RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 UFL1O94874 794 aa15.24■□□□□ 0.03
CCDC3-202ENST00000378839 GRM4Q14833 912 aa15.24■□□□□ 0.03
CCDC3-202ENST00000378839 WWC2Q6AWC2 1192 aa15.24■□□□□ 0.03
CCDC3-202ENST00000378839 CCDC112Q8NEF3 446 aa15.24■□□□□ 0.03
CCDC3-202ENST00000378839 NAV1Q8NEY1 1877 aa15.24■□□□□ 0.03
CCDC3-202ENST00000378839 SPDYE4A6NLX3 237 aa15.24■□□□□ 0.03
CCDC3-202ENST00000378839 DDR1Q08345 913 aa15.24■□□□□ 0.03
CCDC3-202ENST00000378839 C15orf52Q6ZUT6 534 aaKnown RBP15.24■□□□□ 0.03
CCDC3-202ENST00000378839 LRRC15Q8TF66 581 aa15.24■□□□□ 0.03
CCDC3-202ENST00000378839 MAP7D2Q96T17 732 aa15.24■□□□□ 0.03
CCDC3-202ENST00000378839 TMEM47Q9BQJ4 181 aa15.24■□□□□ 0.03
CCDC3-202ENST00000378839 HOOK1Q9UJC3 728 aaKnown RBP15.24■□□□□ 0.03
CCDC3-202ENST00000378839 TEX33O43247 280 aa15.23■□□□□ 0.03
CCDC3-202ENST00000378839 BTDP43251 543 aa15.23■□□□□ 0.03
CCDC3-202ENST00000378839 SEPT12Q8IYM1 358 aa15.23■□□□□ 0.03
CCDC3-202ENST00000378839 TRIML1Q8N9V2 468 aa15.23■□□□□ 0.03
CCDC3-202ENST00000378839 NOL12Q9UGY1 213 aaKnown RBP eCLIP15.23■□□□□ 0.03
CCDC3-202ENST00000378839 ZNF215Q9UL58 517 aaPredicted RBP15.23■□□□□ 0.03
CCDC3-202ENST00000378839 V9GYY5 206 aaPredicted RBP15.23■□□□□ 0.03
CCDC3-202ENST00000378839 NR1I3Q14994 352 aa15.23■□□□□ 0.03
CCDC3-202ENST00000378839 KLHL10Q6JEL2 608 aa15.23■□□□□ 0.03
CCDC3-202ENST00000378839 ZNF804AQ7Z570 1209 aa15.23■□□□□ 0.03
CCDC3-202ENST00000378839 TC2NQ8N9U0 490 aa15.23■□□□□ 0.03
CCDC3-202ENST00000378839 MKNK2Q9HBH9 465 aa15.23■□□□□ 0.03
CCDC3-202ENST00000378839 PSDA5PKW4 1024 aaPredicted RBP15.22■□□□□ 0.03
CCDC3-202ENST00000378839 ONECUT3O60422 494 aaPredicted RBP15.22■□□□□ 0.03
CCDC3-202ENST00000378839 SERPINB2P05120 415 aa15.22■□□□□ 0.03
CCDC3-202ENST00000378839 TOP1P11387 765 aaKnown RBP15.22■□□□□ 0.03
CCDC3-202ENST00000378839 ADKP55263 362 aaKnown RBP15.22■□□□□ 0.03
CCDC3-202ENST00000378839 RHBDL3P58872 404 aa15.22■□□□□ 0.03
CCDC3-202ENST00000378839 KANK3Q6NY19 840 aa15.22■□□□□ 0.03
CCDC3-202ENST00000378839 BLIDQ8IZY5 108 aa15.22■□□□□ 0.03
CCDC3-202ENST00000378839 TMEM60Q9H2L4 133 aa15.22■□□□□ 0.03
CCDC3-202ENST00000378839 BRMS1Q9HCU9 246 aa15.22■□□□□ 0.03
CCDC3-202ENST00000378839 PCDHA6Q9UN73 950 aa15.22■□□□□ 0.03
CCDC3-202ENST00000378839 PCDHA8Q9Y5H6 950 aa15.22■□□□□ 0.03
CCDC3-202ENST00000378839 PP2D1A8MPX8 630 aa15.22■□□□□ 0.03
CCDC3-202ENST00000378839 CBFA2T2O43439 604 aa15.22■□□□□ 0.03
CCDC3-202ENST00000378839 IL1R1P14778 569 aa15.22■□□□□ 0.03
CCDC3-202ENST00000378839 SYT10Q6XYQ8 523 aa15.22■□□□□ 0.03
CCDC3-202ENST00000378839 REXO1L1PQ8IX06 675 aa15.22■□□□□ 0.03
CCDC3-202ENST00000378839 PALM3A6NDB9 673 aaPredicted RBP15.22■□□□□ 0.03
CCDC3-202ENST00000378839 TSPY3P0CV98 308 aa15.22■□□□□ 0.03
CCDC3-202ENST00000378839 TSPY8P0CW00 308 aa15.22■□□□□ 0.03
CCDC3-202ENST00000378839 KCNJ6P48051 423 aa15.22■□□□□ 0.03
CCDC3-202ENST00000378839 TRIM65Q6PJ69 517 aa15.22■□□□□ 0.03
CCDC3-202ENST00000378839 RPGRQ92834 1020 aaKnown RBP15.22■□□□□ 0.03
CCDC3-202ENST00000378839 PCDHA4Q9UN74 947 aa15.22■□□□□ 0.03
CCDC3-202ENST00000378839 GPR75-ASB3A0A0A6YYF3 556 aa15.21■□□□□ 0.03
CCDC3-202ENST00000378839 STXBP3O00186 592 aa15.21■□□□□ 0.03
CCDC3-202ENST00000378839 ZNF772Q68DY9 489 aaPredicted RBP15.21■□□□□ 0.03
CCDC3-202ENST00000378839 TCP11L1Q9NUJ3 509 aa15.21■□□□□ 0.03
CCDC3-202ENST00000378839 ERCC5P28715 1186 aaPredicted RBP15.21■□□□□ 0.03
CCDC3-202ENST00000378839 KIF5BP33176 963 aa15.21■□□□□ 0.03
CCDC3-202ENST00000378839 CDK8P49336 464 aa15.21■□□□□ 0.03
CCDC3-202ENST00000378839 PPP4R3BQ5MIZ7 849 aa15.21■□□□□ 0.03
CCDC3-202ENST00000378839 STX8Q9UNK0 236 aa15.21■□□□□ 0.03
CCDC3-202ENST00000378839 FLT1P17948 1338 aa15.21■□□□□ 0.02
CCDC3-202ENST00000378839 MYO1BO43795 1136 aa15.2■□□□□ 0.02
CCDC3-202ENST00000378839 TBC1D16Q8TBP0 767 aa15.2■□□□□ 0.02
CCDC3-202ENST00000378839 QTRT2Q9H974 415 aaKnown RBP15.2■□□□□ 0.02
CCDC3-202ENST00000378839 A0A1B0GTH6 734 aa15.2■□□□□ 0.02
CCDC3-202ENST00000378839 BAG3O95817 575 aa15.2■□□□□ 0.02
CCDC3-202ENST00000378839 CDKAL1Q5VV42 579 aa15.2■□□□□ 0.02
CCDC3-202ENST00000378839 CDK11BP21127 795 aaKnown RBP15.2■□□□□ 0.02
CCDC3-202ENST00000378839 TRAPPC10P48553 1259 aa15.2■□□□□ 0.02
CCDC3-202ENST00000378839 GSTO1P78417 241 aa15.2■□□□□ 0.02
CCDC3-202ENST00000378839 NAALADL2Q58DX5 795 aa15.2■□□□□ 0.02
CCDC3-202ENST00000378839 TMED8Q6PL24 325 aaPredicted RBP15.2■□□□□ 0.02
CCDC3-202ENST00000378839 TOGARAM2Q6ZUX3 1019 aa15.2■□□□□ 0.02
CCDC3-202ENST00000378839 CCDC94Q9BW85 323 aaPredicted RBP15.2■□□□□ 0.02
CCDC3-202ENST00000378839 LTBP1Q14766 1721 aa15.19■□□□□ 0.02
CCDC3-202ENST00000378839 BMP15O95972 392 aa15.19■□□□□ 0.02
CCDC3-202ENST00000378839 KARSQ15046 597 aaKnown RBP15.19■□□□□ 0.02
CCDC3-202ENST00000378839 INF2Q27J81 1249 aa15.19■□□□□ 0.02
CCDC3-202ENST00000378839 CCDC93Q567U6 631 aa15.19■□□□□ 0.02
CCDC3-202ENST00000378839 SPECC1LQ69YQ0 1117 aa15.19■□□□□ 0.02
CCDC3-202ENST00000378839 USP17L2Q6R6M4 530 aa15.19■□□□□ 0.02
CCDC3-202ENST00000378839 C16orf86Q6ZW13 317 aa15.19■□□□□ 0.02
CCDC3-202ENST00000378839 HEATR3Q7Z4Q2 680 aa15.19■□□□□ 0.02
CCDC3-202ENST00000378839 MTERF4Q7Z6M4 381 aaKnown RBP15.19■□□□□ 0.02
CCDC3-202ENST00000378839 ZNF444Q8N0Y2 327 aaPredicted RBP15.19■□□□□ 0.02
CCDC3-202ENST00000378839 PDCL2Q8N4E4 241 aa15.19■□□□□ 0.02
CCDC3-202ENST00000378839 GGA1Q9UJY5 639 aa15.19■□□□□ 0.02
CCDC3-202ENST00000378839 MFSD14BQ5SR56 506 aa15.19■□□□□ 0.02
CCDC3-202ENST00000378839 SPATA1Q5VX52 437 aa15.19■□□□□ 0.02
CCDC3-202ENST00000378839 TEX11Q8IYF3 940 aa15.19■□□□□ 0.02
CCDC3-202ENST00000378839 PROM2Q8N271 834 aa15.19■□□□□ 0.02
CCDC3-202ENST00000378839 KIF18AQ8NI77 898 aa15.19■□□□□ 0.02
CCDC3-202ENST00000378839 GSDMAQ96QA5 445 aa15.19■□□□□ 0.02
CCDC3-202ENST00000378839 SH3GLB2Q9NR46 395 aa15.19■□□□□ 0.02
CCDC3-202ENST00000378839 POLRMTO00411 1230 aaKnown RBP15.18■□□□□ 0.02
CCDC3-202ENST00000378839 PBX1P40424 430 aa15.18■□□□□ 0.02
CCDC3-202ENST00000378839 MTF1Q14872 753 aa15.18■□□□□ 0.02
CCDC3-202ENST00000378839 EYA3Q99504 573 aa15.18■□□□□ 0.02
CCDC3-202ENST00000378839 MXD3Q9BW11 206 aa15.18■□□□□ 0.02
CCDC3-202ENST00000378839 BARHL2Q9NY43 387 aa15.18■□□□□ 0.02
CCDC3-202ENST00000378839 DACH1Q9UI36 760 aa15.18■□□□□ 0.02
CCDC3-202ENST00000378839 CTNND2Q9UQB3 1225 aa15.18■□□□□ 0.02
CCDC3-202ENST00000378839 SYNRGQ9UMZ2 1314 aa15.18■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms