RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 C1QTNF9P0C862 333 aa3.91□□□□□ -1.78
VPS13A-206ENST00000376646 RPL10P27635 214 aaKnown RBP3.91□□□□□ -1.78
VPS13A-206ENST00000376646 NLRC3Q7RTR2 1065 aa3.91□□□□□ -1.78
VPS13A-206ENST00000376646 HOMEZQ8IX15 550 aa3.91□□□□□ -1.78
VPS13A-206ENST00000376646 SIRT2Q8IXJ6 389 aa3.91□□□□□ -1.78
VPS13A-206ENST00000376646 USHBP1Q8N6Y0 703 aa3.91□□□□□ -1.78
VPS13A-206ENST00000376646 NKD1Q969G9 470 aa3.91□□□□□ -1.78
VPS13A-206ENST00000376646 HDAC8Q9BY41 377 aa3.91□□□□□ -1.78
VPS13A-206ENST00000376646 CNNM2Q9H8M5 875 aa3.91□□□□□ -1.78
VPS13A-206ENST00000376646 DCP1AQ9NPI6 582 aaPredicted RBP3.91□□□□□ -1.78
VPS13A-206ENST00000376646 ROBO2Q9HCK4 1378 aa3.9□□□□□ -1.78
VPS13A-206ENST00000376646 ZBTB7CA1YPR0 619 aa3.9□□□□□ -1.79
VPS13A-206ENST00000376646 DBX1A6NMT0 343 aa3.9□□□□□ -1.79
VPS13A-206ENST00000376646 USP2O75604 605 aaPredicted RBP3.9□□□□□ -1.79
VPS13A-206ENST00000376646 PRAMEF1O95521 474 aa3.9□□□□□ -1.79
VPS13A-206ENST00000376646 ZNF76P36508 570 aa3.9□□□□□ -1.79
VPS13A-206ENST00000376646 FANCCQ00597 558 aa3.9□□□□□ -1.79
VPS13A-206ENST00000376646 MLECQ14165 292 aa3.9□□□□□ -1.79
VPS13A-206ENST00000376646 NBPF9Q3BBW0 867 aa3.9□□□□□ -1.79
VPS13A-206ENST00000376646 CDCP2Q5VXM1 449 aa3.9□□□□□ -1.79
VPS13A-206ENST00000376646 CILP2Q8IUL8 1156 aa3.9□□□□□ -1.79
VPS13A-206ENST00000376646 KIAA0825Q8IV33 1275 aa3.9□□□□□ -1.79
VPS13A-206ENST00000376646 TCTN2Q96GX1 697 aa3.9□□□□□ -1.79
VPS13A-206ENST00000376646 SLC9A7Q96T83 725 aa3.9□□□□□ -1.79
VPS13A-206ENST00000376646 G6PC3Q9BUM1 346 aa3.9□□□□□ -1.79
VPS13A-206ENST00000376646 PRDM14Q9GZV8 571 aa3.9□□□□□ -1.79
VPS13A-206ENST00000376646 ACRP10323 421 aa3.9□□□□□ -1.79
VPS13A-206ENST00000376646 RACK1P63244 317 aaKnown RBP3.9□□□□□ -1.79
VPS13A-206ENST00000376646 USP48Q86UV5 1035 aa3.9□□□□□ -1.79
VPS13A-206ENST00000376646 PDZD8Q8NEN9 1154 aa3.9□□□□□ -1.79
VPS13A-206ENST00000376646 CCDC120Q96HB5 630 aa3.9□□□□□ -1.79
VPS13A-206ENST00000376646 SLC6A18Q96N87 628 aa3.9□□□□□ -1.79
VPS13A-206ENST00000376646 FAM86C1Q9NVL1 165 aa3.9□□□□□ -1.79
VPS13A-206ENST00000376646 GPR160Q9UJ42 338 aa3.9□□□□□ -1.79
VPS13A-206ENST00000376646 TMEM82A0PJX8 343 aa3.89□□□□□ -1.79
VPS13A-206ENST00000376646 NOTOA8MTQ0 251 aa3.89□□□□□ -1.79
VPS13A-206ENST00000376646 CLEC3AO75596 197 aa3.89□□□□□ -1.79
VPS13A-206ENST00000376646 NME1P15531 152 aaKnown RBP3.89□□□□□ -1.79
VPS13A-206ENST00000376646 SDHBP21912 280 aa3.89□□□□□ -1.79
VPS13A-206ENST00000376646 ITGAEP38570 1179 aa3.89□□□□□ -1.79
VPS13A-206ENST00000376646 RAP1GAPP47736 663 aa3.89□□□□□ -1.79
VPS13A-206ENST00000376646 KIR3DS1Q14943 382 aa3.89□□□□□ -1.79
VPS13A-206ENST00000376646 RUFY4Q6ZNE9 571 aa3.89□□□□□ -1.79
VPS13A-206ENST00000376646 WAPLQ7Z5K2 1190 aa3.89□□□□□ -1.79
VPS13A-206ENST00000376646 SLITRK4Q8IW52 837 aa3.89□□□□□ -1.79
VPS13A-206ENST00000376646 NT5C1AQ9BXI3 368 aa3.89□□□□□ -1.79
VPS13A-206ENST00000376646 MKRN2Q9H000 416 aaKnown RBP3.89□□□□□ -1.79
VPS13A-206ENST00000376646 ASCC2Q9H1I8 757 aaPredicted RBP3.89□□□□□ -1.79
VPS13A-206ENST00000376646 EPB41L4BQ9H329 900 aa3.89□□□□□ -1.79
VPS13A-206ENST00000376646 TCFL5Q9UL49 500 aa3.89□□□□□ -1.79
VPS13A-206ENST00000376646 PPT2Q9UMR5 302 aa3.89□□□□□ -1.79
VPS13A-206ENST00000376646 C9IYK1 514 aa3.88□□□□□ -1.79
VPS13A-206ENST00000376646 SYPP08247 313 aa3.88□□□□□ -1.79
VPS13A-206ENST00000376646 ZNF165P49910 485 aa3.88□□□□□ -1.79
VPS13A-206ENST00000376646 BBS9Q3SYG4 887 aa3.88□□□□□ -1.79
VPS13A-206ENST00000376646 TDRD10Q5VZ19 366 aaKnown RBP3.88□□□□□ -1.79
VPS13A-206ENST00000376646 REXO1Q8N1G1 1221 aaKnown RBP3.88□□□□□ -1.79
VPS13A-206ENST00000376646 FBXO15Q8NCQ5 510 aaPredicted RBP3.88□□□□□ -1.79
VPS13A-206ENST00000376646 SYTL5Q8TDW5 730 aaPredicted RBP3.88□□□□□ -1.79
VPS13A-206ENST00000376646 LINC01599Q8WXQ3 324 aa3.88□□□□□ -1.79
VPS13A-206ENST00000376646 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP3.88□□□□□ -1.79
VPS13A-206ENST00000376646 GFOD1Q9NXC2 390 aa3.88□□□□□ -1.79
VPS13A-206ENST00000376646 ZMYM5Q9UJ78 669 aa3.88□□□□□ -1.79
VPS13A-206ENST00000376646 ETV2O00321 342 aaPredicted RBP3.88□□□□□ -1.79
VPS13A-206ENST00000376646 CFPP27918 469 aa3.88□□□□□ -1.79
VPS13A-206ENST00000376646 RNF4P78317 190 aa3.88□□□□□ -1.79
VPS13A-206ENST00000376646 ZYXQ15942 572 aaKnown RBP3.88□□□□□ -1.79
VPS13A-206ENST00000376646 C9orf131Q5VYM1 1079 aa3.88□□□□□ -1.79
VPS13A-206ENST00000376646 FBXW10Q5XX13 1052 aa3.88□□□□□ -1.79
VPS13A-206ENST00000376646 SPOCD1Q6ZMY3 1216 aa3.88□□□□□ -1.79
VPS13A-206ENST00000376646 ZNF605Q86T29 641 aa3.88□□□□□ -1.79
VPS13A-206ENST00000376646 OXR1Q8N573 874 aa3.88□□□□□ -1.79
VPS13A-206ENST00000376646 SHISA4Q96DD7 197 aa3.88□□□□□ -1.79
VPS13A-206ENST00000376646 ZNF281Q9Y2X9 895 aa3.88□□□□□ -1.79
VPS13A-206ENST00000376646 FITM1A5D6W6 292 aa3.87□□□□□ -1.79
VPS13A-206ENST00000376646 NPIPB6E9PJ23 425 aa3.87□□□□□ -1.79
VPS13A-206ENST00000376646 TSPAN15O95858 294 aa3.87□□□□□ -1.79
VPS13A-206ENST00000376646 RECKO95980 971 aa3.87□□□□□ -1.79
VPS13A-206ENST00000376646 CTSKP43235 329 aa3.87□□□□□ -1.79
VPS13A-206ENST00000376646 CCDC81Q6ZN84 652 aa3.87□□□□□ -1.79
VPS13A-206ENST00000376646 SGPP1Q9BX95 441 aa3.87□□□□□ -1.79
VPS13A-206ENST00000376646 FBXL21Q9UKT6 434 aa3.87□□□□□ -1.79
VPS13A-206ENST00000376646 MYOCOSA0A1B0GUC4 107 aa3.87□□□□□ -1.79
VPS13A-206ENST00000376646 MEIS3P2A8K0S8 358 aa3.87□□□□□ -1.79
VPS13A-206ENST00000376646 SIGLEC6O43699 453 aa3.87□□□□□ -1.79
VPS13A-206ENST00000376646 CRTC3Q6UUV7 619 aa3.87□□□□□ -1.79
VPS13A-206ENST00000376646 ATG14Q6ZNE5 492 aa3.87□□□□□ -1.79
VPS13A-206ENST00000376646 LCNL1Q6ZST4 164 aa3.87□□□□□ -1.79
VPS13A-206ENST00000376646 PPFIBP1Q86W92 1011 aa3.87□□□□□ -1.79
VPS13A-206ENST00000376646 C1QL4Q86Z23 238 aa3.87□□□□□ -1.79
VPS13A-206ENST00000376646 DAGLBQ8NCG7 672 aa3.87□□□□□ -1.79
VPS13A-206ENST00000376646 DHX38Q92620 1227 aaKnown RBP3.87□□□□□ -1.79
VPS13A-206ENST00000376646 SYTL4Q96C24 671 aaPredicted RBP3.87□□□□□ -1.79
VPS13A-206ENST00000376646 INTS4Q96HW7 963 aaKnown RBP3.87□□□□□ -1.79
VPS13A-206ENST00000376646 HHIPL1Q96JK4 782 aa3.87□□□□□ -1.79
VPS13A-206ENST00000376646 PLCD4Q9BRC7 762 aa3.87□□□□□ -1.79
VPS13A-206ENST00000376646 CHST7Q9NS84 486 aa3.87□□□□□ -1.79
VPS13A-206ENST00000376646 ZNRF3Q9ULT6 936 aa3.87□□□□□ -1.79
VPS13A-206ENST00000376646 TNFRSF10CO14798 259 aa3.86□□□□□ -1.79
VPS13A-206ENST00000376646 SHOXO15266 292 aa3.86□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms