RNA–Protein interactions for RNA: ENST00000409285.6

VSX1-203, Transcript of visual system homeobox 1, humanhuman

TSL 1 (best)

Gene VSX1, Length 1,486 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1-203ENST00000409285 KIAA1755Q5JYT7 1200 aa23.87■■□□□ 1.41
VSX1-203ENST00000409285 NOL8Q76FK4 1167 aaKnown RBP23.87■■□□□ 1.41
VSX1-203ENST00000409285 HSCBQ8IWL3 235 aa23.87■■□□□ 1.41
VSX1-203ENST00000409285 CTCFLQ8NI51 663 aaPredicted RBP23.87■■□□□ 1.41
VSX1-203ENST00000409285 NUP133Q8WUM0 1156 aa23.87■■□□□ 1.41
VSX1-203ENST00000409285 CCDC102AQ96A19 550 aa23.87■■□□□ 1.41
VSX1-203ENST00000409285 TMX3Q96JJ7 454 aa23.87■■□□□ 1.41
VSX1-203ENST00000409285 SLKQ9H2G2 1235 aaPredicted RBP23.87■■□□□ 1.41
VSX1-203ENST00000409285 MAD2L2Q9UI95 211 aa23.87■■□□□ 1.41
VSX1-203ENST00000409285 PARP1P09874 1014 aaKnown RBP23.87■■□□□ 1.41
VSX1-203ENST00000409285 VCAM1P19320 739 aa23.87■■□□□ 1.41
VSX1-203ENST00000409285 SLC1A4P43007 532 aa23.87■■□□□ 1.41
VSX1-203ENST00000409285 GTF2A2P52657 109 aa23.87■■□□□ 1.41
VSX1-203ENST00000409285 RTN1Q16799 776 aa23.87■■□□□ 1.41
VSX1-203ENST00000409285 DEFB115Q30KQ5 88 aa23.87■■□□□ 1.41
VSX1-203ENST00000409285 DNAJC5GQ8N7S2 189 aa23.87■■□□□ 1.41
VSX1-203ENST00000409285 CHMP4CQ96CF2 233 aa23.87■■□□□ 1.41
VSX1-203ENST00000409285 TMOD4Q9NZQ9 345 aa23.87■■□□□ 1.41
VSX1-203ENST00000409285 PLA2G6O60733 806 aa23.86■■□□□ 1.41
VSX1-203ENST00000409285 RXRAP19793 462 aa23.86■■□□□ 1.41
VSX1-203ENST00000409285 ANP32AP39687 249 aaKnown RBP23.86■■□□□ 1.41
VSX1-203ENST00000409285 SCRN1Q12765 414 aa23.86■■□□□ 1.41
VSX1-203ENST00000409285 ZYXQ15942 572 aaKnown RBP23.86■■□□□ 1.41
VSX1-203ENST00000409285 RASGRP2Q7LDG7 609 aa23.86■■□□□ 1.41
VSX1-203ENST00000409285 MS4A4AQ96JQ5 239 aa23.86■■□□□ 1.41
VSX1-203ENST00000409285 FAM217BQ9NTX9 383 aaPredicted RBP23.86■■□□□ 1.41
VSX1-203ENST00000409285 NAP1L2Q9ULW6 460 aaPredicted RBP23.86■■□□□ 1.41
VSX1-203ENST00000409285 FAM155AB1AL88 458 aaPredicted RBP23.85■■□□□ 1.41
VSX1-203ENST00000409285 DHX16O60231 1041 aaKnown RBP23.85■■□□□ 1.41
VSX1-203ENST00000409285 BMP3P12645 472 aa23.85■■□□□ 1.41
VSX1-203ENST00000409285 SMARCA1P28370 1054 aa23.85■■□□□ 1.41
VSX1-203ENST00000409285 GNAQP50148 359 aa23.85■■□□□ 1.41
VSX1-203ENST00000409285 MOGSQ13724 837 aa23.85■■□□□ 1.41
VSX1-203ENST00000409285 FASTKD5Q7L8L6 764 aaKnown RBP23.85■■□□□ 1.41
VSX1-203ENST00000409285 SPICE1Q8N0Z3 855 aa23.85■■□□□ 1.41
VSX1-203ENST00000409285 LZTS2Q9BRK4 669 aa23.85■■□□□ 1.41
VSX1-203ENST00000409285 TESPA1A2RU30 521 aaPredicted RBP23.83■■□□□ 1.41
VSX1-203ENST00000409285 CETPP11597 493 aa23.83■■□□□ 1.41
VSX1-203ENST00000409285 CDC27P30260 824 aa23.83■■□□□ 1.41
VSX1-203ENST00000409285 ST3GAL1Q11201 340 aa23.83■■□□□ 1.41
VSX1-203ENST00000409285 STK3Q13188 491 aa23.83■■□□□ 1.41
VSX1-203ENST00000409285 DGKZQ13574 1117 aa23.83■■□□□ 1.41
VSX1-203ENST00000409285 CUL4AQ13619 759 aa23.83■■□□□ 1.41
VSX1-203ENST00000409285 BECN1Q14457 450 aa23.83■■□□□ 1.41
VSX1-203ENST00000409285 BTNL9Q6UXG8 535 aa23.83■■□□□ 1.41
VSX1-203ENST00000409285 PAXIP1Q6ZW49 1069 aaPredicted RBP23.83■■□□□ 1.41
VSX1-203ENST00000409285 TMTC3Q6ZXV5 915 aa23.83■■□□□ 1.41
VSX1-203ENST00000409285 RAB11FIP4Q86YS3 637 aa23.83■■□□□ 1.41
VSX1-203ENST00000409285 PCNTO95613 3336 aa23.83■■□□□ 1.4
VSX1-203ENST00000409285 RAD21O60216 631 aa23.82■■□□□ 1.4
VSX1-203ENST00000409285 CCT2P78371 535 aaKnown RBP23.82■■□□□ 1.4
VSX1-203ENST00000409285 NTRK3Q16288 839 aa23.82■■□□□ 1.4
VSX1-203ENST00000409285 CCDC96Q2M329 555 aa23.82■■□□□ 1.4
VSX1-203ENST00000409285 FAM83BQ5T0W9 1011 aa23.82■■□□□ 1.4
VSX1-203ENST00000409285 CCDC144CPQ8IYA2 1237 aa23.82■■□□□ 1.4
VSX1-203ENST00000409285 STAG2Q8N3U4 1231 aa23.82■■□□□ 1.4
VSX1-203ENST00000409285 NCOA5Q9HCD5 579 aaKnown RBP23.82■■□□□ 1.4
VSX1-203ENST00000409285 ZBTB4Q9P1Z0 1013 aaPredicted RBP23.82■■□□□ 1.4
VSX1-203ENST00000409285 AGTPBP1Q9UPW5 1226 aa23.82■■□□□ 1.4
VSX1-203ENST00000409285 MTMR7Q9Y216 660 aa23.82■■□□□ 1.4
VSX1-203ENST00000409285 KLRF2D3W0D1 207 aa23.81■■□□□ 1.4
VSX1-203ENST00000409285 HOXA7P31268 230 aaPredicted RBP23.81■■□□□ 1.4
VSX1-203ENST00000409285 STAT2P52630 851 aa23.81■■□□□ 1.4
VSX1-203ENST00000409285 KCTD1Q719H9 257 aa23.81■■□□□ 1.4
VSX1-203ENST00000409285 NUP88Q99567 741 aaPredicted RBP23.81■■□□□ 1.4
VSX1-203ENST00000409285 LLPHQ9BRT6 129 aaKnown RBP23.81■■□□□ 1.4
VSX1-203ENST00000409285 SPZ1Q9BXG8 430 aa23.81■■□□□ 1.4
VSX1-203ENST00000409285 RPAP3Q9H6T3 665 aaPredicted RBP23.81■■□□□ 1.4
VSX1-203ENST00000409285 FEM1BQ9UK73 627 aa23.81■■□□□ 1.4
VSX1-203ENST00000409285 SLC45A1Q9Y2W3 748 aa23.81■■□□□ 1.4
VSX1-203ENST00000409285 MYPNQ86TC9 1320 aa23.81■■□□□ 1.4
VSX1-203ENST00000409285 MANSC4A6NHS7 340 aaPredicted RBP23.81■■□□□ 1.4
VSX1-203ENST00000409285 IFNAR1P17181 557 aa23.81■■□□□ 1.4
VSX1-203ENST00000409285 ADD1P35611 737 aaKnown RBP23.81■■□□□ 1.4
VSX1-203ENST00000409285 FUT2Q10981 343 aa23.81■■□□□ 1.4
VSX1-203ENST00000409285 FRMPD2Q68DX3 1309 aaPredicted RBP23.81■■□□□ 1.4
VSX1-203ENST00000409285 NECAB1Q8N987 351 aa23.81■■□□□ 1.4
VSX1-203ENST00000409285 RBBP6Q7Z6E9 1792 aaKnown RBP23.8■■□□□ 1.4
VSX1-203ENST00000409285 CDKL5O76039 1030 aa23.8■■□□□ 1.4
VSX1-203ENST00000409285 GOLGA8HP0CJ92 632 aa23.8■■□□□ 1.4
VSX1-203ENST00000409285 CYP4F22Q6NT55 531 aa23.8■■□□□ 1.4
VSX1-203ENST00000409285 CPLX2Q6PUV4 134 aaKnown RBP23.8■■□□□ 1.4
VSX1-203ENST00000409285 FAM160B2Q86V87 743 aa23.8■■□□□ 1.4
VSX1-203ENST00000409285 CHURC1Q8WUH1 139 aa23.8■■□□□ 1.4
VSX1-203ENST00000409285 INTS4Q96HW7 963 aaKnown RBP23.8■■□□□ 1.4
VSX1-203ENST00000409285 RIOX1Q9H6W3 641 aa23.8■■□□□ 1.4
VSX1-203ENST00000409285 CNTNAP5Q8WYK1 1306 aa23.79■■□□□ 1.4
VSX1-203ENST00000409285 CCL15-CCL14A0A0B4J2E2 113 aa23.79■■□□□ 1.4
VSX1-203ENST00000409285 USP17L15C9J2P7 530 aa23.79■■□□□ 1.4
VSX1-203ENST00000409285 USP17L13C9JLJ4 530 aa23.79■■□□□ 1.4
VSX1-203ENST00000409285 USP17L11C9JVI0 530 aa23.79■■□□□ 1.4
VSX1-203ENST00000409285 USP17L18D6R9N7 530 aa23.79■■□□□ 1.4
VSX1-203ENST00000409285 USP17L22D6RA61 530 aa23.79■■□□□ 1.4
VSX1-203ENST00000409285 USP17L17D6RBQ6 530 aa23.79■■□□□ 1.4
VSX1-203ENST00000409285 USP17L19D6RCP7 530 aa23.79■■□□□ 1.4
VSX1-203ENST00000409285 USP17L20D6RJB6 530 aa23.79■■□□□ 1.4
VSX1-203ENST00000409285 CPLX1O14810 134 aa23.79■■□□□ 1.4
VSX1-203ENST00000409285 PLEKHA8P1O95397 391 aa23.79■■□□□ 1.4
VSX1-203ENST00000409285 VEGFBP49765 207 aa23.79■■□□□ 1.4
VSX1-203ENST00000409285 INHBEP58166 350 aa23.79■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms