RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 MAML3Q96JK9 1138 aa15.59■□□□□ 0.09
LINC00339-202ENST00000416769 BOLA2Q9H3K6 86 aa15.59■□□□□ 0.09
LINC00339-202ENST00000416769 PLXNA1Q9UIW2 1896 aa15.59■□□□□ 0.09
LINC00339-202ENST00000416769 SEPT4O43236 478 aa15.58■□□□□ 0.08
LINC00339-202ENST00000416769 SNX17Q15036 470 aa15.58■□□□□ 0.08
LINC00339-202ENST00000416769 C20orf194Q5TEA3 1177 aa15.58■□□□□ 0.08
LINC00339-202ENST00000416769 ERC1Q8IUD2 1116 aa15.58■□□□□ 0.08
LINC00339-202ENST00000416769 SHCBP1Q8NEM2 672 aa15.58■□□□□ 0.08
LINC00339-202ENST00000416769 CDX2Q99626 313 aaPredicted RBP15.58■□□□□ 0.08
LINC00339-202ENST00000416769 TTYH1Q9H313 450 aaPredicted RBP15.58■□□□□ 0.08
LINC00339-202ENST00000416769 VCPKMTQ9H867 229 aa15.58■□□□□ 0.08
LINC00339-202ENST00000416769 HOXC10Q9NYD6 342 aa15.58■□□□□ 0.08
LINC00339-202ENST00000416769 KBTBD13C9JR72 458 aa15.57■□□□□ 0.08
LINC00339-202ENST00000416769 PGK1P00558 417 aa15.57■□□□□ 0.08
LINC00339-202ENST00000416769 ADD2P35612 726 aa15.57■□□□□ 0.08
LINC00339-202ENST00000416769 IRX5P78411 483 aaPredicted RBP15.57■□□□□ 0.08
LINC00339-202ENST00000416769 TLE2Q04725 743 aa15.57■□□□□ 0.08
LINC00339-202ENST00000416769 NUP88Q99567 741 aaPredicted RBP15.57■□□□□ 0.08
LINC00339-202ENST00000416769 TMX2Q9Y320 296 aa15.57■□□□□ 0.08
LINC00339-202ENST00000416769 MYH7P12883 1935 aa15.56■□□□□ 0.08
LINC00339-202ENST00000416769 USP17L12C9JPN9 530 aa15.56■□□□□ 0.08
LINC00339-202ENST00000416769 USP17L21D6R901 530 aa15.56■□□□□ 0.08
LINC00339-202ENST00000416769 EEF2P13639 858 aaKnown RBP15.56■□□□□ 0.08
LINC00339-202ENST00000416769 CDK8P49336 464 aa15.56■□□□□ 0.08
LINC00339-202ENST00000416769 TTF1Q15361 905 aaPredicted RBP15.56■□□□□ 0.08
LINC00339-202ENST00000416769 ZNF697Q5TEC3 545 aa15.56■□□□□ 0.08
LINC00339-202ENST00000416769 FAM109BQ6ICB4 259 aaPredicted RBP15.56■□□□□ 0.08
LINC00339-202ENST00000416769 STK11IPQ8N1F8 1099 aa15.56■□□□□ 0.08
LINC00339-202ENST00000416769 ARRDC4Q8NCT1 418 aa15.56■□□□□ 0.08
LINC00339-202ENST00000416769 MYLIPQ8WY64 445 aa15.56■□□□□ 0.08
LINC00339-202ENST00000416769 GNL3Q9BVP2 549 aaKnown RBP eCLIP15.56■□□□□ 0.08
LINC00339-202ENST00000416769 PRKAG2Q9UGJ0 569 aa15.56■□□□□ 0.08
LINC00339-202ENST00000416769 TTC28Q96AY4 2481 aa15.55■□□□□ 0.08
LINC00339-202ENST00000416769 STRNO43815 780 aa15.55■□□□□ 0.08
LINC00339-202ENST00000416769 FAM83BQ5T0W9 1011 aa15.55■□□□□ 0.08
LINC00339-202ENST00000416769 C12orf60Q5U649 245 aa15.55■□□□□ 0.08
LINC00339-202ENST00000416769 REPS2Q8NFH8 660 aa15.55■□□□□ 0.08
LINC00339-202ENST00000416769 SEMA6BQ9H3T3 888 aa15.55■□□□□ 0.08
LINC00339-202ENST00000416769 CHMP4BQ9H444 224 aaKnown RBP15.55■□□□□ 0.08
LINC00339-202ENST00000416769 MROH8Q9H579 483 aa15.55■□□□□ 0.08
LINC00339-202ENST00000416769 PAG1Q9NWQ8 432 aa15.55■□□□□ 0.08
LINC00339-202ENST00000416769 COG6Q9Y2V7 657 aa15.55■□□□□ 0.08
LINC00339-202ENST00000416769 MCM3APO60318 1980 aa15.55■□□□□ 0.08
LINC00339-202ENST00000416769 GREB1LQ9C091 1923 aaPredicted RBP15.55■□□□□ 0.08
LINC00339-202ENST00000416769 RAD21O60216 631 aa15.54■□□□□ 0.08
LINC00339-202ENST00000416769 IFIT2P09913 472 aaKnown RBP15.54■□□□□ 0.08
LINC00339-202ENST00000416769 CLASRPQ8N2M8 674 aaKnown RBP15.54■□□□□ 0.08
LINC00339-202ENST00000416769 PPIL4Q8WUA2 492 aaKnown RBP eCLIP15.54■□□□□ 0.08
LINC00339-202ENST00000416769 KIF1BPQ96EK5 621 aa15.54■□□□□ 0.08
LINC00339-202ENST00000416769 MMP19Q99542 508 aa15.54■□□□□ 0.08
LINC00339-202ENST00000416769 PUS7LQ9H0K6 701 aaKnown RBP15.54■□□□□ 0.08
LINC00339-202ENST00000416769 ARHGEF10LQ9HCE6 1279 aa15.54■□□□□ 0.08
LINC00339-202ENST00000416769 XPNPEP3Q9NQH7 507 aa15.54■□□□□ 0.08
LINC00339-202ENST00000416769 SWAP70Q9UH65 585 aa15.54■□□□□ 0.08
LINC00339-202ENST00000416769 DDX19BQ9UMR2 479 aa15.54■□□□□ 0.08
LINC00339-202ENST00000416769 ADAMTS5Q9UNA0 930 aa15.54■□□□□ 0.08
LINC00339-202ENST00000416769 MYADML2A6NDP7 307 aa15.53■□□□□ 0.08
LINC00339-202ENST00000416769 WDR46O15213 610 aaKnown RBP15.53■□□□□ 0.08
LINC00339-202ENST00000416769 SMARCA5O60264 1052 aaPredicted RBP15.53■□□□□ 0.08
LINC00339-202ENST00000416769 PQBP1O60828 265 aaKnown RBP15.53■□□□□ 0.08
LINC00339-202ENST00000416769 ZNF865P0CJ78 1059 aaPredicted RBP15.53■□□□□ 0.08
LINC00339-202ENST00000416769 FCER1AP12319 257 aa15.53■□□□□ 0.08
LINC00339-202ENST00000416769 ZNF792Q3KQV3 632 aa15.53■□□□□ 0.08
LINC00339-202ENST00000416769 CTR9Q6PD62 1173 aa15.53■□□□□ 0.08
LINC00339-202ENST00000416769 C16orf86Q6ZW13 317 aa15.53■□□□□ 0.08
LINC00339-202ENST00000416769 ABRAQ8N0Z2 381 aa15.53■□□□□ 0.08
LINC00339-202ENST00000416769 MB21D1Q8N884 522 aa15.53■□□□□ 0.08
LINC00339-202ENST00000416769 ZNF214Q9UL59 606 aaPredicted RBP15.53■□□□□ 0.08
LINC00339-202ENST00000416769 PHF24Q9UPV7 400 aa15.53■□□□□ 0.08
LINC00339-202ENST00000416769 RIPK3Q9Y572 518 aa15.53■□□□□ 0.08
LINC00339-202ENST00000416769 SPTBN5Q9NRC6 3674 aaKnown RBP15.53■□□□□ 0.08
LINC00339-202ENST00000416769 MYO9BQ13459 2157 aa15.52■□□□□ 0.08
LINC00339-202ENST00000416769 VWA5AO00534 786 aa15.52■□□□□ 0.08
LINC00339-202ENST00000416769 ADCY6O43306 1168 aa15.52■□□□□ 0.08
LINC00339-202ENST00000416769 TMED8Q6PL24 325 aaPredicted RBP15.52■□□□□ 0.08
LINC00339-202ENST00000416769 RIOX2Q8IUF8 465 aa15.52■□□□□ 0.08
LINC00339-202ENST00000416769 MAFAQ8NHW3 353 aaPredicted RBP15.52■□□□□ 0.08
LINC00339-202ENST00000416769 TINF2Q9BSI4 451 aa15.52■□□□□ 0.08
LINC00339-202ENST00000416769 PPP1R9AQ9ULJ8 1098 aa15.52■□□□□ 0.08
LINC00339-202ENST00000416769 SLC4A4Q9Y6R1 1079 aa15.52■□□□□ 0.08
LINC00339-202ENST00000416769 A0A1W2PQ45 241 aaPredicted RBP15.51■□□□□ 0.07
LINC00339-202ENST00000416769 A0A1W2PQY0 241 aa15.51■□□□□ 0.07
LINC00339-202ENST00000416769 ADAMTS4O75173 837 aa15.51■□□□□ 0.07
LINC00339-202ENST00000416769 STAT3P40763 770 aa15.51■□□□□ 0.07
LINC00339-202ENST00000416769 CACNB1Q02641 598 aaPredicted RBP15.51■□□□□ 0.07
LINC00339-202ENST00000416769 HSP90AB4PQ58FF6 505 aa15.51■□□□□ 0.07
LINC00339-202ENST00000416769 TSHZ3Q63HK5 1081 aa15.51■□□□□ 0.07
LINC00339-202ENST00000416769 CRBNQ96SW2 442 aa15.51■□□□□ 0.07
LINC00339-202ENST00000416769 HAUS7Q99871 368 aa15.51■□□□□ 0.07
LINC00339-202ENST00000416769 ZBTB40Q9NUA8 1239 aa15.51■□□□□ 0.07
LINC00339-202ENST00000416769 SNAI1O95863 264 aaPredicted RBP15.5■□□□□ 0.07
LINC00339-202ENST00000416769 CLTBP09497 229 aa15.5■□□□□ 0.07
LINC00339-202ENST00000416769 RARBP10826 455 aa15.5■□□□□ 0.07
LINC00339-202ENST00000416769 ATP5JP18859 108 aa15.5■□□□□ 0.07
LINC00339-202ENST00000416769 PTGS1P23219 599 aa15.5■□□□□ 0.07
LINC00339-202ENST00000416769 HOXD11P31277 338 aaPredicted RBP15.5■□□□□ 0.07
LINC00339-202ENST00000416769 SLC4A3P48751 1232 aa15.5■□□□□ 0.07
LINC00339-202ENST00000416769 AAMPQ13685 434 aa15.5■□□□□ 0.07
LINC00339-202ENST00000416769 USP38Q8NB14 1042 aa15.5■□□□□ 0.07
LINC00339-202ENST00000416769 FGD4Q96M96 766 aa15.5■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms