RNA–Protein interactions for RNA: ENST00000359947.8

PTPRF-201, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best) BASIC

Gene PTPRF, Length 7,727 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-201ENST00000359947 ABCB4P21439 1286 aa17.23■□□□□ 0.35
PTPRF-201ENST00000359947 PNOCQ13519 176 aa17.23■□□□□ 0.35
PTPRF-201ENST00000359947 DAAM2Q86T65 1068 aa17.23■□□□□ 0.35
PTPRF-201ENST00000359947 KLHL7Q8IXQ5 586 aa17.23■□□□□ 0.35
PTPRF-201ENST00000359947 INTS4Q96HW7 963 aaKnown RBP17.23■□□□□ 0.35
PTPRF-201ENST00000359947 AP5M1Q9H0R1 490 aa17.23■□□□□ 0.35
PTPRF-201ENST00000359947 NKIRAS1Q9NYS0 192 aa17.23■□□□□ 0.35
PTPRF-201ENST00000359947 TNNC2P02585 160 aa17.23■□□□□ 0.35
PTPRF-201ENST00000359947 UBN2Q6ZU65 1347 aa17.23■□□□□ 0.35
PTPRF-201ENST00000359947 SGSM2O43147 1006 aa17.23■□□□□ 0.35
PTPRF-201ENST00000359947 ARPP19P56211 112 aa17.23■□□□□ 0.35
PTPRF-201ENST00000359947 MCF2L2Q86YR7 1114 aa17.23■□□□□ 0.35
PTPRF-201ENST00000359947 SMC5Q8IY18 1101 aa17.23■□□□□ 0.35
PTPRF-201ENST00000359947 LRFN2Q9ULH4 789 aa17.23■□□□□ 0.35
PTPRF-201ENST00000359947 ATP7AQ04656 1500 aa17.23■□□□□ 0.35
PTPRF-201ENST00000359947 CEP104O60308 925 aa17.22■□□□□ 0.35
PTPRF-201ENST00000359947 IL17REQ8NFR9 667 aa17.22■□□□□ 0.35
PTPRF-201ENST00000359947 CCDC127Q96BQ5 260 aa17.22■□□□□ 0.35
PTPRF-201ENST00000359947 KDRP35968 1356 aa17.22■□□□□ 0.35
PTPRF-201ENST00000359947 PSMD6Q15008 389 aa17.22■□□□□ 0.35
PTPRF-201ENST00000359947 ATL3Q6DD88 541 aa17.22■□□□□ 0.35
PTPRF-201ENST00000359947 HAUS2Q9NVX0 235 aa17.22■□□□□ 0.35
PTPRF-201ENST00000359947 RNASELQ05823 741 aaKnown RBP17.22■□□□□ 0.35
PTPRF-201ENST00000359947 TYW1BQ6NUM6 668 aa17.22■□□□□ 0.35
PTPRF-201ENST00000359947 MAP3K15Q6ZN16 1313 aa17.22■□□□□ 0.35
PTPRF-201ENST00000359947 ADORA1P30542 326 aa17.22■□□□□ 0.35
PTPRF-201ENST00000359947 ARMC9Q7Z3E5 817 aa17.22■□□□□ 0.35
PTPRF-201ENST00000359947 SKA2Q8WVK7 121 aaPredicted RBP17.22■□□□□ 0.35
PTPRF-201ENST00000359947 MAST1Q9Y2H9 1570 aa17.22■□□□□ 0.35
PTPRF-201ENST00000359947 PDE6AP16499 860 aa17.22■□□□□ 0.35
PTPRF-201ENST00000359947 DMP1Q13316 513 aaPredicted RBP17.22■□□□□ 0.35
PTPRF-201ENST00000359947 RRAGAQ7L523 313 aa17.22■□□□□ 0.35
PTPRF-201ENST00000359947 TAB3Q8N5C8 712 aaPredicted RBP17.22■□□□□ 0.35
PTPRF-201ENST00000359947 LSM14BQ9BX40 385 aaKnown RBP17.22■□□□□ 0.35
PTPRF-201ENST00000359947 PALD1Q9ULE6 856 aa17.22■□□□□ 0.35
PTPRF-201ENST00000359947 DALRD3Q5D0E6 543 aaKnown RBP17.21■□□□□ 0.35
PTPRF-201ENST00000359947 PHKA1P46020 1223 aa17.21■□□□□ 0.35
PTPRF-201ENST00000359947 CCDC121Q6ZUS5 278 aa17.21■□□□□ 0.35
PTPRF-201ENST00000359947 TEKT3Q9BXF9 490 aa17.21■□□□□ 0.35
PTPRF-201ENST00000359947 SEC31BQ9NQW1 1179 aa17.21■□□□□ 0.35
PTPRF-201ENST00000359947 TRIM50Q86XT4 487 aa17.21■□□□□ 0.35
PTPRF-201ENST00000359947 GPR101Q96P66 508 aaPredicted RBP17.21■□□□□ 0.35
PTPRF-201ENST00000359947 CALCOCO1Q9P1Z2 691 aa17.21■□□□□ 0.35
PTPRF-201ENST00000359947 PARP2Q9UGN5 583 aa17.21■□□□□ 0.35
PTPRF-201ENST00000359947 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.21■□□□□ 0.35
PTPRF-201ENST00000359947 BLIDQ8IZY5 108 aa17.21■□□□□ 0.35
PTPRF-201ENST00000359947 XDHP47989 1333 aa17.21■□□□□ 0.35
PTPRF-201ENST00000359947 ARHGEF6Q15052 776 aa17.21■□□□□ 0.35
PTPRF-201ENST00000359947 CCDC105Q8IYK2 499 aa17.21■□□□□ 0.35
PTPRF-201ENST00000359947 GABPB2Q8TAK5 448 aaPredicted RBP17.21■□□□□ 0.35
PTPRF-201ENST00000359947 PUS3Q9BZE2 481 aaKnown RBP17.21■□□□□ 0.35
PTPRF-201ENST00000359947 TMEM2Q9UHN6 1383 aa17.21■□□□□ 0.35
PTPRF-201ENST00000359947 FANCCQ00597 558 aa17.21■□□□□ 0.35
PTPRF-201ENST00000359947 NT5C3AQ9H0P0 336 aa17.21■□□□□ 0.35
PTPRF-201ENST00000359947 ZBTB1Q9Y2K1 713 aa17.21■□□□□ 0.35
PTPRF-201ENST00000359947 SFMBT2Q5VUG0 894 aa17.2■□□□□ 0.34
PTPRF-201ENST00000359947 KIF9Q9HAQ2 790 aa17.2■□□□□ 0.34
PTPRF-201ENST00000359947 TBC1D8O95759 1140 aa17.2■□□□□ 0.34
PTPRF-201ENST00000359947 C8orf74Q6P047 294 aa17.2■□□□□ 0.34
PTPRF-201ENST00000359947 PANK4Q9NVE7 773 aa17.2■□□□□ 0.34
PTPRF-201ENST00000359947 PCDHA1Q9Y5I3 950 aa17.2■□□□□ 0.34
PTPRF-201ENST00000359947 SND1Q7KZF4 910 aaKnown RBP eCLIP17.2■□□□□ 0.341e-16■■■□□ 18.3
PTPRF-201ENST00000359947 SAMD15Q9P1V8 674 aa17.2■□□□□ 0.34
PTPRF-201ENST00000359947 NUB1Q9Y5A7 615 aa17.2■□□□□ 0.34
PTPRF-201ENST00000359947 SLC16A2P36021 539 aa17.2■□□□□ 0.34
PTPRF-201ENST00000359947 MNAT1P51948 309 aa17.2■□□□□ 0.34
PTPRF-201ENST00000359947 SERTAD1Q9UHV2 236 aa17.2■□□□□ 0.34
PTPRF-201ENST00000359947 STK25O00506 426 aa17.2■□□□□ 0.34
PTPRF-201ENST00000359947 CAPN2P17655 700 aa17.2■□□□□ 0.34
PTPRF-201ENST00000359947 TNKSO95271 1327 aa17.2■□□□□ 0.34
PTPRF-201ENST00000359947 CCNA1P78396 465 aa17.2■□□□□ 0.34
PTPRF-201ENST00000359947 SETDB1Q15047 1291 aa17.2■□□□□ 0.34
PTPRF-201ENST00000359947 PRIMPOLQ96LW4 560 aa17.2■□□□□ 0.34
PTPRF-201ENST00000359947 SRP68Q9UHB9 627 aaKnown RBP17.2■□□□□ 0.34
PTPRF-201ENST00000359947 PIK3C2GO75747 1445 aa17.2■□□□□ 0.34
PTPRF-201ENST00000359947 ACTN4O43707 911 aaKnown RBP17.19■□□□□ 0.34
PTPRF-201ENST00000359947 SLC12A2P55011 1212 aa17.19■□□□□ 0.34
PTPRF-201ENST00000359947 DISC1Q9NRI5 854 aa17.19■□□□□ 0.34
PTPRF-201ENST00000359947 ATP5JP18859 108 aa17.19■□□□□ 0.34
PTPRF-201ENST00000359947 U2AF1L4Q8WU68 220 aaKnown RBP17.19■□□□□ 0.34
PTPRF-201ENST00000359947 ZHX1Q9UKY1 873 aaPredicted RBP17.19■□□□□ 0.34
PTPRF-201ENST00000359947 KDM3AQ9Y4C1 1321 aa17.19■□□□□ 0.34
PTPRF-201ENST00000359947 TMEM191BP0C7N4 346 aa17.19■□□□□ 0.34
PTPRF-201ENST00000359947 ATF7P17544 494 aaPredicted RBP17.19■□□□□ 0.34
PTPRF-201ENST00000359947 SUPT20HL1Q3ZLR7 823 aa17.19■□□□□ 0.34
PTPRF-201ENST00000359947 SEPT12Q8IYM1 358 aa17.19■□□□□ 0.34
PTPRF-201ENST00000359947 FAM178BQ8IXR5 827 aa17.19■□□□□ 0.34
PTPRF-201ENST00000359947 SECISBP2LQ93073 1101 aaKnown RBP17.19■□□□□ 0.34
PTPRF-201ENST00000359947 MKRN1Q9UHC7 482 aaKnown RBP17.19■□□□□ 0.34
PTPRF-201ENST00000359947 FAM160B1Q5W0V3 765 aa17.19■□□□□ 0.34
PTPRF-201ENST00000359947 KRT222Q8N1A0 295 aa17.19■□□□□ 0.34
PTPRF-201ENST00000359947 POMGNT1Q8WZA1 660 aa17.19■□□□□ 0.34
PTPRF-201ENST00000359947 A0A0D9SFI3 127 aa17.18■□□□□ 0.34
PTPRF-201ENST00000359947 XRCC5P13010 732 aaKnown RBP17.18■□□□□ 0.34
PTPRF-201ENST00000359947 PPP2R3AQ06190 1150 aa17.18■□□□□ 0.34
PTPRF-201ENST00000359947 KSR1Q8IVT5 923 aa17.18■□□□□ 0.34
PTPRF-201ENST00000359947 NME8Q8N427 588 aa17.18■□□□□ 0.34
PTPRF-201ENST00000359947 YWHAEP62258 255 aaKnown RBP17.18■□□□□ 0.34
PTPRF-201ENST00000359947 RSAD2Q8WXG1 361 aa17.18■□□□□ 0.34
PTPRF-201ENST00000359947 NFE2L3Q9Y4A8 694 aa17.18■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms