RNA–Protein interactions for RNA: ENST00000409694.6

SYNE1-210, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,634 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-210ENST00000409694 ANKRD13DQ6ZTN6 518 aa8.62□□□□□ -1.03
SYNE1-210ENST00000409694 MTBPQ96DY7 904 aa8.62□□□□□ -1.03
SYNE1-210ENST00000409694 MID2Q9UJV3 735 aa8.62□□□□□ -1.03
SYNE1-210ENST00000409694 PRIM1P49642 420 aaKnown RBP8.62□□□□□ -1.03
SYNE1-210ENST00000409694 IL1RL1Q01638 556 aa8.62□□□□□ -1.03
SYNE1-210ENST00000409694 CWF19L2Q2TBE0 894 aaKnown RBP8.62□□□□□ -1.03
SYNE1-210ENST00000409694 STX19Q8N4C7 294 aa8.62□□□□□ -1.03
SYNE1-210ENST00000409694 MED10Q9BTT4 135 aa8.62□□□□□ -1.03
SYNE1-210ENST00000409694 IBTKQ9P2D0 1353 aaPredicted RBP8.62□□□□□ -1.03
SYNE1-210ENST00000409694 KRIT1O00522 736 aa8.62□□□□□ -1.03
SYNE1-210ENST00000409694 XRCC5P13010 732 aaKnown RBP8.62□□□□□ -1.03
SYNE1-210ENST00000409694 HDAC4P56524 1084 aa8.62□□□□□ -1.03
SYNE1-210ENST00000409694 KCNH3Q9ULD8 1083 aa8.62□□□□□ -1.03
SYNE1-210ENST00000409694 WWC3Q9ULE0 1092 aa8.62□□□□□ -1.03
SYNE1-210ENST00000409694 PTPREP23469 700 aa8.62□□□□□ -1.03
SYNE1-210ENST00000409694 KRT25Q7Z3Z0 450 aa8.62□□□□□ -1.03
SYNE1-210ENST00000409694 ANKRD35Q8N283 1001 aa8.62□□□□□ -1.03
SYNE1-210ENST00000409694 A6NJR5 290 aa8.62□□□□□ -1.03
SYNE1-210ENST00000409694 INHBAP08476 426 aa8.62□□□□□ -1.03
SYNE1-210ENST00000409694 CCDC197Q8NCU1 140 aa8.62□□□□□ -1.03
SYNE1-210ENST00000409694 ENOX1Q8TC92 643 aaKnown RBP8.62□□□□□ -1.03
SYNE1-210ENST00000409694 GPC4O75487 556 aa8.61□□□□□ -1.03
SYNE1-210ENST00000409694 SDSP20132 328 aa8.61□□□□□ -1.03
SYNE1-210ENST00000409694 PALMDQ9NP74 551 aa8.61□□□□□ -1.03
SYNE1-210ENST00000409694 FAM95CA0A1B0GW59 222 aa8.61□□□□□ -1.03
SYNE1-210ENST00000409694 GTPBP10A4D1E9 387 aaKnown RBP8.61□□□□□ -1.03
SYNE1-210ENST00000409694 GRM8O00222 908 aa8.61□□□□□ -1.03
SYNE1-210ENST00000409694 NLRP12P59046 1061 aa8.61□□□□□ -1.03
SYNE1-210ENST00000409694 SPOUT1Q5T280 376 aaKnown RBP8.61□□□□□ -1.03
SYNE1-210ENST00000409694 KLHL7Q8IXQ5 586 aa8.61□□□□□ -1.03
SYNE1-210ENST00000409694 NECAB1Q8N987 351 aa8.61□□□□□ -1.03
SYNE1-210ENST00000409694 DENND2AQ9ULE3 1009 aa8.61□□□□□ -1.03
SYNE1-210ENST00000409694 BZW2Q9Y6E2 419 aaKnown RBP8.61□□□□□ -1.03
SYNE1-210ENST00000409694 ATP8B3O60423 1300 aa8.61□□□□□ -1.03
SYNE1-210ENST00000409694 SERPINB10P48595 397 aa8.61□□□□□ -1.03
SYNE1-210ENST00000409694 APOBRQ0VD83 1088 aa8.61□□□□□ -1.03
SYNE1-210ENST00000409694 SNX1Q13596 522 aa8.61□□□□□ -1.03
SYNE1-210ENST00000409694 KRT82Q9NSB4 513 aa8.61□□□□□ -1.03
SYNE1-210ENST00000409694 ZNF233A6NK53 670 aa8.61□□□□□ -1.03
SYNE1-210ENST00000409694 GLE1Q53GS7 698 aaKnown RBP8.61□□□□□ -1.03
SYNE1-210ENST00000409694 CHEK2O96017 543 aa8.61□□□□□ -1.03
SYNE1-210ENST00000409694 ELF2Q15723 593 aa8.61□□□□□ -1.03
SYNE1-210ENST00000409694 IQGAP2Q13576 1575 aa8.61□□□□□ -1.03
SYNE1-210ENST00000409694 KDM5AP29375 1690 aaKnown RBP8.61□□□□□ -1.03
SYNE1-210ENST00000409694 TMEM232C9JQI7 657 aa8.61□□□□□ -1.03
SYNE1-210ENST00000409694 TNNC2P02585 160 aa8.61□□□□□ -1.03
SYNE1-210ENST00000409694 DDX5P17844 614 aaKnown RBP8.61□□□□□ -1.03
SYNE1-210ENST00000409694 POLD1P28340 1107 aa8.61□□□□□ -1.03
SYNE1-210ENST00000409694 YARSP54577 528 aaKnown RBP8.61□□□□□ -1.03
SYNE1-210ENST00000409694 TBCCQ15814 346 aa8.61□□□□□ -1.03
SYNE1-210ENST00000409694 MYCT1Q8N699 235 aa8.61□□□□□ -1.03
SYNE1-210ENST00000409694 OR9Q1Q8NGQ5 310 aa8.61□□□□□ -1.03
SYNE1-210ENST00000409694 RBM17Q96I25 401 aaKnown RBP8.61□□□□□ -1.03
SYNE1-210ENST00000409694 ZBTB3Q9H5J0 574 aa8.61□□□□□ -1.03
SYNE1-210ENST00000409694 SUFUQ9UMX1 484 aa8.61□□□□□ -1.03
SYNE1-210ENST00000409694 TMCC1O94876 653 aa8.61□□□□□ -1.03
SYNE1-210ENST00000409694 CLTAP09496 248 aa8.61□□□□□ -1.03
SYNE1-210ENST00000409694 ITKQ08881 620 aa8.61□□□□□ -1.03
SYNE1-210ENST00000409694 ANKRD42Q8N9B4 389 aa8.61□□□□□ -1.03
SYNE1-210ENST00000409694 LETM2Q2VYF4 491 aa8.61□□□□□ -1.03
SYNE1-210ENST00000409694 EXOC3O60645 756 aa8.61□□□□□ -1.03
SYNE1-210ENST00000409694 KRT19P08727 400 aa8.61□□□□□ -1.03
SYNE1-210ENST00000409694 STAT1P42224 750 aa8.61□□□□□ -1.03
SYNE1-210ENST00000409694 ADCY7P51828 1080 aa8.61□□□□□ -1.03
SYNE1-210ENST00000409694 GNGT1P63211 74 aa8.61□□□□□ -1.03
SYNE1-210ENST00000409694 RAPH1Q70E73 1250 aa8.61□□□□□ -1.03
SYNE1-210ENST00000409694 FGD4Q96M96 766 aa8.61□□□□□ -1.03
SYNE1-210ENST00000409694 GSDMAQ96QA5 445 aa8.61□□□□□ -1.03
SYNE1-210ENST00000409694 YY1AP1Q9H869 796 aa8.61□□□□□ -1.03
SYNE1-210ENST00000409694 C1orf112Q9NSG2 853 aa8.61□□□□□ -1.03
SYNE1-210ENST00000409694 CCDC78A2IDD5 438 aa8.6□□□□□ -1.03
SYNE1-210ENST00000409694 PEX19P40855 299 aa8.6□□□□□ -1.03
SYNE1-210ENST00000409694 NSFP46459 744 aaKnown RBP8.6□□□□□ -1.03
SYNE1-210ENST00000409694 POSTNQ15063 836 aa8.6□□□□□ -1.03
SYNE1-210ENST00000409694 BSPRYQ5W0U4 402 aa8.6□□□□□ -1.03
SYNE1-210ENST00000409694 ARHGEF18Q6ZSZ5 1173 aa8.6□□□□□ -1.03
SYNE1-210ENST00000409694 GADD45GIP1Q8TAE8 222 aaPredicted RBP8.6□□□□□ -1.03
SYNE1-210ENST00000409694 NELFBQ8WX92 580 aa8.6□□□□□ -1.03
SYNE1-210ENST00000409694 TROQ12816 1431 aaPredicted RBP8.6□□□□□ -1.03
SYNE1-210ENST00000409694 CFAP65Q6ZU64 1925 aaKnown RBP8.6□□□□□ -1.03
SYNE1-210ENST00000409694 IPO5O00410 1097 aaKnown RBP8.6□□□□□ -1.03
SYNE1-210ENST00000409694 NBPF14Q5TI25 921 aa8.6□□□□□ -1.03
SYNE1-210ENST00000409694 ATP6V0A4Q9HBG4 840 aa8.6□□□□□ -1.03
SYNE1-210ENST00000409694 SOS2Q07890 1332 aaPredicted RBP8.6□□□□□ -1.03
SYNE1-210ENST00000409694 F6X3S4 739 aa8.6□□□□□ -1.03
SYNE1-210ENST00000409694 CCDC159P0C7I6 412 aa8.6□□□□□ -1.03
SYNE1-210ENST00000409694 MRPL28Q13084 256 aaKnown RBP8.6□□□□□ -1.03
SYNE1-210ENST00000409694 NUDCD3Q8IVD9 361 aa8.6□□□□□ -1.03
SYNE1-210ENST00000409694 STX18Q9P2W9 335 aaKnown RBP8.6□□□□□ -1.03
SYNE1-210ENST00000409694 FANCCQ00597 558 aa8.6□□□□□ -1.03
SYNE1-210ENST00000409694 SNRKQ9NRH2 765 aa8.6□□□□□ -1.03
SYNE1-210ENST00000409694 HGSO14964 777 aaPredicted RBP8.6□□□□□ -1.03
SYNE1-210ENST00000409694 ZNF263O14978 683 aa8.6□□□□□ -1.03
SYNE1-210ENST00000409694 MED21Q13503 144 aa8.6□□□□□ -1.03
SYNE1-210ENST00000409694 CREB3L3Q68CJ9 461 aa8.6□□□□□ -1.03
SYNE1-210ENST00000409694 ABTB1Q969K4 478 aaPredicted RBP8.6□□□□□ -1.03
SYNE1-210ENST00000409694 KIF2CQ99661 725 aa8.6□□□□□ -1.03
SYNE1-210ENST00000409694 FRMD4AQ9P2Q2 1039 aaPredicted RBP8.6□□□□□ -1.03
SYNE1-210ENST00000409694 EPB41L3Q9Y2J2 1087 aaPredicted RBP8.6□□□□□ -1.03
SYNE1-210ENST00000409694 EFCAB8A8MWE9 144 aa8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms