RNA–Protein interactions for RNA: ENST00000367253.8

SYNE1-206, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 5,189 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-206ENST00000367253 DPH6Q7L8W6 267 aa9.53□□□□□ -0.88
SYNE1-206ENST00000367253 REM2Q8IYK8 340 aaPredicted RBP9.53□□□□□ -0.88
SYNE1-206ENST00000367253 PGBD3Q8N328 593 aa9.53□□□□□ -0.88
SYNE1-206ENST00000367253 ATL2Q8NHH9 583 aa9.53□□□□□ -0.88
SYNE1-206ENST00000367253 TRIM47Q96LD4 638 aa9.53□□□□□ -0.88
SYNE1-206ENST00000367253 ANO3Q9BYT9 981 aa9.53□□□□□ -0.88
SYNE1-206ENST00000367253 INO80BQ9C086 356 aaPredicted RBP9.53□□□□□ -0.88
SYNE1-206ENST00000367253 XAB2Q9HCS7 855 aaKnown RBP9.53□□□□□ -0.88
SYNE1-206ENST00000367253 COPRSQ9NQ92 184 aa9.53□□□□□ -0.88
SYNE1-206ENST00000367253 ZNF277Q9NRM2 450 aaPredicted RBP9.53□□□□□ -0.88
SYNE1-206ENST00000367253 DNAI1Q9UI46 699 aa9.53□□□□□ -0.88
SYNE1-206ENST00000367253 ABL1P00519 1130 aa9.53□□□□□ -0.88
SYNE1-206ENST00000367253 RASIP1Q5U651 963 aa9.53□□□□□ -0.88
SYNE1-206ENST00000367253 RNF219Q5W0B1 726 aaPredicted RBP9.53□□□□□ -0.88
SYNE1-206ENST00000367253 NBPF10Q6P3W6 841 aaKnown RBP9.53□□□□□ -0.88
SYNE1-206ENST00000367253 CCDC189A1A4V9 331 aa9.53□□□□□ -0.88
SYNE1-206ENST00000367253 SPECC1L-ADORA2AF8WAN1 911 aa9.53□□□□□ -0.88
SYNE1-206ENST00000367253 KCNQ2O43526 872 aa9.53□□□□□ -0.88
SYNE1-206ENST00000367253 BPIFB4P59827 614 aa9.53□□□□□ -0.88
SYNE1-206ENST00000367253 IRX5P78411 483 aaPredicted RBP9.53□□□□□ -0.88
SYNE1-206ENST00000367253 MKRN3Q13064 507 aaKnown RBP9.53□□□□□ -0.88
SYNE1-206ENST00000367253 NCOA7Q8NI08 942 aa9.53□□□□□ -0.88
SYNE1-206ENST00000367253 CCDC26Q8TAB7 109 aa9.53□□□□□ -0.88
SYNE1-206ENST00000367253 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP9.53□□□□□ -0.88
SYNE1-206ENST00000367253 FLT4P35916 1363 aa9.53□□□□□ -0.88
SYNE1-206ENST00000367253 ZNF335Q9H4Z2 1342 aaPredicted RBP9.53□□□□□ -0.88
SYNE1-206ENST00000367253 FLOT1O75955 427 aa9.53□□□□□ -0.88
SYNE1-206ENST00000367253 STMN1P16949 149 aa9.53□□□□□ -0.88
SYNE1-206ENST00000367253 KLHL40Q2TBA0 621 aa9.53□□□□□ -0.88
SYNE1-206ENST00000367253 ARHGEF16Q5VV41 709 aa9.53□□□□□ -0.88
SYNE1-206ENST00000367253 ARMCX5Q6P1M9 558 aa9.53□□□□□ -0.88
SYNE1-206ENST00000367253 MYLK4Q86YV6 388 aaPredicted RBP9.53□□□□□ -0.88
SYNE1-206ENST00000367253 FAM76AQ8TAV0 307 aa9.53□□□□□ -0.88
SYNE1-206ENST00000367253 MTFR1LQ9H019 292 aa9.53□□□□□ -0.88
SYNE1-206ENST00000367253 SLC12A6Q9UHW9 1150 aa9.53□□□□□ -0.88
SYNE1-206ENST00000367253 RNF17Q9BXT8 1623 aaKnown RBP9.53□□□□□ -0.88
SYNE1-206ENST00000367253 EIF3DO15371 548 aaKnown RBP eCLIP9.52□□□□□ -0.88
SYNE1-206ENST00000367253 ZNF341Q9BYN7 854 aa9.52□□□□□ -0.88
SYNE1-206ENST00000367253 POLIQ9UNA4 740 aa9.52□□□□□ -0.88
SYNE1-206ENST00000367253 FNDC3AQ9Y2H6 1198 aaKnown RBP9.52□□□□□ -0.88
SYNE1-206ENST00000367253 DAPK3O43293 454 aa9.52□□□□□ -0.89
SYNE1-206ENST00000367253 IARSP41252 1262 aaKnown RBP9.52□□□□□ -0.89
SYNE1-206ENST00000367253 RECQLP46063 649 aaPredicted RBP9.52□□□□□ -0.89
SYNE1-206ENST00000367253 RWDD2BP57060 319 aa9.52□□□□□ -0.89
SYNE1-206ENST00000367253 POLR2FP61218 127 aaKnown RBP9.52□□□□□ -0.89
SYNE1-206ENST00000367253 ZSCAN26Q16670 478 aa9.52□□□□□ -0.89
SYNE1-206ENST00000367253 CHD1LQ86WJ1 897 aa9.52□□□□□ -0.89
SYNE1-206ENST00000367253 TRAF3IP1Q8TDR0 691 aaPredicted RBP9.52□□□□□ -0.89
SYNE1-206ENST00000367253 DACT3Q96B18 629 aaPredicted RBP9.52□□□□□ -0.89
SYNE1-206ENST00000367253 GBP5Q96PP8 586 aa9.52□□□□□ -0.89
SYNE1-206ENST00000367253 WDR3Q9UNX4 943 aaKnown RBP eCLIP9.52□□□□□ -0.89
SYNE1-206ENST00000367253 TSC22D4Q9Y3Q8 395 aa9.52□□□□□ -0.89
SYNE1-206ENST00000367253 TCP10L2B9ZVM9 353 aa9.52□□□□□ -0.89
SYNE1-206ENST00000367253 OLFML1Q6UWY5 402 aa9.52□□□□□ -0.89
SYNE1-206ENST00000367253 SIX5Q8N196 739 aa9.52□□□□□ -0.89
SYNE1-206ENST00000367253 FBXL21Q9UKT6 434 aa9.52□□□□□ -0.89
SYNE1-206ENST00000367253 ZMYM4Q5VZL5 1548 aa9.52□□□□□ -0.89
SYNE1-206ENST00000367253 TSPAN9O75954 239 aa9.52□□□□□ -0.89
SYNE1-206ENST00000367253 USP17L8P0C7I0 530 aa9.52□□□□□ -0.89
SYNE1-206ENST00000367253 SND1Q7KZF4 910 aaKnown RBP eCLIP9.52□□□□□ -0.89
SYNE1-206ENST00000367253 HS6ST3Q8IZP7 471 aa9.52□□□□□ -0.89
SYNE1-206ENST00000367253 TRIM7Q9C029 511 aa9.52□□□□□ -0.89
SYNE1-206ENST00000367253 ZBTB21Q9ULJ3 1066 aa9.52□□□□□ -0.89
SYNE1-206ENST00000367253 SRPRBQ9Y5M8 271 aaKnown RBP9.52□□□□□ -0.89
SYNE1-206ENST00000367253 PER1O15534 1290 aaPredicted RBP9.52□□□□□ -0.89
SYNE1-206ENST00000367253 SKILP12757 684 aa9.52□□□□□ -0.89
SYNE1-206ENST00000367253 DDX42Q86XP3 938 aaKnown RBP eCLIP9.52□□□□□ -0.89
SYNE1-206ENST00000367253 METTL13Q8N6R0 699 aa9.52□□□□□ -0.89
SYNE1-206ENST00000367253 MIS12Q9H081 205 aa9.52□□□□□ -0.89
SYNE1-206ENST00000367253 HELLSQ9NRZ9 838 aa9.52□□□□□ -0.89
SYNE1-206ENST00000367253 ASXL1Q8IXJ9 1541 aa9.51□□□□□ -0.89
SYNE1-206ENST00000367253 PARD3Q8TEW0 1356 aa9.51□□□□□ -0.89
SYNE1-206ENST00000367253 LOC102724428A0A0B4J2F2 783 aa9.51□□□□□ -0.89
SYNE1-206ENST00000367253 A6NNZ2 444 aa9.51□□□□□ -0.89
SYNE1-206ENST00000367253 RHOXF2BP0C7M4 288 aa9.51□□□□□ -0.89
SYNE1-206ENST00000367253 TPP2P29144 1249 aaPredicted RBP9.51□□□□□ -0.89
SYNE1-206ENST00000367253 SIK1P57059 783 aa9.51□□□□□ -0.89
SYNE1-206ENST00000367253 TUBB8Q3ZCM7 444 aa9.51□□□□□ -0.89
SYNE1-206ENST00000367253 MFSD14BQ5SR56 506 aa9.51□□□□□ -0.89
SYNE1-206ENST00000367253 HEATR3Q7Z4Q2 680 aa9.51□□□□□ -0.89
SYNE1-206ENST00000367253 TMEM57Q8N5G2 664 aa9.51□□□□□ -0.89
SYNE1-206ENST00000367253 PARD3BQ8TEW8 1205 aa9.51□□□□□ -0.89
SYNE1-206ENST00000367253 SPOCK3Q9BQ16 436 aa9.51□□□□□ -0.89
SYNE1-206ENST00000367253 RHOXF2Q9BQY4 288 aa9.51□□□□□ -0.89
SYNE1-206ENST00000367253 SDAD1Q9NVU7 687 aaKnown RBP eCLIP9.51□□□□□ -0.89
SYNE1-206ENST00000367253 DDX41Q9UJV9 622 aaKnown RBP9.51□□□□□ -0.89
SYNE1-206ENST00000367253 LEMD3Q9Y2U8 911 aa9.51□□□□□ -0.89
SYNE1-206ENST00000367253 CTAGE9A4FU28 777 aa9.51□□□□□ -0.89
SYNE1-206ENST00000367253 CA12O43570 354 aa9.51□□□□□ -0.89
SYNE1-206ENST00000367253 CIB2O75838 187 aa9.51□□□□□ -0.89
SYNE1-206ENST00000367253 FOSL2P15408 326 aa9.51□□□□□ -0.89
SYNE1-206ENST00000367253 POLE2P56282 527 aa9.51□□□□□ -0.89
SYNE1-206ENST00000367253 CNGB3Q9NQW8 809 aa9.51□□□□□ -0.89
SYNE1-206ENST00000367253 SH2B1Q9NRF2 756 aaPredicted RBP9.51□□□□□ -0.89
SYNE1-206ENST00000367253 SPHKAPQ2M3C7 1700 aa9.51□□□□□ -0.89
SYNE1-206ENST00000367253 CARNS1A5YM72 827 aa9.51□□□□□ -0.89
SYNE1-206ENST00000367253 MAFGO15525 162 aa9.51□□□□□ -0.89
SYNE1-206ENST00000367253 ANXA13P27216 316 aa9.51□□□□□ -0.89
SYNE1-206ENST00000367253 ZNF131P52739 623 aa9.51□□□□□ -0.89
SYNE1-206ENST00000367253 PRKCQQ04759 706 aa9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms