RNA–Protein interactions for RNA: ENST00000393211.3

COL17A1-203, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL17A1, Length 1,610 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-203ENST00000393211 ARHGAP25P42331 645 aa11.27□□□□□ -0.6
COL17A1-203ENST00000393211 EIF5P55010 431 aaKnown RBP11.27□□□□□ -0.6
COL17A1-203ENST00000393211 ERVK-24P63145 666 aa11.27□□□□□ -0.6
COL17A1-203ENST00000393211 ST5P78524 1137 aa11.27□□□□□ -0.6
COL17A1-203ENST00000393211 AMPD2Q01433 879 aa11.27□□□□□ -0.6
COL17A1-203ENST00000393211 KCNJ12Q14500 433 aa11.27□□□□□ -0.6
COL17A1-203ENST00000393211 KCNB1Q14721 858 aa11.27□□□□□ -0.6
COL17A1-203ENST00000393211 ZNF174Q15697 407 aa11.27□□□□□ -0.6
COL17A1-203ENST00000393211 NPY5RQ15761 445 aa11.27□□□□□ -0.6
COL17A1-203ENST00000393211 EARS2Q5JPH6 523 aaKnown RBP11.27□□□□□ -0.6
COL17A1-203ENST00000393211 SUSD4Q5VX71 490 aa11.27□□□□□ -0.6
COL17A1-203ENST00000393211 CCDC148Q8NFR7 591 aa11.27□□□□□ -0.6
COL17A1-203ENST00000393211 NOC3LQ8WTT2 800 aaKnown RBP11.27□□□□□ -0.6
COL17A1-203ENST00000393211 NUP88Q99567 741 aaPredicted RBP11.27□□□□□ -0.6
COL17A1-203ENST00000393211 RIOK1Q9BRS2 568 aaKnown RBP11.27□□□□□ -0.6
COL17A1-203ENST00000393211 MED4Q9NPJ6 270 aa11.27□□□□□ -0.6
COL17A1-203ENST00000393211 SH3GLB2Q9NR46 395 aa11.27□□□□□ -0.6
COL17A1-203ENST00000393211 MYO6Q9UM54 1294 aa11.27□□□□□ -0.6
COL17A1-203ENST00000393211 PHLPP1O60346 1717 aa11.27□□□□□ -0.6
COL17A1-203ENST00000393211 CNTNAP5Q8WYK1 1306 aa11.27□□□□□ -0.6
COL17A1-203ENST00000393211 SLIT2O94813 1529 aa11.27□□□□□ -0.61
COL17A1-203ENST00000393211 FAM205CA6NFA0 338 aa11.27□□□□□ -0.61
COL17A1-203ENST00000393211 PSMD14O00487 310 aa11.27□□□□□ -0.61
COL17A1-203ENST00000393211 ACTN2P35609 894 aa11.27□□□□□ -0.61
COL17A1-203ENST00000393211 IRX5P78411 483 aaPredicted RBP11.27□□□□□ -0.61
COL17A1-203ENST00000393211 UBE4AQ14139 1066 aa11.27□□□□□ -0.61
COL17A1-203ENST00000393211 ZSCAN26Q16670 478 aa11.27□□□□□ -0.61
COL17A1-203ENST00000393211 MIGA1Q8NAN2 632 aa11.27□□□□□ -0.61
COL17A1-203ENST00000393211 OR8K1Q8NGG5 319 aa11.27□□□□□ -0.61
COL17A1-203ENST00000393211 CTCFLQ8NI51 663 aaPredicted RBP11.27□□□□□ -0.61
COL17A1-203ENST00000393211 FAM71BQ8TC56 605 aa11.27□□□□□ -0.61
COL17A1-203ENST00000393211 NELFBQ8WX92 580 aa11.27□□□□□ -0.61
COL17A1-203ENST00000393211 DNAJC7Q99615 494 aa11.27□□□□□ -0.61
COL17A1-203ENST00000393211 THAP9Q9H5L6 903 aa11.27□□□□□ -0.61
COL17A1-203ENST00000393211 ZCCHC17Q9NP64 241 aaKnown RBP11.27□□□□□ -0.61
COL17A1-203ENST00000393211 PUF60Q9UHX1 559 aaKnown RBP11.27□□□□□ -0.61
COL17A1-203ENST00000393211 EPN1Q9Y6I3 576 aaPredicted RBP11.27□□□□□ -0.61
COL17A1-203ENST00000393211 CICQ96RK0 1608 aaPredicted RBP11.27□□□□□ -0.61
COL17A1-203ENST00000393211 PDS5AQ29RF7 1337 aaKnown RBP11.26□□□□□ -0.61
COL17A1-203ENST00000393211 CACNA1SQ13698 1873 aa11.26□□□□□ -0.61
COL17A1-203ENST00000393211 MYH13Q9UKX3 1938 aa11.26□□□□□ -0.61
COL17A1-203ENST00000393211 TARSL2A2RTX5 802 aaKnown RBP11.26□□□□□ -0.61
COL17A1-203ENST00000393211 H3BQF6 201 aa11.26□□□□□ -0.61
COL17A1-203ENST00000393211 ZBTB22O15209 634 aa11.26□□□□□ -0.61
COL17A1-203ENST00000393211 PLEKHA8P1O95397 391 aa11.26□□□□□ -0.61
COL17A1-203ENST00000393211 RPN1P04843 607 aaKnown RBP11.26□□□□□ -0.61
COL17A1-203ENST00000393211 SCG2P13521 617 aa11.26□□□□□ -0.61
COL17A1-203ENST00000393211 KRT9P35527 623 aa11.26□□□□□ -0.61
COL17A1-203ENST00000393211 PPP1R2P41236 205 aa11.26□□□□□ -0.61
COL17A1-203ENST00000393211 KRT83P78385 493 aa11.26□□□□□ -0.61
COL17A1-203ENST00000393211 CHRNDQ07001 517 aa11.26□□□□□ -0.61
COL17A1-203ENST00000393211 PFKFB3Q16875 520 aaPredicted RBP11.26□□□□□ -0.61
COL17A1-203ENST00000393211 TSR1Q2NL82 804 aaKnown RBP11.26□□□□□ -0.61
COL17A1-203ENST00000393211 MAP9Q49MG5 647 aa11.26□□□□□ -0.61
COL17A1-203ENST00000393211 WWC2Q6AWC2 1192 aa11.26□□□□□ -0.61
COL17A1-203ENST00000393211 RETREG2Q8NC44 543 aa11.26□□□□□ -0.61
COL17A1-203ENST00000393211 NEK11Q8NG66 645 aa11.26□□□□□ -0.61
COL17A1-203ENST00000393211 IQCDQ96DY2 449 aa11.26□□□□□ -0.61
COL17A1-203ENST00000393211 PNKPQ96T60 521 aa11.26□□□□□ -0.61
COL17A1-203ENST00000393211 NUP58Q9BVL2 599 aa11.26□□□□□ -0.61
COL17A1-203ENST00000393211 ABCB6Q9NP58 842 aa11.26□□□□□ -0.61
COL17A1-203ENST00000393211 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.26□□□□□ -0.61
COL17A1-203ENST00000393211 MYH8P13535 1937 aa11.26□□□□□ -0.61
COL17A1-203ENST00000393211 LGALS16A8MUM7 142 aa11.25□□□□□ -0.61
COL17A1-203ENST00000393211 NDUFA10O95299 355 aa11.25□□□□□ -0.61
COL17A1-203ENST00000393211 KIF5BP33176 963 aa11.25□□□□□ -0.61
COL17A1-203ENST00000393211 NLRP5P59047 1200 aa11.25□□□□□ -0.61
COL17A1-203ENST00000393211 CKAP4Q07065 602 aaKnown RBP11.25□□□□□ -0.61
COL17A1-203ENST00000393211 STIM1Q13586 685 aa11.25□□□□□ -0.61
COL17A1-203ENST00000393211 HSP90B2PQ58FF3 399 aa11.25□□□□□ -0.61
COL17A1-203ENST00000393211 GALNT17Q6IS24 598 aa11.25□□□□□ -0.61
COL17A1-203ENST00000393211 LEKR1Q6ZMV7 388 aa11.25□□□□□ -0.61
COL17A1-203ENST00000393211 TRAPPC11Q7Z392 1133 aa11.25□□□□□ -0.61
COL17A1-203ENST00000393211 ADSSL1Q8N142 457 aa11.25□□□□□ -0.61
COL17A1-203ENST00000393211 MB21D1Q8N884 522 aa11.25□□□□□ -0.61
COL17A1-203ENST00000393211 ACRBPQ8NEB7 543 aa11.25□□□□□ -0.61
COL17A1-203ENST00000393211 SDR42E1Q8WUS8 393 aa11.25□□□□□ -0.61
COL17A1-203ENST00000393211 MAGEF1Q9HAY2 307 aa11.25□□□□□ -0.61
COL17A1-203ENST00000393211 PDE11AQ9HCR9 933 aa11.25□□□□□ -0.61
COL17A1-203ENST00000393211 SLAIN2Q9P270 581 aa11.25□□□□□ -0.61
COL17A1-203ENST00000393211 CAPN11Q9UMQ6 739 aa11.25□□□□□ -0.61
COL17A1-203ENST00000393211 LUC7L2Q9Y383 392 aaKnown RBP11.25□□□□□ -0.61
COL17A1-203ENST00000393211 A0A1B0GUL6 1792 aa11.24□□□□□ -0.61
COL17A1-203ENST00000393211 LAMB1P07942 1786 aa11.24□□□□□ -0.61
COL17A1-203ENST00000393211 LAD1O00515 517 aa11.24□□□□□ -0.61
COL17A1-203ENST00000393211 PRDM1O75626 825 aa11.24□□□□□ -0.61
COL17A1-203ENST00000393211 PARP1P09874 1014 aaKnown RBP11.24□□□□□ -0.61
COL17A1-203ENST00000393211 CCT6AP40227 531 aaKnown RBP11.24□□□□□ -0.61
COL17A1-203ENST00000393211 AARSP49588 968 aaKnown RBP eCLIP11.24□□□□□ -0.61
COL17A1-203ENST00000393211 DNM2P50570 870 aa11.24□□□□□ -0.61
COL17A1-203ENST00000393211 UBXN1Q04323 297 aa11.24□□□□□ -0.61
COL17A1-203ENST00000393211 RAD51AP2Q09MP3 1159 aa11.24□□□□□ -0.61
COL17A1-203ENST00000393211 CASP8Q14790 479 aa11.24□□□□□ -0.61
COL17A1-203ENST00000393211 SBK1Q52WX2 424 aa11.24□□□□□ -0.61
COL17A1-203ENST00000393211 PAPD7Q5XG87 772 aaKnown RBP11.24□□□□□ -0.61
COL17A1-203ENST00000393211 ADGRA1Q86SQ6 560 aa11.24□□□□□ -0.61
COL17A1-203ENST00000393211 SMYD4Q8IYR2 804 aaPredicted RBP11.24□□□□□ -0.61
COL17A1-203ENST00000393211 C4orf32Q8N8J7 132 aa11.24□□□□□ -0.61
COL17A1-203ENST00000393211 RUBCNQ92622 972 aa11.24□□□□□ -0.61
COL17A1-203ENST00000393211 VPS16Q9H269 839 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 64.9 ms