RNA–Protein interactions for RNA: ENST00000368531.6

TPM3-211, Transcript of tropomyosin 3, humanhuman

TSL 1 (best) BASIC

Gene TPM3, Length 1,115 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-211ENST00000368531 USP17L13C9JLJ4 530 aa16.27■□□□□ 0.2
TPM3-211ENST00000368531 USP17L11C9JVI0 530 aa16.27■□□□□ 0.2
TPM3-211ENST00000368531 USP17L18D6R9N7 530 aa16.27■□□□□ 0.2
TPM3-211ENST00000368531 USP17L22D6RA61 530 aa16.27■□□□□ 0.2
TPM3-211ENST00000368531 USP17L17D6RBQ6 530 aa16.27■□□□□ 0.2
TPM3-211ENST00000368531 USP17L19D6RCP7 530 aa16.27■□□□□ 0.2
TPM3-211ENST00000368531 USP17L20D6RJB6 530 aa16.27■□□□□ 0.2
TPM3-211ENST00000368531 WDR46O15213 610 aaKnown RBP16.27■□□□□ 0.2
TPM3-211ENST00000368531 TBC1D8O95759 1140 aa16.27■□□□□ 0.2
TPM3-211ENST00000368531 BMP3P12645 472 aa16.27■□□□□ 0.2
TPM3-211ENST00000368531 RBM25P49756 843 aaKnown RBP16.27■□□□□ 0.2
TPM3-211ENST00000368531 MAP2K1Q02750 393 aaPredicted RBP16.27■□□□□ 0.2
TPM3-211ENST00000368531 USP17L24Q0WX57 530 aa16.27■□□□□ 0.2
TPM3-211ENST00000368531 PABPC4Q13310 644 aaKnown RBP eCLIP16.27■□□□□ 0.2
TPM3-211ENST00000368531 NUP133Q8WUM0 1156 aa16.27■□□□□ 0.2
TPM3-211ENST00000368531 MTA3Q9BTC8 594 aa16.27■□□□□ 0.2
TPM3-211ENST00000368531 BEGAINQ9BUH8 593 aa16.27■□□□□ 0.2
TPM3-211ENST00000368531 ASCC2Q9H1I8 757 aaPredicted RBP16.27■□□□□ 0.2
TPM3-211ENST00000368531 FBXO28Q9NVF7 368 aa16.27■□□□□ 0.2
TPM3-211ENST00000368531 SYNPO2Q9UMS6 1093 aa16.27■□□□□ 0.2
TPM3-211ENST00000368531 FLOT1O75955 427 aa16.26■□□□□ 0.19
TPM3-211ENST00000368531 GOLGA8HP0CJ92 632 aa16.26■□□□□ 0.19
TPM3-211ENST00000368531 PDHBP11177 359 aa16.26■□□□□ 0.19
TPM3-211ENST00000368531 RXRAP19793 462 aa16.26■□□□□ 0.19
TPM3-211ENST00000368531 NEK4P51957 841 aa16.26■□□□□ 0.19
TPM3-211ENST00000368531 APOBRQ0VD83 1088 aa16.26■□□□□ 0.19
TPM3-211ENST00000368531 IKQ13123 557 aaPredicted RBP16.26■□□□□ 0.19
TPM3-211ENST00000368531 TTBK2Q6IQ55 1244 aa16.26■□□□□ 0.19
TPM3-211ENST00000368531 CATSPERGQ6ZRH7 1159 aa16.26■□□□□ 0.19
TPM3-211ENST00000368531 CATIPQ7Z7H3 387 aa16.26■□□□□ 0.19
TPM3-211ENST00000368531 ZNF654Q8IZM8 581 aa16.26■□□□□ 0.19
TPM3-211ENST00000368531 TMTC2Q8N394 836 aa16.26■□□□□ 0.19
TPM3-211ENST00000368531 BRF1Q92994 677 aa16.26■□□□□ 0.19
TPM3-211ENST00000368531 TBC1D32Q96NH3 1257 aa16.26■□□□□ 0.19
TPM3-211ENST00000368531 P2RX7Q99572 595 aaKnown RBP16.26■□□□□ 0.19
TPM3-211ENST00000368531 TSKSQ9UJT2 592 aa16.26■□□□□ 0.19
TPM3-211ENST00000368531 PARP14Q460N5 1801 aa16.26■□□□□ 0.19
TPM3-211ENST00000368531 TMEM232C9JQI7 657 aa16.25■□□□□ 0.19
TPM3-211ENST00000368531 ALDH1A1P00352 501 aa16.25■□□□□ 0.19
TPM3-211ENST00000368531 HOXA7P31268 230 aaPredicted RBP16.25■□□□□ 0.19
TPM3-211ENST00000368531 LIFRP42702 1097 aa16.25■□□□□ 0.19
TPM3-211ENST00000368531 CRHR2Q13324 411 aa16.25■□□□□ 0.19
TPM3-211ENST00000368531 SYNE3Q6ZMZ3 975 aa16.25■□□□□ 0.19
TPM3-211ENST00000368531 NOL8Q76FK4 1167 aaKnown RBP16.25■□□□□ 0.19
TPM3-211ENST00000368531 CCDC144CPQ8IYA2 1237 aa16.25■□□□□ 0.19
TPM3-211ENST00000368531 SMCR8Q8TEV9 937 aaPredicted RBP16.25■□□□□ 0.19
TPM3-211ENST00000368531 DCAF4Q8WV16 495 aa16.25■□□□□ 0.19
TPM3-211ENST00000368531 GMCL1Q96IK5 515 aa16.25■□□□□ 0.19
TPM3-211ENST00000368531 PARK7Q99497 189 aaKnown RBP16.25■□□□□ 0.19
TPM3-211ENST00000368531 KIF2CQ99661 725 aa16.25■□□□□ 0.19
TPM3-211ENST00000368531 R3HDMLQ9H3Y0 253 aa16.25■□□□□ 0.19
TPM3-211ENST00000368531 ZFYVE28Q9HCC9 887 aa16.25■□□□□ 0.19
TPM3-211ENST00000368531 PNMA3Q9UL41 463 aa16.25■□□□□ 0.19
TPM3-211ENST00000368531 BRPF3Q9ULD4 1205 aa16.25■□□□□ 0.19
TPM3-211ENST00000368531 SLC12A7Q9Y666 1083 aa16.25■□□□□ 0.19
TPM3-211ENST00000368531 RLFQ13129 1914 aa16.24■□□□□ 0.19
TPM3-211ENST00000368531 KLF18A0A0U1RQI7 1052 aa16.24■□□□□ 0.19
TPM3-211ENST00000368531 CA12O43570 354 aa16.24■□□□□ 0.19
TPM3-211ENST00000368531 PEX10O60683 326 aa16.24■□□□□ 0.19
TPM3-211ENST00000368531 PARP1P09874 1014 aaKnown RBP16.24■□□□□ 0.19
TPM3-211ENST00000368531 SLC16A2P36021 539 aa16.24■□□□□ 0.19
TPM3-211ENST00000368531 COG2Q14746 738 aa16.24■□□□□ 0.19
TPM3-211ENST00000368531 KIFC2Q96AC6 838 aa16.24■□□□□ 0.19
TPM3-211ENST00000368531 IL17RAQ96F46 866 aa16.24■□□□□ 0.19
TPM3-211ENST00000368531 ZCCHC17Q9NP64 241 aaKnown RBP16.24■□□□□ 0.19
TPM3-211ENST00000368531 SLC45A1Q9Y2W3 748 aa16.24■□□□□ 0.19
TPM3-211ENST00000368531 COL11A1P12107 1806 aaPredicted RBP16.24■□□□□ 0.19
TPM3-211ENST00000368531 ECM2O94769 699 aaPredicted RBP16.23■□□□□ 0.19
TPM3-211ENST00000368531 ZNF543Q08ER8 600 aa16.23■□□□□ 0.19
TPM3-211ENST00000368531 TOB2Q14106 344 aaPredicted RBP16.23■□□□□ 0.19
TPM3-211ENST00000368531 MICU3Q86XE3 530 aa16.23■□□□□ 0.19
TPM3-211ENST00000368531 JMYQ8N9B5 988 aa16.23■□□□□ 0.19
TPM3-211ENST00000368531 ATG4CQ96DT6 458 aa16.23■□□□□ 0.19
TPM3-211ENST00000368531 PAGR1Q9BTK6 254 aa16.23■□□□□ 0.19
TPM3-211ENST00000368531 UBA5Q9GZZ9 404 aa16.23■□□□□ 0.19
TPM3-211ENST00000368531 CPVLQ9H3G5 476 aa16.23■□□□□ 0.19
TPM3-211ENST00000368531 WBP1LQ9NX94 342 aa16.23■□□□□ 0.19
TPM3-211ENST00000368531 CPA4Q9UI42 421 aa16.23■□□□□ 0.19
TPM3-211ENST00000368531 FEM1BQ9UK73 627 aa16.23■□□□□ 0.19
TPM3-211ENST00000368531 SNHG28P0DPA3 235 aa16.22■□□□□ 0.19
TPM3-211ENST00000368531 DSG3P32926 999 aa16.22■□□□□ 0.19
TPM3-211ENST00000368531 STAT2P52630 851 aa16.22■□□□□ 0.19
TPM3-211ENST00000368531 AK2P54819 239 aa16.22■□□□□ 0.19
TPM3-211ENST00000368531 SNAP25P60880 206 aa16.22■□□□□ 0.19
TPM3-211ENST00000368531 HERVK_113P62684 666 aa16.22■□□□□ 0.19
TPM3-211ENST00000368531 TROAPQ12815 778 aa16.22■□□□□ 0.19
TPM3-211ENST00000368531 GRM4Q14833 912 aa16.22■□□□□ 0.19
TPM3-211ENST00000368531 APOA5Q6Q788 366 aa16.22■□□□□ 0.19
TPM3-211ENST00000368531 SGMS1Q86VZ5 419 aa16.22■□□□□ 0.19
TPM3-211ENST00000368531 STAG2Q8N3U4 1231 aa16.22■□□□□ 0.19
TPM3-211ENST00000368531 CHURC1Q8WUH1 139 aa16.22■□□□□ 0.19
TPM3-211ENST00000368531 SLF1Q9BQI6 1058 aa16.22■□□□□ 0.19
TPM3-211ENST00000368531 HOXC10Q9NYD6 342 aa16.22■□□□□ 0.19
TPM3-211ENST00000368531 SPDYE16A6NNV3 312 aaPredicted RBP16.21■□□□□ 0.19
TPM3-211ENST00000368531 GOLGA8BA8MQT2 603 aa16.21■□□□□ 0.19
TPM3-211ENST00000368531 ZBTB43O43298 467 aa16.21■□□□□ 0.19
TPM3-211ENST00000368531 DHX16O60231 1041 aaKnown RBP16.21■□□□□ 0.19
TPM3-211ENST00000368531 DDAH1O94760 285 aa16.21■□□□□ 0.19
TPM3-211ENST00000368531 ASPRV1Q53RT3 343 aa16.21■□□□□ 0.19
TPM3-211ENST00000368531 FAM160B2Q86V87 743 aa16.21■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms