RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 ZSCAN29Q8IWY8 852 aaPredicted RBP14.13□□□□□ -0.15
COL6A3-206ENST00000409809 CDKL2Q92772 493 aa14.13□□□□□ -0.15
COL6A3-206ENST00000409809 PPWD1Q96BP3 646 aaKnown RBP14.13□□□□□ -0.15
COL6A3-206ENST00000409809 ZNF653Q96CK0 615 aa14.13□□□□□ -0.15
COL6A3-206ENST00000409809 SPC25Q9HBM1 224 aa14.13□□□□□ -0.15
COL6A3-206ENST00000409809 CRYMQ14894 314 aa14.13□□□□□ -0.15
COL6A3-206ENST00000409809 PPP1R13BQ96KQ4 1090 aa14.13□□□□□ -0.15
COL6A3-206ENST00000409809 HELLSQ9NRZ9 838 aa14.13□□□□□ -0.15
COL6A3-206ENST00000409809 MRPS25P82663 173 aaKnown RBP14.13□□□□□ -0.15
COL6A3-206ENST00000409809 FRMD3A2A2Y4 597 aa14.12□□□□□ -0.15
COL6A3-206ENST00000409809 TTLL7Q6ZT98 887 aa14.12□□□□□ -0.15
COL6A3-206ENST00000409809 TDRD7Q8NHU6 1098 aaKnown RBP14.12□□□□□ -0.15
COL6A3-206ENST00000409809 CXorf56Q9H5V9 222 aa14.12□□□□□ -0.15
COL6A3-206ENST00000409809 EXOC5O00471 708 aa14.12□□□□□ -0.15
COL6A3-206ENST00000409809 SERPINB2P05120 415 aa14.12□□□□□ -0.15
COL6A3-206ENST00000409809 KLHL30Q0D2K2 578 aa14.12□□□□□ -0.15
COL6A3-206ENST00000409809 FAM81BQ96LP2 452 aa14.12□□□□□ -0.15
COL6A3-206ENST00000409809 UBE4BO95155 1302 aa14.12□□□□□ -0.15
COL6A3-206ENST00000409809 MMEL1Q495T6 779 aa14.12□□□□□ -0.15
COL6A3-206ENST00000409809 SLC12A5Q9H2X9 1139 aa14.12□□□□□ -0.15
COL6A3-206ENST00000409809 SPTLC3Q9NUV7 552 aa14.12□□□□□ -0.15
COL6A3-206ENST00000409809 RAPGEF6Q8TEU7 1601 aa14.12□□□□□ -0.15
COL6A3-206ENST00000409809 KDM1AO60341 852 aa14.12□□□□□ -0.15
COL6A3-206ENST00000409809 RPS6KB1P23443 525 aa14.12□□□□□ -0.15
COL6A3-206ENST00000409809 MYO10Q9HD67 2058 aa14.12□□□□□ -0.15
COL6A3-206ENST00000409809 NAPAP54920 295 aa14.12□□□□□ -0.15
COL6A3-206ENST00000409809 TXNDC2Q86VQ3 553 aa14.12□□□□□ -0.15
COL6A3-206ENST00000409809 ZNF280CQ8ND82 737 aa14.12□□□□□ -0.15
COL6A3-206ENST00000409809 GSDMAQ96QA5 445 aa14.12□□□□□ -0.15
COL6A3-206ENST00000409809 XPO4Q9C0E2 1151 aaKnown RBP14.12□□□□□ -0.15
COL6A3-206ENST00000409809 RGS12O14924 1447 aa14.12□□□□□ -0.15
COL6A3-206ENST00000409809 IKBKBO14920 756 aa14.12□□□□□ -0.15
COL6A3-206ENST00000409809 DEAF1O75398 565 aaPredicted RBP14.12□□□□□ -0.15
COL6A3-206ENST00000409809 MYL1P05976 194 aa14.12□□□□□ -0.15
COL6A3-206ENST00000409809 TMED10P49755 219 aaKnown RBP14.12□□□□□ -0.15
COL6A3-206ENST00000409809 MRPS35P82673 323 aaKnown RBP14.12□□□□□ -0.15
COL6A3-206ENST00000409809 TRIML2Q8N7C3 387 aa14.12□□□□□ -0.15
COL6A3-206ENST00000409809 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP14.12□□□□□ -0.154e-7■■■■■ 58.1
COL6A3-206ENST00000409809 MMEP08473 750 aa14.11□□□□□ -0.15
COL6A3-206ENST00000409809 NONOQ15233 471 aaKnown RBP eCLIP14.11□□□□□ -0.15
COL6A3-206ENST00000409809 E2F4Q16254 413 aa14.11□□□□□ -0.15
COL6A3-206ENST00000409809 PRAM1Q96QH2 718 aa14.11□□□□□ -0.15
COL6A3-206ENST00000409809 BRD1O95696 1058 aa14.11□□□□□ -0.15
COL6A3-206ENST00000409809 MTX1Q13505 466 aa14.11□□□□□ -0.15
COL6A3-206ENST00000409809 SESTD1Q86VW0 696 aa14.11□□□□□ -0.15
COL6A3-206ENST00000409809 CEP70Q8NHQ1 597 aa14.11□□□□□ -0.15
COL6A3-206ENST00000409809 MORC2Q9Y6X9 1032 aaPredicted RBP14.11□□□□□ -0.15
COL6A3-206ENST00000409809 TRIM11Q96F44 468 aa14.11□□□□□ -0.15
COL6A3-206ENST00000409809 H7C1D1 291 aa14.11□□□□□ -0.15
COL6A3-206ENST00000409809 RBM5P52756 815 aaKnown RBP eCLIP14.11□□□□□ -0.15
COL6A3-206ENST00000409809 ATG16L1Q676U5 607 aa14.11□□□□□ -0.15
COL6A3-206ENST00000409809 PBKQ96KB5 322 aa14.11□□□□□ -0.15
COL6A3-206ENST00000409809 FAM8A1Q9UBU6 413 aa14.11□□□□□ -0.15
COL6A3-206ENST00000409809 LCMT1Q9UIC8 334 aa14.11□□□□□ -0.15
COL6A3-206ENST00000409809 HSP90AA4PQ58FG1 418 aa14.11□□□□□ -0.15
COL6A3-206ENST00000409809 CCDC61Q9Y6R9 512 aa14.11□□□□□ -0.15
COL6A3-206ENST00000409809 PLXNC1O60486 1568 aa14.11□□□□□ -0.15
COL6A3-206ENST00000409809 RANBP1P43487 201 aa14.11□□□□□ -0.15
COL6A3-206ENST00000409809 KDM3AQ9Y4C1 1321 aa14.11□□□□□ -0.15
COL6A3-206ENST00000409809 CYLC2Q14093 348 aaPredicted RBP14.1□□□□□ -0.15
COL6A3-206ENST00000409809 PALM2Q8IXS6 379 aa14.1□□□□□ -0.15
COL6A3-206ENST00000409809 VPS37BQ9H9H4 285 aa14.1□□□□□ -0.15
COL6A3-206ENST00000409809 GRIN2AQ12879 1464 aa14.1□□□□□ -0.15
COL6A3-206ENST00000409809 IQCA1LA6NCM1 817 aa14.1□□□□□ -0.15
COL6A3-206ENST00000409809 PARP9Q8IXQ6 854 aa14.1□□□□□ -0.15
COL6A3-206ENST00000409809 NECAB1Q8N987 351 aa14.1□□□□□ -0.15
COL6A3-206ENST00000409809 TERB1Q8NA31 727 aa14.1□□□□□ -0.15
COL6A3-206ENST00000409809 SNX29Q8TEQ0 813 aa14.1□□□□□ -0.15
COL6A3-206ENST00000409809 SOS2Q07890 1332 aaPredicted RBP14.1□□□□□ -0.15
COL6A3-206ENST00000409809 TSPY3P0CV98 308 aa14.1□□□□□ -0.15
COL6A3-206ENST00000409809 TSPY8P0CW00 308 aa14.1□□□□□ -0.15
COL6A3-206ENST00000409809 KIF9Q9HAQ2 790 aa14.1□□□□□ -0.15
COL6A3-206ENST00000409809 ADAM21Q9UKJ8 722 aa14.1□□□□□ -0.15
COL6A3-206ENST00000409809 IL15P40933 162 aaPredicted RBP14.1□□□□□ -0.15
COL6A3-206ENST00000409809 GRAMD1AQ96CP6 724 aa14.1□□□□□ -0.15
COL6A3-206ENST00000409809 GTF3C5Q9Y5Q8 519 aaPredicted RBP14.1□□□□□ -0.15
COL6A3-206ENST00000409809 DKC1O60832 514 aaKnown RBP eCLIP14.1□□□□□ -0.15
COL6A3-206ENST00000409809 CHMLP26374 656 aa14.1□□□□□ -0.15
COL6A3-206ENST00000409809 FAM133BQ5BKY9 247 aaKnown RBP14.1□□□□□ -0.15
COL6A3-206ENST00000409809 PLEKHM2Q8IWE5 1019 aa14.1□□□□□ -0.15
COL6A3-206ENST00000409809 BICC1Q9H694 974 aaKnown RBP14.1□□□□□ -0.15
COL6A3-206ENST00000409809 C4BPBP20851 252 aa14.1□□□□□ -0.15
COL6A3-206ENST00000409809 ANO5Q75V66 913 aa14.1□□□□□ -0.15
COL6A3-206ENST00000409809 GNL3Q9BVP2 549 aaKnown RBP eCLIP14.1□□□□□ -0.15
COL6A3-206ENST00000409809 IPO11Q9UI26 975 aaKnown RBP14.1□□□□□ -0.15
COL6A3-206ENST00000409809 REREQ9P2R6 1566 aa14.1□□□□□ -0.15
COL6A3-206ENST00000409809 GSTA2P09210 222 aa14.1□□□□□ -0.15
COL6A3-206ENST00000409809 RSAD2Q8WXG1 361 aa14.1□□□□□ -0.15
COL6A3-206ENST00000409809 FOXP2O15409 715 aa14.09□□□□□ -0.15
COL6A3-206ENST00000409809 DCAF17Q5H9S7 520 aaPredicted RBP14.09□□□□□ -0.15
COL6A3-206ENST00000409809 CDAN1Q8IWY9 1227 aa14.09□□□□□ -0.15
COL6A3-206ENST00000409809 DBNLQ9UJU6 430 aaKnown RBP14.09□□□□□ -0.15
COL6A3-206ENST00000409809 NOC2LQ9Y3T9 749 aaKnown RBP14.09□□□□□ -0.15
COL6A3-206ENST00000409809 UTP18Q9Y5J1 556 aaKnown RBP eCLIP14.09□□□□□ -0.15
COL6A3-206ENST00000409809 DUOX2Q9NRD8 1548 aa14.09□□□□□ -0.15
COL6A3-206ENST00000409809 EEF1GP26641 437 aaKnown RBP14.09□□□□□ -0.15
COL6A3-206ENST00000409809 CLCN6P51797 869 aa14.09□□□□□ -0.15
COL6A3-206ENST00000409809 ATP8B2P98198 1209 aa14.09□□□□□ -0.15
COL6A3-206ENST00000409809 NT5C3AQ9H0P0 336 aa14.09□□□□□ -0.15
COL6A3-206ENST00000409809 ZNF277Q9NRM2 450 aaPredicted RBP14.09□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms