RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 MYO1CO00159 1063 aa21.6■■□□□ 1.05
CCDC88B-202ENST00000356786 RPSAP08865 295 aaKnown RBP21.6■■□□□ 1.05
CCDC88B-202ENST00000356786 PTPROQ16827 1216 aa21.6■■□□□ 1.05
CCDC88B-202ENST00000356786 EFCC1Q9HA90 598 aa21.6■■□□□ 1.05
CCDC88B-202ENST00000356786 AMFRQ9UKV5 643 aa21.6■■□□□ 1.05
CCDC88B-202ENST00000356786 PDIA3P30101 505 aaKnown RBP21.59■■□□□ 1.05
CCDC88B-202ENST00000356786 E2F5Q15329 346 aa21.59■■□□□ 1.05
CCDC88B-202ENST00000356786 SIRT1Q96EB6 747 aa21.59■■□□□ 1.05
CCDC88B-202ENST00000356786 NAP1L4Q99733 375 aaKnown RBP21.59■■□□□ 1.05
CCDC88B-202ENST00000356786 HSPD1P10809 573 aaKnown RBP21.59■■□□□ 1.05
CCDC88B-202ENST00000356786 PLCG2P16885 1265 aa21.59■■□□□ 1.05
CCDC88B-202ENST00000356786 AP1ARQ63HQ0 302 aa21.59■■□□□ 1.05
CCDC88B-202ENST00000356786 FTOQ9C0B1 505 aaKnown RBP eCLIP21.59■■□□□ 1.05
CCDC88B-202ENST00000356786 AGTPBP1Q9UPW5 1226 aa21.59■■□□□ 1.05
CCDC88B-202ENST00000356786 ZNF532Q9HCE3 1301 aa21.59■■□□□ 1.05
CCDC88B-202ENST00000356786 HECW2Q9P2P5 1572 aa21.59■■□□□ 1.05
CCDC88B-202ENST00000356786 CALUO43852 315 aaPredicted RBP21.59■■□□□ 1.05
CCDC88B-202ENST00000356786 LDHBP07195 334 aaKnown RBP21.59■■□□□ 1.05
CCDC88B-202ENST00000356786 HAUS3Q68CZ6 603 aa21.59■■□□□ 1.05
CCDC88B-202ENST00000356786 EEF2KMTQ96G04 330 aa21.59■■□□□ 1.05
CCDC88B-202ENST00000356786 PDLIM2Q96JY6 352 aa21.59■■□□□ 1.05
CCDC88B-202ENST00000356786 BIRC3Q13489 604 aa21.58■■□□□ 1.05
CCDC88B-202ENST00000356786 CMTR1Q8N1G2 835 aaKnown RBP21.58■■□□□ 1.05
CCDC88B-202ENST00000356786 NDC80O14777 642 aa21.58■■□□□ 1.05
CCDC88B-202ENST00000356786 PUM3Q15397 648 aaKnown RBP21.58■■□□□ 1.05
CCDC88B-202ENST00000356786 UHMK1Q8TAS1 419 aaKnown RBP21.58■■□□□ 1.05
CCDC88B-202ENST00000356786 STAG1Q8WVM7 1258 aa21.58■■□□□ 1.05
CCDC88B-202ENST00000356786 RCOR1Q9UKL0 485 aa21.58■■□□□ 1.05
CCDC88B-202ENST00000356786 ARID5BQ14865 1188 aa21.58■■□□□ 1.04
CCDC88B-202ENST00000356786 KRT25Q7Z3Z0 450 aa21.58■■□□□ 1.04
CCDC88B-202ENST00000356786 NGLY1Q96IV0 654 aa21.58■■□□□ 1.04
CCDC88B-202ENST00000356786 ZNF853P0CG23 659 aa21.58■■□□□ 1.04
CCDC88B-202ENST00000356786 SLC39A14Q15043 492 aa21.58■■□□□ 1.04
CCDC88B-202ENST00000356786 PARP2Q9UGN5 583 aa21.58■■□□□ 1.04
CCDC88B-202ENST00000356786 GAS8O95995 478 aa21.57■■□□□ 1.04
CCDC88B-202ENST00000356786 SETDB2Q96T68 719 aa21.57■■□□□ 1.04
CCDC88B-202ENST00000356786 GPCPD1Q9NPB8 672 aa21.57■■□□□ 1.04
CCDC88B-202ENST00000356786 MYO1AQ9UBC5 1043 aa21.57■■□□□ 1.04
CCDC88B-202ENST00000356786 ODF2LQ9ULJ1 636 aa21.57■■□□□ 1.04
CCDC88B-202ENST00000356786 METP08581 1390 aa21.57■■□□□ 1.04
CCDC88B-202ENST00000356786 ANKRD65E5RJM6 399 aa21.57■■□□□ 1.04
CCDC88B-202ENST00000356786 PPP1R21Q6ZMI0 780 aa21.57■■□□□ 1.04
CCDC88B-202ENST00000356786 ZNF654Q8IZM8 581 aa21.57■■□□□ 1.04
CCDC88B-202ENST00000356786 MSANTD4Q8NCY6 345 aa21.57■■□□□ 1.04
CCDC88B-202ENST00000356786 DDX23Q9BUQ8 820 aaKnown RBP21.57■■□□□ 1.04
CCDC88B-202ENST00000356786 FAM170AA1A519 330 aa21.57■■□□□ 1.04
CCDC88B-202ENST00000356786 GYS2P54840 703 aa21.57■■□□□ 1.04
CCDC88B-202ENST00000356786 PSMD6Q15008 389 aa21.57■■□□□ 1.04
CCDC88B-202ENST00000356786 RPUSD2Q8IZ73 545 aaKnown RBP21.57■■□□□ 1.04
CCDC88B-202ENST00000356786 MAK16Q9BXY0 300 aaKnown RBP21.57■■□□□ 1.04
CCDC88B-202ENST00000356786 TAF5LO75529 589 aa21.56■■□□□ 1.04
CCDC88B-202ENST00000356786 COPB1P53618 953 aaKnown RBP21.56■■□□□ 1.04
CCDC88B-202ENST00000356786 NAA30Q147X3 362 aaPredicted RBP21.56■■□□□ 1.04
CCDC88B-202ENST00000356786 SMC1BQ8NDV3 1235 aa21.56■■□□□ 1.04
CCDC88B-202ENST00000356786 CASP8Q14790 479 aa21.56■■□□□ 1.04
CCDC88B-202ENST00000356786 JPH2Q9BR39 696 aaPredicted RBP21.56■■□□□ 1.04
CCDC88B-202ENST00000356786 ADAM21Q9UKJ8 722 aa21.56■■□□□ 1.04
CCDC88B-202ENST00000356786 ABCB4P21439 1286 aa21.56■■□□□ 1.04
CCDC88B-202ENST00000356786 U2AF1L4Q8WU68 220 aaKnown RBP21.56■■□□□ 1.04
CCDC88B-202ENST00000356786 LSM14BQ9BX40 385 aaKnown RBP21.56■■□□□ 1.04
CCDC88B-202ENST00000356786 PHLDB3Q6NSJ2 640 aa21.55■■□□□ 1.04
CCDC88B-202ENST00000356786 RAB3IPQ96QF0 476 aaPredicted RBP21.55■■□□□ 1.04
CCDC88B-202ENST00000356786 WDR44Q5JSH3 913 aa21.55■■□□□ 1.04
CCDC88B-202ENST00000356786 ZNF804AQ7Z570 1209 aa21.55■■□□□ 1.04
CCDC88B-202ENST00000356786 TCP11Q8WWU5 503 aa21.55■■□□□ 1.04
CCDC88B-202ENST00000356786 DENND2AQ9ULE3 1009 aa21.55■■□□□ 1.04
CCDC88B-202ENST00000356786 EIF4A1P60842 406 aaKnown RBP21.55■■□□□ 1.04
CCDC88B-202ENST00000356786 CASQ2O14958 399 aaPredicted RBP21.55■■□□□ 1.04
CCDC88B-202ENST00000356786 RFC1P35251 1148 aaPredicted RBP21.54■■□□□ 1.04
CCDC88B-202ENST00000356786 RBL2Q08999 1139 aa21.54■■□□□ 1.04
CCDC88B-202ENST00000356786 EHHADHQ08426 723 aa21.54■■□□□ 1.04
CCDC88B-202ENST00000356786 FNBP1Q96RU3 617 aa21.54■■□□□ 1.04
CCDC88B-202ENST00000356786 TBC1D8O95759 1140 aa21.54■■□□□ 1.04
CCDC88B-202ENST00000356786 TROVE2P10155 538 aaKnown RBP eCLIP21.54■■□□□ 1.04
CCDC88B-202ENST00000356786 NSUN7Q8NE18 718 aaKnown RBP21.54■■□□□ 1.04
CCDC88B-202ENST00000356786 CCDC169A6NNP5 214 aa21.54■■□□□ 1.04
CCDC88B-202ENST00000356786 CHMP2AO43633 222 aa21.54■■□□□ 1.04
CCDC88B-202ENST00000356786 GTPBP6O43824 516 aaPredicted RBP21.54■■□□□ 1.04
CCDC88B-202ENST00000356786 STAT1P42224 750 aa21.54■■□□□ 1.04
CCDC88B-202ENST00000356786 IFNAR2P48551 515 aa21.54■■□□□ 1.04
CCDC88B-202ENST00000356786 PPP2R5EQ16537 467 aa21.54■■□□□ 1.04
CCDC88B-202ENST00000356786 CALCRLQ16602 461 aa21.54■■□□□ 1.04
CCDC88B-202ENST00000356786 CCDC14Q49A88 953 aa21.54■■□□□ 1.04
CCDC88B-202ENST00000356786 VPS37BQ9H9H4 285 aa21.54■■□□□ 1.04
CCDC88B-202ENST00000356786 RFC4P35249 363 aa21.53■■□□□ 1.04
CCDC88B-202ENST00000356786 EPHB4P54760 987 aa21.53■■□□□ 1.04
CCDC88B-202ENST00000356786 LIN9Q5TKA1 542 aa21.53■■□□□ 1.04
CCDC88B-202ENST00000356786 SIRT2Q8IXJ6 389 aa21.53■■□□□ 1.04
CCDC88B-202ENST00000356786 POLR3EQ9NVU0 708 aa21.53■■□□□ 1.04
CCDC88B-202ENST00000356786 SAP30BPQ9UHR5 308 aaKnown RBP21.53■■□□□ 1.04
CCDC88B-202ENST00000356786 ADCY9O60503 1353 aa21.53■■□□□ 1.04
CCDC88B-202ENST00000356786 I3L4J1 428 aa21.53■■□□□ 1.04
CCDC88B-202ENST00000356786 LARGE1O95461 756 aa21.53■■□□□ 1.04
CCDC88B-202ENST00000356786 FGAP02671 866 aa21.53■■□□□ 1.04
CCDC88B-202ENST00000356786 ARHGAP44Q17R89 818 aa21.53■■□□□ 1.04
CCDC88B-202ENST00000356786 UIMC1Q96RL1 719 aa21.53■■□□□ 1.04
CCDC88B-202ENST00000356786 ABCB6Q9NP58 842 aa21.53■■□□□ 1.04
CCDC88B-202ENST00000356786 EFCAB6Q5THR3 1501 aa21.53■■□□□ 1.04
CCDC88B-202ENST00000356786 EXOC3O60645 756 aa21.53■■□□□ 1.04
CCDC88B-202ENST00000356786 SESN3P58005 492 aa21.53■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms