RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 KLRF2D3W0D1 207 aa8.15□□□□□ -1.11
VPS13A-202ENST00000357409 LRRN2O75325 713 aa8.15□□□□□ -1.11
VPS13A-202ENST00000357409 ZNF365Q70YC5 407 aa8.15□□□□□ -1.11
VPS13A-202ENST00000357409 CCNYQ8ND76 341 aa8.15□□□□□ -1.11
VPS13A-202ENST00000357409 B4DLN1 442 aa8.15□□□□□ -1.11
VPS13A-202ENST00000357409 TMEM62Q0P6H9 643 aa8.15□□□□□ -1.11
VPS13A-202ENST00000357409 E7EWF7 191 aa8.14□□□□□ -1.11
VPS13A-202ENST00000357409 GOLGA8SH3BPF8 625 aa8.14□□□□□ -1.11
VPS13A-202ENST00000357409 KCNQ2O43526 872 aa8.14□□□□□ -1.11
VPS13A-202ENST00000357409 ADCY7P51828 1080 aa8.14□□□□□ -1.11
VPS13A-202ENST00000357409 PI4K2BQ8TCG2 481 aa8.14□□□□□ -1.11
VPS13A-202ENST00000357409 POC1B-GALNT4F8VUJ3 575 aa8.14□□□□□ -1.11
VPS13A-202ENST00000357409 K7ENM7 598 aa8.14□□□□□ -1.11
VPS13A-202ENST00000357409 GIPC1O14908 333 aa8.14□□□□□ -1.11
VPS13A-202ENST00000357409 C6orf163Q5TEZ5 329 aa8.14□□□□□ -1.11
VPS13A-202ENST00000357409 APPBP2Q92624 585 aa8.14□□□□□ -1.11
VPS13A-202ENST00000357409 MAD1L1Q9Y6D9 718 aa8.14□□□□□ -1.11
VPS13A-202ENST00000357409 ZMYND10O75800 440 aa8.14□□□□□ -1.11
VPS13A-202ENST00000357409 SEL1L2Q5TEA6 688 aa8.14□□□□□ -1.11
VPS13A-202ENST00000357409 KRT27Q7Z3Y8 459 aa8.14□□□□□ -1.11
VPS13A-202ENST00000357409 PPP1R13LQ8WUF5 828 aa8.14□□□□□ -1.11
VPS13A-202ENST00000357409 EXT2Q93063 718 aa8.14□□□□□ -1.11
VPS13A-202ENST00000357409 LOC102724428A0A0B4J2F2 783 aa8.14□□□□□ -1.11
VPS13A-202ENST00000357409 PPEF1O14829 653 aaPredicted RBP8.14□□□□□ -1.11
VPS13A-202ENST00000357409 EIF2AK2P19525 551 aaKnown RBP8.14□□□□□ -1.11
VPS13A-202ENST00000357409 PDE6BP35913 854 aa8.14□□□□□ -1.11
VPS13A-202ENST00000357409 SIK1P57059 783 aa8.14□□□□□ -1.11
VPS13A-202ENST00000357409 KRT81Q14533 505 aa8.14□□□□□ -1.11
VPS13A-202ENST00000357409 PSTPIP2Q9H939 334 aa8.14□□□□□ -1.11
VPS13A-202ENST00000357409 ZNF335Q9H4Z2 1342 aaPredicted RBP8.14□□□□□ -1.11
VPS13A-202ENST00000357409 YIPF2Q9BWQ6 316 aa8.14□□□□□ -1.11
VPS13A-202ENST00000357409 USP17L3A6NCW0 530 aa8.14□□□□□ -1.11
VPS13A-202ENST00000357409 USP17L4A6NCW7 530 aa8.14□□□□□ -1.11
VPS13A-202ENST00000357409 USP17L1Q7RTZ2 530 aa8.14□□□□□ -1.11
VPS13A-202ENST00000357409 IGSF22Q8N9C0 903 aa8.14□□□□□ -1.11
VPS13A-202ENST00000357409 LSM14BQ9BX40 385 aaKnown RBP8.14□□□□□ -1.11
VPS13A-202ENST00000357409 VPS37BQ9H9H4 285 aa8.14□□□□□ -1.11
VPS13A-202ENST00000357409 RASAL2Q9UJF2 1139 aa8.14□□□□□ -1.11
VPS13A-202ENST00000357409 ZBTB12Q9Y330 459 aaPredicted RBP8.14□□□□□ -1.11
VPS13A-202ENST00000357409 PAXBP1Q9Y5B6 917 aa8.14□□□□□ -1.11
VPS13A-202ENST00000357409 EPRSP07814 1512 aaKnown RBP8.14□□□□□ -1.11
VPS13A-202ENST00000357409 N4BP1O75113 896 aaKnown RBP8.14□□□□□ -1.11
VPS13A-202ENST00000357409 KRT15P19012 456 aa8.14□□□□□ -1.11
VPS13A-202ENST00000357409 CXCR5P32302 372 aa8.14□□□□□ -1.11
VPS13A-202ENST00000357409 GKAP1Q5VSY0 366 aaPredicted RBP8.14□□□□□ -1.11
VPS13A-202ENST00000357409 BAG1Q99933 345 aaPredicted RBP8.14□□□□□ -1.11
VPS13A-202ENST00000357409 KDRP35968 1356 aa8.14□□□□□ -1.11
VPS13A-202ENST00000357409 CAPN2P17655 700 aa8.14□□□□□ -1.11
VPS13A-202ENST00000357409 PALM2Q8IXS6 379 aa8.14□□□□□ -1.11
VPS13A-202ENST00000357409 IQUBQ8NA54 791 aa8.14□□□□□ -1.11
VPS13A-202ENST00000357409 WDR66Q8TBY9 1149 aa8.14□□□□□ -1.11
VPS13A-202ENST00000357409 PANK4Q9NVE7 773 aa8.14□□□□□ -1.11
VPS13A-202ENST00000357409 CLIC4Q9Y696 253 aa8.14□□□□□ -1.11
VPS13A-202ENST00000357409 TOP2AP11388 1531 aaKnown RBP8.14□□□□□ -1.11
VPS13A-202ENST00000357409 WDR91A4D1P6 747 aa8.13□□□□□ -1.11
VPS13A-202ENST00000357409 SLFN13Q68D06 897 aa8.13□□□□□ -1.11
VPS13A-202ENST00000357409 SZRD1Q7Z422 152 aa8.13□□□□□ -1.11
VPS13A-202ENST00000357409 BTBD18B2RXH4 712 aa8.13□□□□□ -1.11
VPS13A-202ENST00000357409 CETN3O15182 167 aa8.13□□□□□ -1.11
VPS13A-202ENST00000357409 GPBP1Q86WP2 473 aa8.13□□□□□ -1.11
VPS13A-202ENST00000357409 HELLSQ9NRZ9 838 aa8.13□□□□□ -1.11
VPS13A-202ENST00000357409 CD2APQ9Y5K6 639 aa8.13□□□□□ -1.11
VPS13A-202ENST00000357409 NKTRP30414 1462 aaKnown RBP8.13□□□□□ -1.11
VPS13A-202ENST00000357409 CALUO43852 315 aaPredicted RBP8.13□□□□□ -1.11
VPS13A-202ENST00000357409 PPARAQ07869 468 aa8.13□□□□□ -1.11
VPS13A-202ENST00000357409 KLHL30Q0D2K2 578 aa8.13□□□□□ -1.11
VPS13A-202ENST00000357409 CCDC105Q8IYK2 499 aa8.13□□□□□ -1.11
VPS13A-202ENST00000357409 DDX12PQ92771 950 aa8.13□□□□□ -1.11
VPS13A-202ENST00000357409 ZMYM3Q14202 1370 aa8.13□□□□□ -1.11
VPS13A-202ENST00000357409 CALCOCO2Q13137 446 aa8.13□□□□□ -1.11
VPS13A-202ENST00000357409 NONOQ15233 471 aaKnown RBP eCLIP8.13□□□□□ -1.116e-6■■■■□ 21
VPS13A-202ENST00000357409 DCAF4L1Q3SXM0 396 aa8.13□□□□□ -1.11
VPS13A-202ENST00000357409 NELFBQ8WX92 580 aa8.13□□□□□ -1.11
VPS13A-202ENST00000357409 SMC6Q96SB8 1091 aa8.13□□□□□ -1.11
VPS13A-202ENST00000357409 AP5M1Q9H0R1 490 aa8.13□□□□□ -1.11
VPS13A-202ENST00000357409 AS3MTQ9HBK9 375 aa8.13□□□□□ -1.11
VPS13A-202ENST00000357409 HMG20BQ9P0W2 317 aa8.13□□□□□ -1.11
VPS13A-202ENST00000357409 KRT86O43790 486 aa8.13□□□□□ -1.11
VPS13A-202ENST00000357409 PDIA4P13667 645 aaKnown RBP8.13□□□□□ -1.11
VPS13A-202ENST00000357409 CTSWP56202 376 aa8.13□□□□□ -1.11
VPS13A-202ENST00000357409 CEP85LQ5SZL2 805 aa8.13□□□□□ -1.11
VPS13A-202ENST00000357409 SPECC1LQ69YQ0 1117 aa8.13□□□□□ -1.11
VPS13A-202ENST00000357409 TEX2Q8IWB9 1127 aa8.13□□□□□ -1.11
VPS13A-202ENST00000357409 RPUSD2Q8IZ73 545 aaKnown RBP8.13□□□□□ -1.11
VPS13A-202ENST00000357409 RBSNQ9H1K0 784 aa8.13□□□□□ -1.11
VPS13A-202ENST00000357409 TRIP13Q15645 432 aaPredicted RBP8.13□□□□□ -1.11
VPS13A-202ENST00000357409 MAGEA1P43355 309 aa8.13□□□□□ -1.11
VPS13A-202ENST00000357409 GCKRQ14397 625 aa8.13□□□□□ -1.11
VPS13A-202ENST00000357409 MESDQ14696 234 aa8.13□□□□□ -1.11
VPS13A-202ENST00000357409 LONRF2Q1L5Z9 754 aa8.13□□□□□ -1.11
VPS13A-202ENST00000357409 OTUD5Q96G74 571 aa8.13□□□□□ -1.11
VPS13A-202ENST00000357409 NAP1L3Q99457 506 aaPredicted RBP8.13□□□□□ -1.11
VPS13A-202ENST00000357409 KCNH3Q9ULD8 1083 aa8.13□□□□□ -1.11
VPS13A-202ENST00000357409 SOS1Q07889 1333 aaPredicted RBP8.13□□□□□ -1.11
VPS13A-202ENST00000357409 GNAT2P19087 354 aa8.13□□□□□ -1.11
VPS13A-202ENST00000357409 ZBTB41Q5SVQ8 909 aa8.13□□□□□ -1.11
VPS13A-202ENST00000357409 SEPT12Q8IYM1 358 aa8.13□□□□□ -1.11
VPS13A-202ENST00000357409 KIFAP3Q92845 792 aa8.13□□□□□ -1.11
VPS13A-202ENST00000357409 BHMTQ93088 406 aa8.13□□□□□ -1.11
VPS13A-202ENST00000357409 MRPL42Q9Y6G3 142 aaKnown RBP8.13□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms