RNA–Protein interactions for RNA: ENST00000404484.8

TPM1-208, Transcript of tropomyosin 1, humanhuman

TSL 1 (best) BASIC

Gene TPM1, Length 1,568 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-208ENST00000404484 MPHOSPH10O00566 681 aaKnown RBP24.32■■□□□ 1.48
TPM1-208ENST00000404484 PRPF3O43395 683 aaKnown RBP24.31■■□□□ 1.48
TPM1-208ENST00000404484 FOSBP53539 338 aa24.31■■□□□ 1.48
TPM1-208ENST00000404484 KRT85P78386 507 aa24.31■■□□□ 1.48
TPM1-208ENST00000404484 MAP2K1Q02750 393 aaPredicted RBP24.31■■□□□ 1.48
TPM1-208ENST00000404484 CLMNQ96JQ2 1002 aa24.31■■□□□ 1.48
TPM1-208ENST00000404484 XBP1P17861 261 aa24.3■■□□□ 1.48
TPM1-208ENST00000404484 IREB2P48200 963 aaKnown RBP24.3■■□□□ 1.48
TPM1-208ENST00000404484 FUT2Q10981 343 aa24.3■■□□□ 1.48
TPM1-208ENST00000404484 TMEM179Q6ZVK1 233 aa24.3■■□□□ 1.48
TPM1-208ENST00000404484 TRAK2O60296 914 aa24.29■■□□□ 1.48
TPM1-208ENST00000404484 PLEKHA8P1O95397 391 aa24.29■■□□□ 1.48
TPM1-208ENST00000404484 KIF23Q02241 960 aaPredicted RBP24.29■■□□□ 1.48
TPM1-208ENST00000404484 FOXD4L6Q3SYB3 417 aaPredicted RBP24.29■■□□□ 1.48
TPM1-208ENST00000404484 ATL3Q6DD88 541 aa24.29■■□□□ 1.48
TPM1-208ENST00000404484 FOXD4L3Q6VB84 417 aaPredicted RBP24.29■■□□□ 1.48
TPM1-208ENST00000404484 MIGA2Q7L4E1 593 aa24.29■■□□□ 1.48
TPM1-208ENST00000404484 TMEM87AQ8NBN3 555 aa24.29■■□□□ 1.48
TPM1-208ENST00000404484 ZBTB4Q9P1Z0 1013 aaPredicted RBP24.29■■□□□ 1.48
TPM1-208ENST00000404484 CNTNAP5Q8WYK1 1306 aa24.29■■□□□ 1.48
TPM1-208ENST00000404484 TBC1D12O60347 775 aa24.29■■□□□ 1.48
TPM1-208ENST00000404484 NCLP19338 710 aaKnown RBP24.29■■□□□ 1.48
TPM1-208ENST00000404484 GUCY1B3Q02153 619 aa24.29■■□□□ 1.48
TPM1-208ENST00000404484 BRAPQ7Z569 592 aa24.29■■□□□ 1.48
TPM1-208ENST00000404484 CCDC82Q8N4S0 544 aa24.29■■□□□ 1.48
TPM1-208ENST00000404484 SLC10A4Q96EP9 437 aa24.29■■□□□ 1.48
TPM1-208ENST00000404484 KANSL2Q9H9L4 492 aa24.29■■□□□ 1.48
TPM1-208ENST00000404484 XPO5Q9HAV4 1204 aaKnown RBP eCLIP24.29■■□□□ 1.48
TPM1-208ENST00000404484 LMBRD1Q9NUN5 540 aa24.29■■□□□ 1.48
TPM1-208ENST00000404484 MYH6P13533 1939 aa24.28■■□□□ 1.48
TPM1-208ENST00000404484 UNCXA6NJT0 531 aa24.28■■□□□ 1.48
TPM1-208ENST00000404484 PARP1P09874 1014 aaKnown RBP24.28■■□□□ 1.48
TPM1-208ENST00000404484 DNM1Q05193 864 aaKnown RBP24.28■■□□□ 1.48
TPM1-208ENST00000404484 ABCB5Q2M3G0 1257 aa24.28■■□□□ 1.48
TPM1-208ENST00000404484 CABP5Q9NP86 173 aa24.28■■□□□ 1.48
TPM1-208ENST00000404484 FAM196BA6NMK8 535 aa24.27■■□□□ 1.48
TPM1-208ENST00000404484 PRPF40AO75400 957 aaKnown RBP24.27■■□□□ 1.48
TPM1-208ENST00000404484 SAFBQ15424 915 aaKnown RBP eCLIP24.27■■□□□ 1.48
TPM1-208ENST00000404484 KRT40Q6A162 431 aa24.27■■□□□ 1.48
TPM1-208ENST00000404484 PPP1R3FQ6ZSY5 799 aaPredicted RBP24.27■■□□□ 1.48
TPM1-208ENST00000404484 ANKRD13AQ8IZ07 590 aa24.27■■□□□ 1.48
TPM1-208ENST00000404484 CMTR1Q8N1G2 835 aaKnown RBP24.27■■□□□ 1.48
TPM1-208ENST00000404484 SRBD1Q8N5C6 995 aaKnown RBP24.27■■□□□ 1.48
TPM1-208ENST00000404484 HOOK2Q96ED9 719 aa24.27■■□□□ 1.48
TPM1-208ENST00000404484 SCAND2PQ9GZW5 306 aaPredicted RBP24.27■■□□□ 1.48
TPM1-208ENST00000404484 MAD2L2Q9UI95 211 aa24.27■■□□□ 1.48
TPM1-208ENST00000404484 CNPY2Q9Y2B0 182 aa24.27■■□□□ 1.48
TPM1-208ENST00000404484 PALM3A6NDB9 673 aaPredicted RBP24.26■■□□□ 1.47
TPM1-208ENST00000404484 FOXN1O15353 648 aa24.26■■□□□ 1.47
TPM1-208ENST00000404484 SMARCA1P28370 1054 aa24.26■■□□□ 1.47
TPM1-208ENST00000404484 MAP3K9P80192 1104 aa24.26■■□□□ 1.47
TPM1-208ENST00000404484 MKRN3Q13064 507 aaKnown RBP24.26■■□□□ 1.47
TPM1-208ENST00000404484 DDX55Q8NHQ9 600 aaKnown RBP eCLIP24.26■■□□□ 1.47
TPM1-208ENST00000404484 AIFM3Q96NN9 605 aa24.26■■□□□ 1.47
TPM1-208ENST00000404484 NYAP2Q9P242 653 aa24.26■■□□□ 1.47
TPM1-208ENST00000404484 CLIP2Q9UDT6 1046 aa24.26■■□□□ 1.47
TPM1-208ENST00000404484 CFAP45Q9UL16 551 aa24.26■■□□□ 1.47
TPM1-208ENST00000404484 ASPRV1Q53RT3 343 aa24.25■■□□□ 1.47
TPM1-208ENST00000404484 CHAMP1Q96JM3 812 aa24.25■■□□□ 1.47
TPM1-208ENST00000404484 ZNF396Q96N95 335 aaPredicted RBP24.25■■□□□ 1.47
TPM1-208ENST00000404484 V9GY48 417 aaPredicted RBP24.25■■□□□ 1.47
TPM1-208ENST00000404484 THSD7BQ9C0I4 1608 aa24.25■■□□□ 1.47
TPM1-208ENST00000404484 GNL2Q13823 731 aaKnown RBP24.25■■□□□ 1.47
TPM1-208ENST00000404484 SPRYD7Q5W111 196 aa24.25■■□□□ 1.47
TPM1-208ENST00000404484 DCAF15Q66K64 600 aa24.25■■□□□ 1.47
TPM1-208ENST00000404484 OTUD7BQ6GQQ9 843 aa24.25■■□□□ 1.47
TPM1-208ENST00000404484 TCHHQ07283 1943 aa24.24■■□□□ 1.47
TPM1-208ENST00000404484 FIBPO43427 364 aa24.24■■□□□ 1.47
TPM1-208ENST00000404484 MBD3O95983 291 aa24.24■■□□□ 1.47
TPM1-208ENST00000404484 GUCY1A2P33402 732 aa24.24■■□□□ 1.47
TPM1-208ENST00000404484 ICA1Q05084 483 aa24.24■■□□□ 1.47
TPM1-208ENST00000404484 MKL1Q969V6 931 aa24.24■■□□□ 1.47
TPM1-208ENST00000404484 SPZ1Q9BXG8 430 aa24.24■■□□□ 1.47
TPM1-208ENST00000404484 SYNPO2Q9UMS6 1093 aa24.24■■□□□ 1.47
TPM1-208ENST00000404484 DDX49Q9Y6V7 483 aaKnown RBP24.24■■□□□ 1.47
TPM1-208ENST00000404484 PDHBP11177 359 aa24.23■■□□□ 1.47
TPM1-208ENST00000404484 VGLL4Q14135 290 aa24.23■■□□□ 1.47
TPM1-208ENST00000404484 KLHL40Q2TBA0 621 aa24.23■■□□□ 1.47
TPM1-208ENST00000404484 LRRC47Q8N1G4 583 aaKnown RBP24.23■■□□□ 1.47
TPM1-208ENST00000404484 WRNIP1Q96S55 665 aa24.23■■□□□ 1.47
TPM1-208ENST00000404484 BEGAINQ9BUH8 593 aa24.23■■□□□ 1.47
TPM1-208ENST00000404484 ZNF341Q9BYN7 854 aa24.23■■□□□ 1.47
TPM1-208ENST00000404484 ELP3Q9H9T3 547 aa24.23■■□□□ 1.47
TPM1-208ENST00000404484 MTMR7Q9Y216 660 aa24.23■■□□□ 1.47
TPM1-208ENST00000404484 ELP1O95163 1332 aa24.23■■□□□ 1.47
TPM1-208ENST00000404484 KLRF2D3W0D1 207 aa24.22■■□□□ 1.47
TPM1-208ENST00000404484 MMP1P03956 469 aa24.22■■□□□ 1.47
TPM1-208ENST00000404484 SLURP2P0DP57 97 aa24.22■■□□□ 1.47
TPM1-208ENST00000404484 SNHG28P0DPA3 235 aa24.22■■□□□ 1.47
TPM1-208ENST00000404484 SCG2P13521 617 aa24.22■■□□□ 1.47
TPM1-208ENST00000404484 ATP2B2Q01814 1243 aa24.22■■□□□ 1.47
TPM1-208ENST00000404484 MAP3K10Q02779 954 aa24.22■■□□□ 1.47
TPM1-208ENST00000404484 PKN1Q16512 942 aa24.22■■□□□ 1.47
TPM1-208ENST00000404484 PFKFB3Q16875 520 aaPredicted RBP24.22■■□□□ 1.47
TPM1-208ENST00000404484 FAM177A1Q8N128 213 aaPredicted RBP24.22■■□□□ 1.47
TPM1-208ENST00000404484 STAG2Q8N3U4 1231 aa24.22■■□□□ 1.47
TPM1-208ENST00000404484 ZKSCAN4Q969J2 545 aaPredicted RBP24.22■■□□□ 1.47
TPM1-208ENST00000404484 WNK4Q96J92 1243 aa24.22■■□□□ 1.47
TPM1-208ENST00000404484 MYH15Q9Y2K3 1946 aa24.22■■□□□ 1.47
TPM1-208ENST00000404484 MYH4Q9Y623 1939 aa24.22■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms