□□□□ 0.5
SHOX2-202ENST00000425436 DGKHQ86XP1 1220 aa18.19■□□□□ 0.5
SHOX2-202ENST00000425436 JMYQ8N9B5 988 aa18.19■□□□□ 0.5
SHOX2-202ENST00000425436 NUP88Q99567 741 aaPredicted RBP18.19■□□□□ 0.5
SHOX2-202ENST00000425436 AGXT2Q9BYV1 514 aa18.19■□□□□ 0.5
SHOX2-202ENST00000425436 SENP2Q9HC62 589 aa18.19■□□□□ 0.5
SHOX2-202ENST00000425436 GOPCQ9HD26 462 aa18.19■□□□□ 0.5
SHOX2-202ENST00000425436 AGTPBP1Q9UPW5 1226 aa18.19■□□□□ 0.5
SHOX2-202ENST00000425436 LOC285556D6RIA3 1793 aa18.19■□□□□ 0.5
SHOX2-202ENST00000425436 STX6O43752 255 aa18.18■□□□□ 0.5
SHOX2-202ENST00000425436 NDUFB10O96000 172 aa18.18■□□□□ 0.5
SHOX2-202ENST00000425436 TOP1P11387 765 aaKnown RBP18.18■□□□□ 0.5
SHOX2-202ENST00000425436 SEC23AQ15436 765 aa18.18■□□□□ 0.5
SHOX2-202ENST00000425436 PPP4R3BQ5MIZ7 849 aa18.18■□□□□ 0.5
SHOX2-202ENST00000425436 RASGRP2Q7LDG7 609 aa18.18■□□□□ 0.5
SHOX2-202ENST00000425436 IGDCC4Q8TDY8 1250 aa18.18■□□□□ 0.5
SHOX2-202ENST00000425436 C12orf42Q96LP6 360 aa18.18■□□□□ 0.5
SHOX2-202ENST00000425436 LLPHQ9BRT6 129 aaKnown RBP18.18■□□□□ 0.5
SHOX2-202ENST00000425436 RPAP3Q9H6T3 665 aaPredicted RBP18.18■□□□□ 0.5
SHOX2-202ENST00000425436 WBP1LQ9NX94 342 aa18.18■□□□□ 0.5
SHOX2-202ENST00000425436 TBC1D8O95759 1140 aa18.18■□□□□ 0.5
SHOX2-202ENST00000425436 CYP2C8P10632 490 aa18.18■□□□□ 0.5
SHOX2-202ENST00000425436 CCDC178Q5BJE1 867 aa18.18■□□□□ 0.5
SHOX2-202ENST00000425436 TMEM67Q5HYA8 995 aa18.18■□□□□ 0.5
SHOX2-202ENST00000425436 SLFN13Q68D06 897 aa18.18■□□□□ 0.5
SHOX2-202ENST00000425436 MCTP1Q6DN14 999 aa18.18■□□□□ 0.5
SHOX2-202ENST00000425436 R3HDMLQ9H3Y0 253 aa18.18■□□□□ 0.5
SHOX2-202ENST00000425436 TSKSQ9UJT2 592 aa18.18■□□□□ 0.5
SHOX2-202ENST00000425436 ISY1Q9ULR0 285 aaKnown RBP18.18■□□□□ 0.5
SHOX2-202ENST00000425436 ERICH2A1L162 156 aa18.17■□□□□ 0.5
SHOX2-202ENST00000425436 ZSCAN22P10073 491 aaPredicted RBP18.17■□□□□ 0.5
SHOX2-202ENST00000425436 GJB2P29033 226 aa18.17■□□□□ 0.5
SHOX2-202ENST00000425436 WTAPQ15007 396 aa18.17■□□□□ 0.5
SHOX2-202ENST00000425436 TAF1CQ15572 869 aaPredicted RBP18.17■□□□□ 0.5
SHOX2-202ENST00000425436 KLHL40Q2TBA0 621 aa18.17■□□□□ 0.5
SHOX2-202ENST00000425436 FAM83BQ5T0W9 1011 aa18.17■□□□□ 0.5
SHOX2-202ENST00000425436 IFIT1BQ5T764 474 aaKnown RBP18.17■□□□□ 0.5
SHOX2-202ENST00000425436 GMCL1P1Q8NEA9 526 aa18.17■□□□□ 0.5
SHOX2-202ENST00000425436 ANKS1AQ92625 1134 aa18.17■□□□□ 0.5
SHOX2-202ENST00000425436 LPAR1Q92633 364 aa18.17■□□□□ 0.5
SHOX2-202ENST00000425436 BEGAINQ9BUH8 593 aa18.17■□□□□ 0.5
SHOX2-202ENST00000425436 KAT14Q9H8E8 782 aa18.17■□□□□ 0.5
SHOX2-202ENST00000425436 LARGE1O95461 756 aa18.16■□□□□ 0.5
SHOX2-202ENST00000425436 SYT1P21579 422 aa18.16■□□□□ 0.5
SHOX2-202ENST00000425436 SART3Q15020 963 aaKnown RBP18.16■□□□□ 0.5
SHOX2-202ENST00000425436 SAMD1Q6SPF0 538 aaPredicted RBP18.16■□□□□ 0.5
SHOX2-202ENST00000425436 ZNF274Q96GC6 653 aaPredicted RBP18.16■□□□□ 0.5
SHOX2-202ENST00000425436 LARP6Q9BRS8 491 aaKnown RBP18.16■□□□□ 0.5
SHOX2-202ENST00000425436 TANGO6Q9C0B7 1094 aa18.16■□□□□ 0.5
SHOX2-202ENST00000425436 ASCC2Q9H1I8 757 aaPredicted RBP18.16■□□□□ 0.5
SHOX2-202ENST00000425436 KIF3AQ9Y496 699 aa18.16■□□□□ 0.5
SHOX2-202ENST00000425436 USP17L15C9J2P7 530 aa18.15■□□□□ 0.5
SHOX2-202ENST00000425436 USP17L13C9JLJ4 530 aa18.15■□□□□ 0.5
SHOX2-202ENST00000425436 USP17L11C9JVI0 530 aa18.15■□□□□ 0.5
SHOX2-202ENST00000425436 USP17L18D6R9N7 530 aa18.15■□□□□ 0.5
SHOX2-202ENST00000425436 USP17L22D6RA61 530 aa18.15■□□□□ 0.5
SHOX2-202ENST00000425436 USP17L17D6RBQ6 530 aa18.15■□□□□ 0.5
SHOX2-202ENST00000425436 USP17L19D6RCP7 530 aa18.15■□□□□ 0.5
SHOX2-202ENST00000425436 USP17L20D6RJB6 530 aa18.15■□□□□ 0.5
SHOX2-202ENST00000425436 ALDH1A1P00352 501 aa18.15■□□□□ 0.5
SHOX2-202ENST00000425436 OSBPP22059 807 aa18.15■□□□□ 0.5
SHOX2-202ENST00000425436 HOXA7P31268 230 aaPredicted RBP18.15■□□□□ 0.5
SHOX2-202ENST00000425436 USP17L24Q0WX57 530 aa18.15■□□□□ 0.5
SHOX2-202ENST00000425436 CRHR2Q13324 411 aa18.15■□□□□ 0.5
SHOX2-202ENST00000425436 CATSPERGQ6ZRH7 1159 aa18.15■□□□□ 0.5
SHOX2-202ENST00000425436 PNMA1Q8ND90 353 aa18.15■□□□□ 0.5
SHOX2-202ENST00000425436 GTF3C6Q969F1 213 aa18.15■□□□□ 0.5
SHOX2-202ENST00000425436 P2RX7Q99572 595 aaKnown RBP18.15■□□□□ 0.5
SHOX2-202ENST00000425436 LY9Q9HBG7 655 aa18.15■□□□□ 0.5
SHOX2-202ENST00000425436 SH2B2O14492 632 aaPredicted RBP18.14■□□□□ 0.49
SHOX2-202ENST00000425436 WDR46O15213 610 aaKnown RBP18.14■□□□□ 0.49
SHOX2-202ENST00000425436 PFKFB2O60825 505 aa18.14■□□□□ 0.49
SHOX2-202ENST00000425436 EVCP57679 992 aa18.14■□□□□ 0.49
SHOX2-202ENST00000425436 PABPC4Q13310 644 aaKnown RBP eCLIP18.14■□□□□ 0.49
SHOX2-202ENST00000425436 CSPP1Q1MSJ5 1256 aa18.14■□□□□ 0.49
SHOX2-202ENST00000425436 KCTD1Q719H9 257 aa18.14■□□□□ 0.49
SHOX2-202ENST00000425436 BRF1Q92994 677 aa18.14■□□□□ 0.49
SHOX2-202ENST00000425436 TMEM87BQ96K49 555 aa18.14■□□□□ 0.49
SHOX2-202ENST00000425436 LMBRD1Q9NUN5 540 aa18.14■□□□□ 0.49
SHOX2-202ENST00000425436 SYNPO2Q9UMS6 1093 aa18.14■□□□□ 0.49
SHOX2-202ENST00000425436 SLC45A1Q9Y2W3 748 aa18.14■□□□□ 0.49
SHOX2-202ENST00000425436 DDX49Q9Y6V7 483 aaKnown RBP18.14■□□□□ 0.49
SHOX2-202ENST00000425436 CA12O43570 354 aa18.13■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms