RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 BLIDQ8IZY5 108 aa17.56■□□□□ 0.4
UPF3B-202ENST00000345865 CCDC94Q9BW85 323 aaPredicted RBP17.56■□□□□ 0.4
UPF3B-202ENST00000345865 PPP1R3GB7ZBB8 358 aa17.56■□□□□ 0.4
UPF3B-202ENST00000345865 UFL1O94874 794 aa17.56■□□□□ 0.4
UPF3B-202ENST00000345865 GYS1P13807 737 aa17.56■□□□□ 0.4
UPF3B-202ENST00000345865 GSTO1P78417 241 aa17.56■□□□□ 0.4
UPF3B-202ENST00000345865 NR1I3Q14994 352 aa17.56■□□□□ 0.4
UPF3B-202ENST00000345865 PPP4R3BQ5MIZ7 849 aa17.56■□□□□ 0.4
UPF3B-202ENST00000345865 PDXDC2PQ6P474 469 aa17.56■□□□□ 0.4
UPF3B-202ENST00000345865 TC2NQ8N9U0 490 aa17.56■□□□□ 0.4
UPF3B-202ENST00000345865 CERKQ8TCT0 537 aa17.56■□□□□ 0.4
UPF3B-202ENST00000345865 TMEM47Q9BQJ4 181 aa17.56■□□□□ 0.4
UPF3B-202ENST00000345865 BLZF1Q9H2G9 400 aa17.56■□□□□ 0.4
UPF3B-202ENST00000345865 BTDP43251 543 aa17.55■□□□□ 0.4
UPF3B-202ENST00000345865 RPGRQ92834 1020 aaKnown RBP17.55■□□□□ 0.4
UPF3B-202ENST00000345865 GSDMAQ96QA5 445 aa17.55■□□□□ 0.4
UPF3B-202ENST00000345865 TCP11L1Q9NUJ3 509 aa17.55■□□□□ 0.4
UPF3B-202ENST00000345865 PCDHA4Q9UN74 947 aa17.55■□□□□ 0.4
UPF3B-202ENST00000345865 UBR3Q6ZT12 1888 aa17.55■□□□□ 0.4
UPF3B-202ENST00000345865 FANCGO15287 622 aa17.55■□□□□ 0.4
UPF3B-202ENST00000345865 TEX33O43247 280 aa17.55■□□□□ 0.4
UPF3B-202ENST00000345865 ADKP55263 362 aaKnown RBP17.55■□□□□ 0.4
UPF3B-202ENST00000345865 SPECC1LQ69YQ0 1117 aa17.55■□□□□ 0.4
UPF3B-202ENST00000345865 WWC2Q6AWC2 1192 aa17.55■□□□□ 0.4
UPF3B-202ENST00000345865 REXO1L1PQ8IX06 675 aa17.55■□□□□ 0.4
UPF3B-202ENST00000345865 ZNF444Q8N0Y2 327 aaPredicted RBP17.55■□□□□ 0.4
UPF3B-202ENST00000345865 CPVLQ9H3G5 476 aa17.55■□□□□ 0.4
UPF3B-202ENST00000345865 STX8Q9UNK0 236 aa17.55■□□□□ 0.4
UPF3B-202ENST00000345865 A0A1B0GTH6 734 aa17.54■□□□□ 0.4
UPF3B-202ENST00000345865 KIF2AO00139 706 aaPredicted RBP17.54■□□□□ 0.4
UPF3B-202ENST00000345865 NRDCO43847 1150 aa17.54■□□□□ 0.4
UPF3B-202ENST00000345865 COBLO75128 1261 aa17.54■□□□□ 0.4
UPF3B-202ENST00000345865 GOLGA8HP0CJ92 632 aa17.54■□□□□ 0.4
UPF3B-202ENST00000345865 NOL12Q9UGY1 213 aaKnown RBP eCLIP17.54■□□□□ 0.4
UPF3B-202ENST00000345865 V9GYY5 206 aaPredicted RBP17.54■□□□□ 0.4
UPF3B-202ENST00000345865 DDX60LQ5H9U9 1706 aaKnown RBP17.54■□□□□ 0.4
UPF3B-202ENST00000345865 PALM3A6NDB9 673 aaPredicted RBP17.54■□□□□ 0.4
UPF3B-202ENST00000345865 SERPINB2P05120 415 aa17.54■□□□□ 0.4
UPF3B-202ENST00000345865 IL1R1P14778 569 aa17.54■□□□□ 0.4
UPF3B-202ENST00000345865 CALML3P27482 149 aa17.54■□□□□ 0.4
UPF3B-202ENST00000345865 SPATA1Q5VX52 437 aa17.54■□□□□ 0.4
UPF3B-202ENST00000345865 TRIM65Q6PJ69 517 aa17.54■□□□□ 0.4
UPF3B-202ENST00000345865 SH3GLB2Q9NR46 395 aa17.54■□□□□ 0.4
UPF3B-202ENST00000345865 POLLQ9UGP5 575 aa17.54■□□□□ 0.4
UPF3B-202ENST00000345865 PCDHA6Q9UN73 950 aa17.54■□□□□ 0.4
UPF3B-202ENST00000345865 PCDHA8Q9Y5H6 950 aa17.54■□□□□ 0.4
UPF3B-202ENST00000345865 SNED1Q8TER0 1413 aa17.54■□□□□ 0.4
UPF3B-202ENST00000345865 GPR75-ASB3A0A0A6YYF3 556 aa17.53■□□□□ 0.4
UPF3B-202ENST00000345865 LDHCP07864 332 aa17.53■□□□□ 0.4
UPF3B-202ENST00000345865 IQUBQ8NA54 791 aa17.53■□□□□ 0.4
UPF3B-202ENST00000345865 CCDC34Q96HJ3 373 aa17.53■□□□□ 0.4
UPF3B-202ENST00000345865 SYNRGQ9UMZ2 1314 aa17.53■□□□□ 0.4
UPF3B-202ENST00000345865 IGSF3O75054 1194 aa17.53■□□□□ 0.4
UPF3B-202ENST00000345865 CDK8P49336 464 aa17.53■□□□□ 0.4
UPF3B-202ENST00000345865 CDKAL1Q5VV42 579 aa17.53■□□□□ 0.4
UPF3B-202ENST00000345865 TMEM60Q9H2L4 133 aa17.53■□□□□ 0.4
UPF3B-202ENST00000345865 L2HGDHQ9H9P8 463 aa17.53■□□□□ 0.4
UPF3B-202ENST00000345865 SPATA31A6Q5VVP1 1343 aa17.52■□□□□ 0.4
UPF3B-202ENST00000345865 GOLGB1Q14789 3259 aaKnown RBP17.52■□□□□ 0.4
UPF3B-202ENST00000345865 STXBP3O00186 592 aa17.52■□□□□ 0.4
UPF3B-202ENST00000345865 ADRA2BP18089 450 aa17.52■□□□□ 0.4
UPF3B-202ENST00000345865 RHBDL3P58872 404 aa17.52■□□□□ 0.4
UPF3B-202ENST00000345865 CT47A1Q5JQC4 288 aaPredicted RBP17.52■□□□□ 0.4
UPF3B-202ENST00000345865 ARL6IP4Q66PJ3 421 aaKnown RBP17.52■□□□□ 0.4
UPF3B-202ENST00000345865 LRRN4CLQ8ND94 238 aa17.52■□□□□ 0.4
UPF3B-202ENST00000345865 GGA1Q9UJY5 639 aa17.52■□□□□ 0.4
UPF3B-202ENST00000345865 ONECUT3O60422 494 aaPredicted RBP17.52■□□□□ 0.39
UPF3B-202ENST00000345865 ATP2B4P23634 1241 aa17.52■□□□□ 0.39
UPF3B-202ENST00000345865 ETF1P62495 437 aaKnown RBP17.52■□□□□ 0.39
UPF3B-202ENST00000345865 CCDC93Q567U6 631 aa17.52■□□□□ 0.39
UPF3B-202ENST00000345865 HEATR3Q7Z4Q2 680 aa17.52■□□□□ 0.39
UPF3B-202ENST00000345865 AMOTL1Q8IY63 956 aa17.52■□□□□ 0.39
UPF3B-202ENST00000345865 TEX11Q8IYF3 940 aa17.52■□□□□ 0.39
UPF3B-202ENST00000345865 SEPT12Q8IYM1 358 aa17.52■□□□□ 0.39
UPF3B-202ENST00000345865 BAG1Q99933 345 aaPredicted RBP17.52■□□□□ 0.39
UPF3B-202ENST00000345865 BARHL2Q9NY43 387 aa17.52■□□□□ 0.39
UPF3B-202ENST00000345865 PP2D1A8MPX8 630 aa17.51■□□□□ 0.39
UPF3B-202ENST00000345865 ARHGAP6O43182 974 aa17.51■□□□□ 0.39
UPF3B-202ENST00000345865 NT5C2P49902 561 aa17.51■□□□□ 0.39
UPF3B-202ENST00000345865 GNAQP50148 359 aa17.51■□□□□ 0.39
UPF3B-202ENST00000345865 KARSQ15046 597 aaKnown RBP17.51■□□□□ 0.39
UPF3B-202ENST00000345865 GLIPR1L2Q4G1C9 344 aa17.51■□□□□ 0.39
UPF3B-202ENST00000345865 C16orf86Q6ZW13 317 aa17.51■□□□□ 0.39
UPF3B-202ENST00000345865 HOMER1Q86YM7 354 aa17.51■□□□□ 0.39
UPF3B-202ENST00000345865 ADD3Q9UEY8 706 aaKnown RBP17.51■□□□□ 0.39
UPF3B-202ENST00000345865 FLT1P17948 1338 aa17.51■□□□□ 0.39
UPF3B-202ENST00000345865 KLRF2D3W0D1 207 aa17.5■□□□□ 0.39
UPF3B-202ENST00000345865 LONP1P36776 959 aaKnown RBP17.5■□□□□ 0.39
UPF3B-202ENST00000345865 DDR1Q08345 913 aa17.5■□□□□ 0.39
UPF3B-202ENST00000345865 INF2Q27J81 1249 aa17.5■□□□□ 0.39
UPF3B-202ENST00000345865 MFSD14BQ5SR56 506 aa17.5■□□□□ 0.39
UPF3B-202ENST00000345865 TBC1D16Q8TBP0 767 aa17.5■□□□□ 0.39
UPF3B-202ENST00000345865 EYA3Q99504 573 aa17.5■□□□□ 0.39
UPF3B-202ENST00000345865 CTNND2Q9UQB3 1225 aa17.5■□□□□ 0.39
UPF3B-202ENST00000345865 PPP2R2CQ9Y2T4 447 aa17.5■□□□□ 0.39
UPF3B-202ENST00000345865 MYH1P12882 1939 aa17.5■□□□□ 0.39
UPF3B-202ENST00000345865 SLU7O95391 586 aaKnown RBP17.5■□□□□ 0.39
UPF3B-202ENST00000345865 PBX1P40424 430 aa17.5■□□□□ 0.39
UPF3B-202ENST00000345865 NAALADL2Q58DX5 795 aa17.5■□□□□ 0.39
UPF3B-202ENST00000345865 CCDC178Q5BJE1 867 aa17.5■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms