RNA–Protein interactions for RNA: ENST00000394536.4

PCDH1-203, Transcript of protocadherin 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PCDH1, Length 3,827 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-203ENST00000394536 ARID4AP29374 1257 aaPredicted RBP18.09■□□□□ 0.49
PCDH1-203ENST00000394536 FXR1P51114 621 aaKnown RBP eCLIP18.09■□□□□ 0.49
PCDH1-203ENST00000394536 MAP3K14Q99558 947 aa18.09■□□□□ 0.49
PCDH1-203ENST00000394536 SPATA31A3Q5VYP0 1347 aa18.09■□□□□ 0.49
PCDH1-203ENST00000394536 B4DLN1 442 aa18.09■□□□□ 0.49
PCDH1-203ENST00000394536 CSF1RP07333 972 aa18.09■□□□□ 0.49
PCDH1-203ENST00000394536 HIBADHP31937 336 aaKnown RBP18.09■□□□□ 0.49
PCDH1-203ENST00000394536 NOP2P46087 812 aaKnown RBP18.09■□□□□ 0.49
PCDH1-203ENST00000394536 MAP3K9P80192 1104 aa18.09■□□□□ 0.49
PCDH1-203ENST00000394536 PPP2R5BQ15173 497 aa18.09■□□□□ 0.49
PCDH1-203ENST00000394536 TYW1BQ6NUM6 668 aa18.09■□□□□ 0.49
PCDH1-203ENST00000394536 PANX2Q96RD6 677 aa18.09■□□□□ 0.49
PCDH1-203ENST00000394536 IVLP07476 585 aa18.09■□□□□ 0.49
PCDH1-203ENST00000394536 TRIM28Q13263 835 aaKnown RBP18.09■□□□□ 0.49
PCDH1-203ENST00000394536 BLIDQ8IZY5 108 aa18.09■□□□□ 0.49
PCDH1-203ENST00000394536 BCCIPQ9P287 314 aaKnown RBP eCLIP18.09■□□□□ 0.49
PCDH1-203ENST00000394536 GTPBP6O43824 516 aaPredicted RBP18.08■□□□□ 0.49
PCDH1-203ENST00000394536 ZEB2O60315 1214 aa18.08■□□□□ 0.49
PCDH1-203ENST00000394536 PARP1P09874 1014 aaKnown RBP18.08■□□□□ 0.49
PCDH1-203ENST00000394536 EIF6P56537 245 aaKnown RBP18.08■□□□□ 0.49
PCDH1-203ENST00000394536 TMEM266Q2M3C6 531 aa18.08■□□□□ 0.49
PCDH1-203ENST00000394536 TRIM65Q6PJ69 517 aa18.08■□□□□ 0.49
PCDH1-203ENST00000394536 TAF4BQ92750 862 aa18.08■□□□□ 0.49
PCDH1-203ENST00000394536 KIAA0754O94854 1291 aa18.08■□□□□ 0.48
PCDH1-203ENST00000394536 BAG3O95817 575 aa18.08■□□□□ 0.48
PCDH1-203ENST00000394536 SETQ01105 290 aaPredicted RBP18.08■□□□□ 0.48
PCDH1-203ENST00000394536 NTRK3Q16288 839 aa18.08■□□□□ 0.48
PCDH1-203ENST00000394536 TCERG1LQ5VWI1 586 aa18.08■□□□□ 0.48
PCDH1-203ENST00000394536 WDR19Q8NEZ3 1342 aa18.08■□□□□ 0.48
PCDH1-203ENST00000394536 SHTN1A0MZ66 631 aa18.08■□□□□ 0.48
PCDH1-203ENST00000394536 C2CD5Q86YS7 1000 aa18.08■□□□□ 0.48
PCDH1-203ENST00000394536 CCDC51Q96ER9 411 aa18.08■□□□□ 0.48
PCDH1-203ENST00000394536 TSG101Q99816 390 aa18.08■□□□□ 0.48
PCDH1-203ENST00000394536 SEPT11Q9NVA2 429 aaKnown RBP18.08■□□□□ 0.48
PCDH1-203ENST00000394536 HDAC6Q9UBN7 1215 aa18.08■□□□□ 0.48
PCDH1-203ENST00000394536 F8W031 263 aaPredicted RBP18.07■□□□□ 0.48
PCDH1-203ENST00000394536 BMP6P22004 513 aa18.07■□□□□ 0.48
PCDH1-203ENST00000394536 KCNJ6P48051 423 aa18.07■□□□□ 0.48
PCDH1-203ENST00000394536 TNNI2P48788 182 aa18.07■□□□□ 0.48
PCDH1-203ENST00000394536 GNAQP50148 359 aa18.07■□□□□ 0.48
PCDH1-203ENST00000394536 TRIM14Q14142 442 aa18.07■□□□□ 0.48
PCDH1-203ENST00000394536 TICAM2Q86XR7 235 aa18.07■□□□□ 0.48
PCDH1-203ENST00000394536 PNMA1Q8ND90 353 aa18.07■□□□□ 0.48
PCDH1-203ENST00000394536 STAG1Q8WVM7 1258 aa18.07■□□□□ 0.48
PCDH1-203ENST00000394536 TMX4Q9H1E5 349 aaPredicted RBP18.07■□□□□ 0.48
PCDH1-203ENST00000394536 GOLGA6L10A6NI86 522 aa18.07■□□□□ 0.48
PCDH1-203ENST00000394536 PP2D1A8MPX8 630 aa18.07■□□□□ 0.48
PCDH1-203ENST00000394536 RAD51AP2Q09MP3 1159 aa18.07■□□□□ 0.48
PCDH1-203ENST00000394536 SND1Q7KZF4 910 aaKnown RBP eCLIP18.07■□□□□ 0.48
PCDH1-203ENST00000394536 SETDB2Q96T68 719 aa18.07■□□□□ 0.48
PCDH1-203ENST00000394536 CHP1Q99653 195 aa18.07■□□□□ 0.48
PCDH1-203ENST00000394536 CPVLQ9H3G5 476 aa18.07■□□□□ 0.48
PCDH1-203ENST00000394536 CYP2D6P10635 497 aa18.07■□□□□ 0.48
PCDH1-203ENST00000394536 WHAMMP3Q1A5X7 153 aa18.07■□□□□ 0.48
PCDH1-203ENST00000394536 PARP10Q53GL7 1025 aa18.07■□□□□ 0.48
PCDH1-203ENST00000394536 SPTY2D1Q68D10 685 aaPredicted RBP18.07■□□□□ 0.48
PCDH1-203ENST00000394536 TFR2Q9UP52 801 aa18.07■□□□□ 0.48
PCDH1-203ENST00000394536 TMCO5BA8MYB1 307 aa18.06■□□□□ 0.48
PCDH1-203ENST00000394536 NR1I3Q14994 352 aa18.06■□□□□ 0.48
PCDH1-203ENST00000394536 LRP10Q7Z4F1 713 aa18.06■□□□□ 0.48
PCDH1-203ENST00000394536 NLRC4Q9NPP4 1024 aa18.06■□□□□ 0.48
PCDH1-203ENST00000394536 SMIM22K7EJ46 135 aa18.06■□□□□ 0.48
PCDH1-203ENST00000394536 TECP42680 631 aa18.06■□□□□ 0.48
PCDH1-203ENST00000394536 MAPKAPK5Q8IW41 473 aa18.06■□□□□ 0.48
PCDH1-203ENST00000394536 AFAP1L1Q8TED9 768 aa18.06■□□□□ 0.48
PCDH1-203ENST00000394536 ZNF287Q9HBT7 754 aa18.06■□□□□ 0.48
PCDH1-203ENST00000394536 H7C1D1 291 aa18.06■□□□□ 0.48
PCDH1-203ENST00000394536 PICALMQ13492 652 aa18.06■□□□□ 0.48
PCDH1-203ENST00000394536 CASP8Q14790 479 aa18.06■□□□□ 0.48
PCDH1-203ENST00000394536 RAB34Q9BZG1 259 aa18.06■□□□□ 0.48
PCDH1-203ENST00000394536 SLC39A2Q9NP94 309 aa18.06■□□□□ 0.48
PCDH1-203ENST00000394536 FAM217BQ9NTX9 383 aaPredicted RBP18.06■□□□□ 0.48
PCDH1-203ENST00000394536 TBC1D7Q9P0N9 293 aa18.06■□□□□ 0.48
PCDH1-203ENST00000394536 TRIM10Q9UDY6 481 aa18.06■□□□□ 0.48
PCDH1-203ENST00000394536 NRXN3Q9Y4C0 1643 aa18.06■□□□□ 0.48
PCDH1-203ENST00000394536 ATP8B1O43520 1251 aa18.05■□□□□ 0.48
PCDH1-203ENST00000394536 NDUFA10O95299 355 aa18.05■□□□□ 0.48
PCDH1-203ENST00000394536 MAATS1Q7Z4T9 603 aa18.05■□□□□ 0.48
PCDH1-203ENST00000394536 CABP7Q86V35 215 aa18.05■□□□□ 0.48
PCDH1-203ENST00000394536 MICALL1Q8N3F8 863 aa18.05■□□□□ 0.48
PCDH1-203ENST00000394536 BICDL2A1A5D9 508 aa18.05■□□□□ 0.48
PCDH1-203ENST00000394536 LDHBP07195 334 aaKnown RBP18.05■□□□□ 0.48
PCDH1-203ENST00000394536 CXCR5P32302 372 aa18.05■□□□□ 0.48
PCDH1-203ENST00000394536 ZNF579Q8NAF0 562 aaKnown RBP18.05■□□□□ 0.48
PCDH1-203ENST00000394536 TGFBRAP1Q8WUH2 860 aa18.05■□□□□ 0.48
PCDH1-203ENST00000394536 SECISBP2LQ93073 1101 aaKnown RBP18.05■□□□□ 0.48
PCDH1-203ENST00000394536 TUBGCP2Q9BSJ2 902 aa18.05■□□□□ 0.48
PCDH1-203ENST00000394536 FAM204AQ9H8W3 233 aa18.05■□□□□ 0.48
PCDH1-203ENST00000394536 C1orf167Q5SNV9 1468 aa18.05■□□□□ 0.48
PCDH1-203ENST00000394536 SLIT1O75093 1534 aa18.05■□□□□ 0.48
PCDH1-203ENST00000394536 CD44P16070 742 aaKnown RBP18.05■□□□□ 0.48
PCDH1-203ENST00000394536 CRKLP46109 303 aaKnown RBP18.05■□□□□ 0.48
PCDH1-203ENST00000394536 TUBB4BP68371 445 aa18.05■□□□□ 0.48
PCDH1-203ENST00000394536 ALX1Q15699 326 aa18.05■□□□□ 0.48
PCDH1-203ENST00000394536 PTPROQ16827 1216 aa18.05■□□□□ 0.48
PCDH1-203ENST00000394536 C6orf50Q9HD87 102 aa18.05■□□□□ 0.48
PCDH1-203ENST00000394536 STK36Q9NRP7 1315 aa18.05■□□□□ 0.48
PCDH1-203ENST00000394536 A0A0U1RQJ8 604 aa18.04■□□□□ 0.48
PCDH1-203ENST00000394536 PRPF3O43395 683 aaKnown RBP18.04■□□□□ 0.48
PCDH1-203ENST00000394536 ACTN4O43707 911 aaKnown RBP18.04■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 63.5 ms