RNA–Protein interactions for RNA: ENST00000347617.10

HMGA1-202, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,773 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-202ENST00000347617 SPATA20Q8TB22 786 aa17.92■□□□□ 0.46
HMGA1-202ENST00000347617 NID2Q14112 1375 aa17.92■□□□□ 0.46
HMGA1-202ENST00000347617 EIF3CLB5ME19 914 aaKnown RBP17.91■□□□□ 0.46
HMGA1-202ENST00000347617 MFAP3LO75121 409 aa17.91■□□□□ 0.46
HMGA1-202ENST00000347617 PTPREP23469 700 aa17.91■□□□□ 0.46
HMGA1-202ENST00000347617 ATP2B4P23634 1241 aa17.91■□□□□ 0.46
HMGA1-202ENST00000347617 IARSP41252 1262 aaKnown RBP17.91■□□□□ 0.46
HMGA1-202ENST00000347617 GYS2P54840 703 aa17.91■□□□□ 0.46
HMGA1-202ENST00000347617 ZNF569Q5MCW4 686 aa17.91■□□□□ 0.46
HMGA1-202ENST00000347617 PNKPQ96T60 521 aa17.91■□□□□ 0.46
HMGA1-202ENST00000347617 EIF3CQ99613 913 aaKnown RBP17.91■□□□□ 0.46
HMGA1-202ENST00000347617 DESI2Q9BSY9 194 aa17.91■□□□□ 0.46
HMGA1-202ENST00000347617 GPHNQ9NQX3 736 aaPredicted RBP17.91■□□□□ 0.46
HMGA1-202ENST00000347617 A0A0G2JLW4 131 aa17.91■□□□□ 0.46
HMGA1-202ENST00000347617 SH2B2O14492 632 aaPredicted RBP17.91■□□□□ 0.46
HMGA1-202ENST00000347617 RILPL1Q5EBL4 403 aa17.91■□□□□ 0.46
HMGA1-202ENST00000347617 POTEAQ6S8J7 498 aa17.91■□□□□ 0.46
HMGA1-202ENST00000347617 SUGP1Q8IWZ8 645 aaKnown RBP17.91■□□□□ 0.46
HMGA1-202ENST00000347617 IGSF22Q8N9C0 903 aa17.91■□□□□ 0.46
HMGA1-202ENST00000347617 CCDC148Q8NFR7 591 aa17.91■□□□□ 0.46
HMGA1-202ENST00000347617 PUF60Q9UHX1 559 aaKnown RBP17.91■□□□□ 0.46
HMGA1-202ENST00000347617 SOWAHDA6NJG2 315 aa17.9■□□□□ 0.46
HMGA1-202ENST00000347617 PPFIA3O75145 1194 aa17.9■□□□□ 0.46
HMGA1-202ENST00000347617 GUCY2CP25092 1073 aa17.9■□□□□ 0.46
HMGA1-202ENST00000347617 CDC27P30260 824 aa17.9■□□□□ 0.46
HMGA1-202ENST00000347617 FMR1Q06787 632 aaKnown RBP eCLIP17.9■□□□□ 0.46
HMGA1-202ENST00000347617 RAD9BQ6WBX8 426 aa17.9■□□□□ 0.46
HMGA1-202ENST00000347617 AFAP1L1Q8TED9 768 aa17.9■□□□□ 0.46
HMGA1-202ENST00000347617 CCDC102AQ96A19 550 aa17.9■□□□□ 0.46
HMGA1-202ENST00000347617 CLIC6Q96NY7 704 aa17.9■□□□□ 0.46
HMGA1-202ENST00000347617 NACAP1Q9BZK3 213 aa17.9■□□□□ 0.46
HMGA1-202ENST00000347617 LZTFL1Q9NQ48 299 aa17.9■□□□□ 0.46
HMGA1-202ENST00000347617 JRKLQ9Y4A0 524 aa17.9■□□□□ 0.46
HMGA1-202ENST00000347617 CHD4Q14839 1912 aa17.89■□□□□ 0.46
HMGA1-202ENST00000347617 A0A087WUV0 522 aaPredicted RBP17.89■□□□□ 0.45
HMGA1-202ENST00000347617 TARSL2A2RTX5 802 aaKnown RBP17.89■□□□□ 0.45
HMGA1-202ENST00000347617 SOCS7O14512 581 aa17.89■□□□□ 0.45
HMGA1-202ENST00000347617 DNAJC21Q5F1R6 531 aaKnown RBP17.89■□□□□ 0.45
HMGA1-202ENST00000347617 SPTY2D1Q68D10 685 aaPredicted RBP17.89■□□□□ 0.45
HMGA1-202ENST00000347617 LRRC31Q6UY01 552 aa17.89■□□□□ 0.45
HMGA1-202ENST00000347617 NOSTRINQ8IVI9 506 aa17.89■□□□□ 0.45
HMGA1-202ENST00000347617 ANKIB1Q9P2G1 1089 aa17.89■□□□□ 0.45
HMGA1-202ENST00000347617 MYH8P13535 1937 aa17.89■□□□□ 0.45
HMGA1-202ENST00000347617 WTIPA6NIX2 430 aaPredicted RBP17.89■□□□□ 0.45
HMGA1-202ENST00000347617 VSNL1P62760 191 aa17.89■□□□□ 0.45
HMGA1-202ENST00000347617 SPAG1Q07617 926 aa17.89■□□□□ 0.45
HMGA1-202ENST00000347617 SGMS1Q86VZ5 419 aa17.89■□□□□ 0.45
HMGA1-202ENST00000347617 SP8Q8IXZ3 490 aa17.89■□□□□ 0.45
HMGA1-202ENST00000347617 IFNL3Q8IZI9 196 aa17.89■□□□□ 0.45
HMGA1-202ENST00000347617 FOXP1Q9H334 677 aaPredicted RBP17.89■□□□□ 0.45
HMGA1-202ENST00000347617 DEF6Q9H4E7 631 aa17.89■□□□□ 0.45
HMGA1-202ENST00000347617 ADD3Q9UEY8 706 aaKnown RBP17.89■□□□□ 0.45
HMGA1-202ENST00000347617 FBXO2Q9UK22 296 aaPredicted RBP17.89■□□□□ 0.45
HMGA1-202ENST00000347617 COL1A1P02452 1464 aaPredicted RBP17.88■□□□□ 0.45
HMGA1-202ENST00000347617 GSG1L2A8MUP6 293 aa17.88■□□□□ 0.45
HMGA1-202ENST00000347617 ZBTB43O43298 467 aa17.88■□□□□ 0.45
HMGA1-202ENST00000347617 MBD4O95243 580 aa17.88■□□□□ 0.45
HMGA1-202ENST00000347617 CYP7A1P22680 504 aa17.88■□□□□ 0.45
HMGA1-202ENST00000347617 PDE6BP35913 854 aa17.88■□□□□ 0.45
HMGA1-202ENST00000347617 SSRP1Q08945 709 aaKnown RBP17.88■□□□□ 0.45
HMGA1-202ENST00000347617 RBL2Q08999 1139 aa17.88■□□□□ 0.45
HMGA1-202ENST00000347617 CDKAL1Q5VV42 579 aa17.88■□□□□ 0.45
HMGA1-202ENST00000347617 APOA5Q6Q788 366 aa17.88■□□□□ 0.45
HMGA1-202ENST00000347617 CYP26C1Q6V0L0 522 aa17.88■□□□□ 0.45
HMGA1-202ENST00000347617 ZNF804AQ7Z570 1209 aa17.88■□□□□ 0.45
HMGA1-202ENST00000347617 SLC35F6Q8N357 371 aa17.88■□□□□ 0.45
HMGA1-202ENST00000347617 PLCD3Q8N3E9 789 aa17.88■□□□□ 0.45
HMGA1-202ENST00000347617 WDR66Q8TBY9 1149 aa17.88■□□□□ 0.45
HMGA1-202ENST00000347617 RUBCNQ92622 972 aa17.88■□□□□ 0.45
HMGA1-202ENST00000347617 MYO6Q9UM54 1294 aa17.88■□□□□ 0.45
HMGA1-202ENST00000347617 SRPRBQ9Y5M8 271 aaKnown RBP17.88■□□□□ 0.45
HMGA1-202ENST00000347617 SYNRGQ9UMZ2 1314 aa17.87■□□□□ 0.45
HMGA1-202ENST00000347617 A6NNZ2 444 aa17.87■□□□□ 0.45
HMGA1-202ENST00000347617 APPP05067 770 aa17.87■□□□□ 0.45
HMGA1-202ENST00000347617 HAND2P61296 217 aa17.87■□□□□ 0.45
HMGA1-202ENST00000347617 CKAP4Q07065 602 aaKnown RBP17.87■□□□□ 0.45
HMGA1-202ENST00000347617 TUBB8Q3ZCM7 444 aa17.87■□□□□ 0.45
HMGA1-202ENST00000347617 APTXQ7Z2E3 356 aaKnown RBP17.87■□□□□ 0.45
HMGA1-202ENST00000347617 CAMKK2Q96RR4 588 aa17.87■□□□□ 0.45
HMGA1-202ENST00000347617 MTA3Q9BTC8 594 aa17.87■□□□□ 0.45
HMGA1-202ENST00000347617 ZSWIM4Q9H7M6 989 aa17.87■□□□□ 0.45
HMGA1-202ENST00000347617 GJB4Q9NTQ9 266 aa17.87■□□□□ 0.45
HMGA1-202ENST00000347617 ABCF2Q9UG63 623 aa17.87■□□□□ 0.45
HMGA1-202ENST00000347617 SERTAD1Q9UHV2 236 aa17.87■□□□□ 0.45
HMGA1-202ENST00000347617 FMNL1O95466 1100 aaPredicted RBP17.86■□□□□ 0.45
HMGA1-202ENST00000347617 NPR1P16066 1061 aa17.86■□□□□ 0.45
HMGA1-202ENST00000347617 ALDH1B1P30837 517 aa17.86■□□□□ 0.45
HMGA1-202ENST00000347617 LIFRP42702 1097 aa17.86■□□□□ 0.45
HMGA1-202ENST00000347617 MTF1Q14872 753 aa17.86■□□□□ 0.45
HMGA1-202ENST00000347617 STK11IPQ8N1F8 1099 aa17.86■□□□□ 0.45
HMGA1-202ENST00000347617 FAM204AQ9H8W3 233 aa17.86■□□□□ 0.45
HMGA1-202ENST00000347617 SAMSN1Q9NSI8 373 aaKnown RBP17.86■□□□□ 0.45
HMGA1-202ENST00000347617 EP400Q96L91 3159 aa17.86■□□□□ 0.45
HMGA1-202ENST00000347617 CACNA1SQ13698 1873 aa17.86■□□□□ 0.45
HMGA1-202ENST00000347617 MAGEB6P1A0A0J9YX57 407 aa17.86■□□□□ 0.45
HMGA1-202ENST00000347617 GOLGA8AA7E2F4 631 aa17.86■□□□□ 0.45
HMGA1-202ENST00000347617 POLR2DO15514 142 aaKnown RBP17.86■□□□□ 0.45
HMGA1-202ENST00000347617 ACTN4O43707 911 aaKnown RBP17.86■□□□□ 0.45
HMGA1-202ENST00000347617 ATP2B1P20020 1258 aa17.86■□□□□ 0.45
HMGA1-202ENST00000347617 KLRK1P26718 216 aa17.86■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms