RNA–Protein interactions for RNA: ENST00000412568.6

PTPRF-204, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 4,154 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-204ENST00000412568 FERMT2Q96AC1 680 aa12.56□□□□□ -0.4
PTPRF-204ENST00000412568 EPSTI1Q96J88 318 aa12.56□□□□□ -0.4
PTPRF-204ENST00000412568 TCHPQ9BT92 498 aa12.56□□□□□ -0.4
PTPRF-204ENST00000412568 SYNRGQ9UMZ2 1314 aa12.56□□□□□ -0.4
PTPRF-204ENST00000412568 WTIPA6NIX2 430 aaPredicted RBP12.55□□□□□ -0.4
PTPRF-204ENST00000412568 MLKLQ8NB16 471 aa12.55□□□□□ -0.4
PTPRF-204ENST00000412568 CNKSR2Q8WXI2 1034 aa12.55□□□□□ -0.4
PTPRF-204ENST00000412568 MXD3Q9BW11 206 aa12.55□□□□□ -0.4
PTPRF-204ENST00000412568 PUF60Q9UHX1 559 aaKnown RBP12.55□□□□□ -0.4
PTPRF-204ENST00000412568 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12.55□□□□□ -0.4
PTPRF-204ENST00000412568 UTYO14607 1347 aa12.55□□□□□ -0.4
PTPRF-204ENST00000412568 CYP4A11Q02928 519 aa12.55□□□□□ -0.4
PTPRF-204ENST00000412568 GOLGA8FQ08AF8 430 aa12.55□□□□□ -0.4
PTPRF-204ENST00000412568 GOLGA8DPQ0D2H9 430 aa12.55□□□□□ -0.4
PTPRF-204ENST00000412568 PTF1AQ7RTS3 328 aa12.55□□□□□ -0.4
PTPRF-204ENST00000412568 BAG1Q99933 345 aaPredicted RBP12.55□□□□□ -0.4
PTPRF-204ENST00000412568 CALCOCO1Q9P1Z2 691 aa12.55□□□□□ -0.4
PTPRF-204ENST00000412568 LUC7L2Q9Y383 392 aaKnown RBP12.55□□□□□ -0.4
PTPRF-204ENST00000412568 JCADQ9P266 1359 aa12.55□□□□□ -0.4
PTPRF-204ENST00000412568 MMP1P03956 469 aa12.55□□□□□ -0.4
PTPRF-204ENST00000412568 GUCY1A2P33402 732 aa12.55□□□□□ -0.4
PTPRF-204ENST00000412568 CERS3Q8IU89 383 aa12.55□□□□□ -0.4
PTPRF-204ENST00000412568 MYRIPQ8NFW9 859 aa12.55□□□□□ -0.4
PTPRF-204ENST00000412568 CERKQ8TCT0 537 aa12.55□□□□□ -0.4
PTPRF-204ENST00000412568 NOC4LQ9BVI4 516 aaKnown RBP12.55□□□□□ -0.4
PTPRF-204ENST00000412568 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.55□□□□□ -0.41e-6■■■■■ 54.3
PTPRF-204ENST00000412568 USP42Q9H9J4 1324 aaKnown RBP12.55□□□□□ -0.4
PTPRF-204ENST00000412568 FER1L4A9Z1Z3 1794 aa12.55□□□□□ -0.4
PTPRF-204ENST00000412568 ARHGAP23Q9P227 1491 aa12.55□□□□□ -0.4
PTPRF-204ENST00000412568 PAK1Q13153 545 aa12.55□□□□□ -0.4
PTPRF-204ENST00000412568 PPP4R3AQ6IN85 833 aa12.55□□□□□ -0.4
PTPRF-204ENST00000412568 PRR5LQ6MZQ0 368 aa12.55□□□□□ -0.4
PTPRF-204ENST00000412568 VPS36Q86VN1 386 aa12.55□□□□□ -0.4
PTPRF-204ENST00000412568 TDRD3Q9H7E2 651 aaKnown RBP12.55□□□□□ -0.4
PTPRF-204ENST00000412568 LY9Q9HBG7 655 aa12.55□□□□□ -0.4
PTPRF-204ENST00000412568 PICK1Q9NRD5 415 aa12.55□□□□□ -0.4
PTPRF-204ENST00000412568 ADGRB2O60241 1585 aa12.54□□□□□ -0.4
PTPRF-204ENST00000412568 DDAH1O94760 285 aa12.54□□□□□ -0.4
PTPRF-204ENST00000412568 ABCB5Q2M3G0 1257 aa12.54□□□□□ -0.4
PTPRF-204ENST00000412568 CTR9Q6PD62 1173 aa12.54□□□□□ -0.4
PTPRF-204ENST00000412568 SUPT20HQ8NEM7 779 aa12.54□□□□□ -0.4
PTPRF-204ENST00000412568 CCDC42Q96M95 316 aa12.54□□□□□ -0.4
PTPRF-204ENST00000412568 SLC4A9Q96Q91 983 aa12.54□□□□□ -0.4
PTPRF-204ENST00000412568 PLA2G12BQ9BX93 195 aa12.54□□□□□ -0.4
PTPRF-204ENST00000412568 SCAF8Q9UPN6 1271 aaKnown RBP12.54□□□□□ -0.4
PTPRF-204ENST00000412568 TRAF1Q13077 416 aa12.54□□□□□ -0.4
PTPRF-204ENST00000412568 CLEC10AQ8IUN9 316 aa12.54□□□□□ -0.4
PTPRF-204ENST00000412568 ALAS1P13196 640 aa12.54□□□□□ -0.4
PTPRF-204ENST00000412568 NELFBQ8WX92 580 aa12.54□□□□□ -0.4
PTPRF-204ENST00000412568 SRRTQ9BXP5 876 aaKnown RBP12.54□□□□□ -0.4
PTPRF-204ENST00000412568 POLR3EQ9NVU0 708 aa12.54□□□□□ -0.4
PTPRF-204ENST00000412568 CCDC175P0C221 793 aa12.53□□□□□ -0.4
PTPRF-204ENST00000412568 HARSP12081 509 aaKnown RBP12.53□□□□□ -0.4
PTPRF-204ENST00000412568 ZNF569Q5MCW4 686 aa12.53□□□□□ -0.4
PTPRF-204ENST00000412568 ARHGAP27Q6ZUM4 889 aa12.53□□□□□ -0.4
PTPRF-204ENST00000412568 NEK8Q86SG6 692 aa12.53□□□□□ -0.4
PTPRF-204ENST00000412568 FAM212AQ96EL1 285 aa12.53□□□□□ -0.4
PTPRF-204ENST00000412568 CAPZA3Q96KX2 299 aa12.53□□□□□ -0.4
PTPRF-204ENST00000412568 LZTS2Q9BRK4 669 aa12.53□□□□□ -0.4
PTPRF-204ENST00000412568 SLIT1O75093 1534 aa12.53□□□□□ -0.4
PTPRF-204ENST00000412568 SALL3Q9BXA9 1300 aa12.53□□□□□ -0.4
PTPRF-204ENST00000412568 AKR1B15C9JRZ8 316 aaPredicted RBP12.53□□□□□ -0.4
PTPRF-204ENST00000412568 NPR1P16066 1061 aa12.53□□□□□ -0.4
PTPRF-204ENST00000412568 CETN1Q12798 172 aa12.53□□□□□ -0.4
PTPRF-204ENST00000412568 RAPGEF1Q13905 1077 aa12.53□□□□□ -0.4
PTPRF-204ENST00000412568 TPH2Q8IWU9 490 aa12.53□□□□□ -0.4
PTPRF-204ENST00000412568 RDH13Q8NBN7 331 aa12.53□□□□□ -0.4
PTPRF-204ENST00000412568 STAG1Q8WVM7 1258 aa12.53□□□□□ -0.4
PTPRF-204ENST00000412568 PCDHA12Q9UN75 941 aa12.53□□□□□ -0.4
PTPRF-204ENST00000412568 UBE2Q2LH0YL09 131 aa12.53□□□□□ -0.4
PTPRF-204ENST00000412568 UBE2SQ16763 222 aa12.53□□□□□ -0.4
PTPRF-204ENST00000412568 AOC3Q16853 763 aa12.53□□□□□ -0.4
PTPRF-204ENST00000412568 STXBP4Q6ZWJ1 553 aa12.53□□□□□ -0.4
PTPRF-204ENST00000412568 A0A1W2PQ27 194 aa12.52□□□□□ -0.4
PTPRF-204ENST00000412568 A0A1W2PQ64 194 aa12.52□□□□□ -0.4
PTPRF-204ENST00000412568 A0A1W2PQD8 194 aa12.52□□□□□ -0.4
PTPRF-204ENST00000412568 KIAA0754O94854 1291 aa12.52□□□□□ -0.4
PTPRF-204ENST00000412568 KRT9P35527 623 aa12.52□□□□□ -0.4
PTPRF-204ENST00000412568 HS2ST1Q7LGA3 356 aa12.52□□□□□ -0.4
PTPRF-204ENST00000412568 CCDC65Q8IXS2 484 aa12.52□□□□□ -0.4
PTPRF-204ENST00000412568 TDRD7Q8NHU6 1098 aaKnown RBP12.52□□□□□ -0.4
PTPRF-204ENST00000412568 SLC39A2Q9NP94 309 aa12.52□□□□□ -0.4
PTPRF-204ENST00000412568 BICDL2A1A5D9 508 aa12.52□□□□□ -0.41
PTPRF-204ENST00000412568 PAFAH1B1P43034 410 aa12.52□□□□□ -0.41
PTPRF-204ENST00000412568 EXOSC10Q01780 885 aaKnown RBP12.52□□□□□ -0.41
PTPRF-204ENST00000412568 CACNB1Q02641 598 aaPredicted RBP12.52□□□□□ -0.41
PTPRF-204ENST00000412568 C3orf67Q6ZVT6 689 aa12.52□□□□□ -0.41
PTPRF-204ENST00000412568 TXNRD3Q86VQ6 643 aa12.52□□□□□ -0.41
PTPRF-204ENST00000412568 TBCKQ8TEA7 893 aa12.52□□□□□ -0.41
PTPRF-204ENST00000412568 NSUN4Q96CB9 384 aaKnown RBP12.52□□□□□ -0.41
PTPRF-204ENST00000412568 FOXP1Q9H334 677 aaPredicted RBP12.52□□□□□ -0.41
PTPRF-204ENST00000412568 CYLC1P35663 651 aaPredicted RBP12.52□□□□□ -0.41
PTPRF-204ENST00000412568 TXLNBQ8N3L3 684 aa12.52□□□□□ -0.41
PTPRF-204ENST00000412568 SH2D4AQ9H788 454 aa12.52□□□□□ -0.41
PTPRF-204ENST00000412568 EPB41L4AQ9HCS5 686 aaPredicted RBP12.52□□□□□ -0.41
PTPRF-204ENST00000412568 OR52Z1P0C646 297 aa12.51□□□□□ -0.41
PTPRF-204ENST00000412568 TBC1D10BQ4KMP7 808 aaPredicted RBP12.51□□□□□ -0.41
PTPRF-204ENST00000412568 CACTINQ8WUQ7 758 aaKnown RBP12.51□□□□□ -0.41
PTPRF-204ENST00000412568 MASTLQ96GX5 879 aa12.51□□□□□ -0.41
PTPRF-204ENST00000412568 TMEM47Q9BQJ4 181 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms