RNA–Protein interactions for RNA: ENST00000374943.8

HLA-DQB1-201, Transcript of major histocompatibility complex, class II, DQ beta 1, humanhuman

BASIC

Gene HLA-DQB1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQB1-201ENST00000374943 TTC38Q5R3I4 469 aa20.61■□□□□ 0.89
HLA-DQB1-201ENST00000374943 WWC2Q6AWC2 1192 aa20.61■□□□□ 0.89
HLA-DQB1-201ENST00000374943 GPKOWQ92917 476 aaPredicted RBP eCLIP20.61■□□□□ 0.89
HLA-DQB1-201ENST00000374943 FAM13BQ9NYF5 915 aa20.61■□□□□ 0.89
HLA-DQB1-201ENST00000374943 ATRNL1Q5VV63 1379 aa20.61■□□□□ 0.89
HLA-DQB1-201ENST00000374943 COL4A5P29400 1685 aa20.61■□□□□ 0.89
HLA-DQB1-201ENST00000374943 PDHBP11177 359 aa20.61■□□□□ 0.89
HLA-DQB1-201ENST00000374943 C11orf57Q6ZUT1 292 aaPredicted RBP20.61■□□□□ 0.89
HLA-DQB1-201ENST00000374943 PIBF1Q8WXW3 757 aa20.61■□□□□ 0.89
HLA-DQB1-201ENST00000374943 FERMT2Q96AC1 680 aa20.61■□□□□ 0.89
HLA-DQB1-201ENST00000374943 SPON1Q9HCB6 807 aa20.61■□□□□ 0.89
HLA-DQB1-201ENST00000374943 RRAGDQ9NQL2 400 aaPredicted RBP20.61■□□□□ 0.89
HLA-DQB1-201ENST00000374943 PCDHAC2Q9Y5I4 1007 aa20.61■□□□□ 0.89
HLA-DQB1-201ENST00000374943 GOLGA8HP0CJ92 632 aa20.6■□□□□ 0.89
HLA-DQB1-201ENST00000374943 YY1P25490 414 aa20.6■□□□□ 0.89
HLA-DQB1-201ENST00000374943 RBM5P52756 815 aaKnown RBP eCLIP20.6■□□□□ 0.89
HLA-DQB1-201ENST00000374943 SOGA3Q5TF21 947 aa20.6■□□□□ 0.89
HLA-DQB1-201ENST00000374943 TYW1BQ6NUM6 668 aa20.6■□□□□ 0.89
HLA-DQB1-201ENST00000374943 USP17L2Q6R6M4 530 aa20.6■□□□□ 0.89
HLA-DQB1-201ENST00000374943 ZSCAN30Q86W11 494 aa20.6■□□□□ 0.89
HLA-DQB1-201ENST00000374943 ZFPM1Q8IX07 1006 aa20.6■□□□□ 0.89
HLA-DQB1-201ENST00000374943 PI4KBQ9UBF8 816 aa20.6■□□□□ 0.89
HLA-DQB1-201ENST00000374943 TUBE1Q9UJT0 475 aa20.6■□□□□ 0.89
HLA-DQB1-201ENST00000374943 hCG_1984214I3L0E3 225 aa20.59■□□□□ 0.89
HLA-DQB1-201ENST00000374943 AP5Z1O43299 807 aa20.59■□□□□ 0.89
HLA-DQB1-201ENST00000374943 ENTPD3O75355 529 aa20.59■□□□□ 0.89
HLA-DQB1-201ENST00000374943 ATP2C1P98194 919 aaPredicted RBP20.59■□□□□ 0.89
HLA-DQB1-201ENST00000374943 GRIN1Q05586 938 aa20.59■□□□□ 0.89
HLA-DQB1-201ENST00000374943 NOM1Q5C9Z4 860 aaKnown RBP20.59■□□□□ 0.89
HLA-DQB1-201ENST00000374943 KRBA2Q6ZNG9 492 aa20.59■□□□□ 0.89
HLA-DQB1-201ENST00000374943 RASGRP2Q7LDG7 609 aa20.59■□□□□ 0.89
HLA-DQB1-201ENST00000374943 METTL16Q86W50 562 aaKnown RBP20.59■□□□□ 0.89
HLA-DQB1-201ENST00000374943 CEP57L1Q8IYX8 460 aa20.59■□□□□ 0.89
HLA-DQB1-201ENST00000374943 ZNF713Q8N859 430 aaPredicted RBP20.59■□□□□ 0.89
HLA-DQB1-201ENST00000374943 CCDC12Q8WUD4 166 aaPredicted RBP20.59■□□□□ 0.89
HLA-DQB1-201ENST00000374943 RIOX1Q9H6W3 641 aa20.59■□□□□ 0.89
HLA-DQB1-201ENST00000374943 DNAJC18Q9H819 358 aa20.59■□□□□ 0.89
HLA-DQB1-201ENST00000374943 PPP1R1BQ9UD71 204 aaPredicted RBP20.59■□□□□ 0.89
HLA-DQB1-201ENST00000374943 USP17L5A8MUK1 530 aa20.58■□□□□ 0.89
HLA-DQB1-201ENST00000374943 ATP2B1P20020 1258 aa20.58■□□□□ 0.89
HLA-DQB1-201ENST00000374943 CFAP100Q494V2 611 aa20.58■□□□□ 0.89
HLA-DQB1-201ENST00000374943 RSBN1LQ6PCB5 846 aaPredicted RBP20.58■□□□□ 0.89
HLA-DQB1-201ENST00000374943 PIK3AP1Q6ZUJ8 805 aa20.58■□□□□ 0.89
HLA-DQB1-201ENST00000374943 RRP36Q96EU6 259 aaKnown RBP20.58■□□□□ 0.89
HLA-DQB1-201ENST00000374943 BPIFA3Q9BQP9 254 aa20.58■□□□□ 0.89
HLA-DQB1-201ENST00000374943 NAT10Q9H0A0 1025 aaKnown RBP20.58■□□□□ 0.89
HLA-DQB1-201ENST00000374943 MTMR7Q9Y216 660 aa20.58■□□□□ 0.89
HLA-DQB1-201ENST00000374943 WNT7AO00755 349 aa20.58■□□□□ 0.88
HLA-DQB1-201ENST00000374943 SH3BP5LQ7L8J4 393 aa20.58■□□□□ 0.88
HLA-DQB1-201ENST00000374943 HEATR3Q7Z4Q2 680 aa20.58■□□□□ 0.88
HLA-DQB1-201ENST00000374943 ZMYND12Q9H0C1 365 aa20.58■□□□□ 0.88
HLA-DQB1-201ENST00000374943 DDTLA6NHG4 134 aaPredicted RBP20.57■□□□□ 0.88
HLA-DQB1-201ENST00000374943 ADAMTS3O15072 1205 aa20.57■□□□□ 0.88
HLA-DQB1-201ENST00000374943 VIL1P09327 827 aaKnown RBP20.57■□□□□ 0.88
HLA-DQB1-201ENST00000374943 CACNB3P54284 484 aa20.57■□□□□ 0.88
HLA-DQB1-201ENST00000374943 NLRP12P59046 1061 aa20.57■□□□□ 0.88
HLA-DQB1-201ENST00000374943 TGFB2P61812 414 aa20.57■□□□□ 0.88
HLA-DQB1-201ENST00000374943 TATDN1Q6P1N9 297 aa20.57■□□□□ 0.88
HLA-DQB1-201ENST00000374943 FOXP4Q8IVH2 680 aaPredicted RBP20.57■□□□□ 0.88
HLA-DQB1-201ENST00000374943 ERCC4Q92889 916 aaPredicted RBP20.57■□□□□ 0.88
HLA-DQB1-201ENST00000374943 GMLQ99445 158 aa20.57■□□□□ 0.88
HLA-DQB1-201ENST00000374943 CSRNP2Q9H175 543 aa20.57■□□□□ 0.88
HLA-DQB1-201ENST00000374943 SEC63Q9UGP8 760 aaKnown RBP20.57■□□□□ 0.88
HLA-DQB1-201ENST00000374943 ESYT2A0FGR8 921 aa20.56■□□□□ 0.88
HLA-DQB1-201ENST00000374943 ZRSR1Q15695 479 aaKnown RBP20.56■□□□□ 0.88
HLA-DQB1-201ENST00000374943 LONRF3Q496Y0 759 aa20.56■□□□□ 0.88
HLA-DQB1-201ENST00000374943 LRRC47Q8N1G4 583 aaKnown RBP20.56■□□□□ 0.88
HLA-DQB1-201ENST00000374943 LARGE2Q8N3Y3 721 aa20.56■□□□□ 0.88
HLA-DQB1-201ENST00000374943 CNNM3Q8NE01 707 aa20.56■□□□□ 0.88
HLA-DQB1-201ENST00000374943 CLIP2Q9UDT6 1046 aa20.56■□□□□ 0.88
HLA-DQB1-201ENST00000374943 HOOK1Q9UJC3 728 aaKnown RBP20.56■□□□□ 0.88
HLA-DQB1-201ENST00000374943 PCDHA6Q9UN73 950 aa20.56■□□□□ 0.88
HLA-DQB1-201ENST00000374943 PCDHA8Q9Y5H6 950 aa20.56■□□□□ 0.88
HLA-DQB1-201ENST00000374943 ZNF543Q08ER8 600 aa20.55■□□□□ 0.88
HLA-DQB1-201ENST00000374943 TCP10Q12799 353 aa20.55■□□□□ 0.88
HLA-DQB1-201ENST00000374943 ZNF174Q15697 407 aa20.55■□□□□ 0.88
HLA-DQB1-201ENST00000374943 SARM1Q6SZW1 724 aa20.55■□□□□ 0.88
HLA-DQB1-201ENST00000374943 DHX40Q8IX18 779 aaKnown RBP20.55■□□□□ 0.88
HLA-DQB1-201ENST00000374943 GOLGA6L19H0YKK7 550 aa20.54■□□□□ 0.88
HLA-DQB1-201ENST00000374943 CLCN1P35523 988 aa20.54■□□□□ 0.88
HLA-DQB1-201ENST00000374943 PTGDRQ13258 359 aa20.54■□□□□ 0.88
HLA-DQB1-201ENST00000374943 SPECC1Q5M775 1068 aa20.54■□□□□ 0.88
HLA-DQB1-201ENST00000374943 ARL6IP4Q66PJ3 421 aaKnown RBP20.54■□□□□ 0.88
HLA-DQB1-201ENST00000374943 MKL1Q969V6 931 aa20.54■□□□□ 0.88
HLA-DQB1-201ENST00000374943 CPVLQ9H3G5 476 aa20.54■□□□□ 0.88
HLA-DQB1-201ENST00000374943 TDRD3Q9H7E2 651 aaKnown RBP20.54■□□□□ 0.88
HLA-DQB1-201ENST00000374943 CCDC194A0A1B0GVG4 234 aa20.54■□□□□ 0.88
HLA-DQB1-201ENST00000374943 PTMAP06454 111 aaKnown RBP20.54■□□□□ 0.88
HLA-DQB1-201ENST00000374943 GNA11P29992 359 aa20.54■□□□□ 0.88
HLA-DQB1-201ENST00000374943 NAPAP54920 295 aa20.54■□□□□ 0.88
HLA-DQB1-201ENST00000374943 MDM2Q00987 491 aaPredicted RBP20.54■□□□□ 0.88
HLA-DQB1-201ENST00000374943 DPCR1Q3MIW9 517 aa20.54■□□□□ 0.88
HLA-DQB1-201ENST00000374943 GPATCH4Q5T3I0 446 aaKnown RBP20.54■□□□□ 0.88
HLA-DQB1-201ENST00000374943 KANK3Q6NY19 840 aa20.54■□□□□ 0.88
HLA-DQB1-201ENST00000374943 CLEC10AQ8IUN9 316 aa20.54■□□□□ 0.88
HLA-DQB1-201ENST00000374943 PRMT6Q96LA8 375 aaPredicted RBP20.54■□□□□ 0.88
HLA-DQB1-201ENST00000374943 PIGSQ96S52 555 aa20.54■□□□□ 0.88
HLA-DQB1-201ENST00000374943 C6orf50Q9HD87 102 aa20.54■□□□□ 0.88
HLA-DQB1-201ENST00000374943 ZNF277Q9NRM2 450 aaPredicted RBP20.54■□□□□ 0.88
HLA-DQB1-201ENST00000374943 NYAP2Q9P242 653 aa20.54■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms