RNA–Protein interactions for RNA: ENST00000342245.8

SMPD1-201, Transcript of sphingomyelin phosphodiesterase 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SMPD1, Length 2,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD1-201ENST00000342245 COPRSQ9NQ92 184 aa20.67■□□□□ 0.9
SMPD1-201ENST00000342245 HAUS2Q9NVX0 235 aa20.67■□□□□ 0.9
SMPD1-201ENST00000342245 IDEP14735 1019 aa20.67■□□□□ 0.9
SMPD1-201ENST00000342245 CYLC1P35663 651 aaPredicted RBP20.67■□□□□ 0.9
SMPD1-201ENST00000342245 ATP6V1G3Q96LB4 118 aa20.67■□□□□ 0.9
SMPD1-201ENST00000342245 PDE2AO00408 941 aaPredicted RBP20.66■□□□□ 0.9
SMPD1-201ENST00000342245 PRC1O43663 620 aa20.66■□□□□ 0.9
SMPD1-201ENST00000342245 ACTN4O43707 911 aaKnown RBP20.66■□□□□ 0.9
SMPD1-201ENST00000342245 RIPK1Q13546 671 aa20.66■□□□□ 0.9
SMPD1-201ENST00000342245 KDM4CQ9H3R0 1056 aa20.66■□□□□ 0.9
SMPD1-201ENST00000342245 JADE2Q9NQC1 790 aa20.66■□□□□ 0.9
SMPD1-201ENST00000342245 UBN2Q6ZU65 1347 aa20.66■□□□□ 0.9
SMPD1-201ENST00000342245 GMNCA6NCL1 334 aa20.66■□□□□ 0.9
SMPD1-201ENST00000342245 RPS6KA3P51812 740 aa20.66■□□□□ 0.9
SMPD1-201ENST00000342245 IFT20Q8IY31 132 aa20.66■□□□□ 0.9
SMPD1-201ENST00000342245 CUL5Q93034 780 aa20.66■□□□□ 0.9
SMPD1-201ENST00000342245 GSDMAQ96QA5 445 aa20.66■□□□□ 0.9
SMPD1-201ENST00000342245 SPAG5Q96R06 1193 aa20.66■□□□□ 0.9
SMPD1-201ENST00000342245 LRRC1Q9BTT6 524 aa20.66■□□□□ 0.9
SMPD1-201ENST00000342245 GJB4Q9NTQ9 266 aa20.66■□□□□ 0.9
SMPD1-201ENST00000342245 TRIM10Q9UDY6 481 aa20.66■□□□□ 0.9
SMPD1-201ENST00000342245 DDX58O95786 925 aaKnown RBP20.65■□□□□ 0.9
SMPD1-201ENST00000342245 IBSPP21815 317 aaPredicted RBP20.65■□□□□ 0.9
SMPD1-201ENST00000342245 SCTRP47872 440 aa20.65■□□□□ 0.9
SMPD1-201ENST00000342245 ZC3H12AQ5D1E8 599 aaKnown RBP20.65■□□□□ 0.9
SMPD1-201ENST00000342245 SH2D3CQ8N5H7 860 aa20.65■□□□□ 0.9
SMPD1-201ENST00000342245 NGDNQ8NEJ9 315 aaKnown RBP20.65■□□□□ 0.9
SMPD1-201ENST00000342245 DNAJC7Q99615 494 aa20.65■□□□□ 0.9
SMPD1-201ENST00000342245 PLCD4Q9BRC7 762 aa20.65■□□□□ 0.9
SMPD1-201ENST00000342245 SNX12Q9UMY4 172 aa20.65■□□□□ 0.9
SMPD1-201ENST00000342245 EID1Q9Y6B2 187 aa20.65■□□□□ 0.9
SMPD1-201ENST00000342245 MST1RQ04912 1400 aa20.65■□□□□ 0.9
SMPD1-201ENST00000342245 BUB1BO60566 1050 aaPredicted RBP20.65■□□□□ 0.9
SMPD1-201ENST00000342245 ATP6V1G2O95670 118 aa20.65■□□□□ 0.9
SMPD1-201ENST00000342245 HERVK_113P62684 666 aa20.65■□□□□ 0.9
SMPD1-201ENST00000342245 KRT31Q15323 416 aa20.65■□□□□ 0.9
SMPD1-201ENST00000342245 IMMTQ16891 758 aaKnown RBP20.65■□□□□ 0.9
SMPD1-201ENST00000342245 MSL1Q68DK7 614 aa20.65■□□□□ 0.9
SMPD1-201ENST00000342245 CAPRIN2Q6IMN6 1127 aaKnown RBP20.65■□□□□ 0.9
SMPD1-201ENST00000342245 DDX46Q7L014 1031 aaKnown RBP20.65■□□□□ 0.9
SMPD1-201ENST00000342245 PURBQ96QR8 312 aaKnown RBP20.65■□□□□ 0.9
SMPD1-201ENST00000342245 FBXO2Q9UK22 296 aaPredicted RBP20.65■□□□□ 0.9
SMPD1-201ENST00000342245 CEP131Q9UPN4 1083 aa20.65■□□□□ 0.9
SMPD1-201ENST00000342245 RIPOR2Q9Y4F9 1068 aa20.65■□□□□ 0.9
SMPD1-201ENST00000342245 SH2B2O14492 632 aaPredicted RBP20.64■□□□□ 0.9
SMPD1-201ENST00000342245 RPSAP08865 295 aaKnown RBP20.64■□□□□ 0.9
SMPD1-201ENST00000342245 COPB1P53618 953 aaKnown RBP20.64■□□□□ 0.9
SMPD1-201ENST00000342245 KCTD16Q68DU8 428 aa20.64■□□□□ 0.9
SMPD1-201ENST00000342245 CREG2Q8IUH2 290 aa20.64■□□□□ 0.9
SMPD1-201ENST00000342245 CCDC170Q8IYT3 715 aa20.64■□□□□ 0.9
SMPD1-201ENST00000342245 OSBPL7Q9BZF2 842 aa20.64■□□□□ 0.9
SMPD1-201ENST00000342245 TRPC6Q9Y210 931 aa20.64■□□□□ 0.9
SMPD1-201ENST00000342245 SLC5A9Q2M3M2 681 aa20.64■□□□□ 0.89
SMPD1-201ENST00000342245 CWF19L2Q2TBE0 894 aaKnown RBP20.64■□□□□ 0.89
SMPD1-201ENST00000342245 SPATA4Q8NEY3 305 aa20.64■□□□□ 0.89
SMPD1-201ENST00000342245 TRIM58Q8NG06 486 aa20.64■□□□□ 0.89
SMPD1-201ENST00000342245 CHP1Q99653 195 aa20.64■□□□□ 0.89
SMPD1-201ENST00000342245 NOD2Q9HC29 1040 aa20.64■□□□□ 0.89
SMPD1-201ENST00000342245 DMGDHQ9UI17 866 aaKnown RBP20.64■□□□□ 0.89
SMPD1-201ENST00000342245 CORO1CQ9ULV4 474 aaPredicted RBP20.64■□□□□ 0.89
SMPD1-201ENST00000342245 ERICH2A1L162 156 aa20.63■□□□□ 0.89
SMPD1-201ENST00000342245 C5orf60A6NFR6 353 aa20.63■□□□□ 0.89
SMPD1-201ENST00000342245 DNM1LO00429 736 aa20.63■□□□□ 0.89
SMPD1-201ENST00000342245 PPP1R12BO60237 982 aaPredicted RBP20.63■□□□□ 0.89
SMPD1-201ENST00000342245 SSBP05455 408 aaKnown RBP eCLIP20.63■□□□□ 0.89
SMPD1-201ENST00000342245 TCP1P17987 556 aaKnown RBP20.63■□□□□ 0.89
SMPD1-201ENST00000342245 PAK2Q13177 524 aa20.63■□□□□ 0.89
SMPD1-201ENST00000342245 ITGB3BPQ13352 177 aaPredicted RBP20.63■□□□□ 0.89
SMPD1-201ENST00000342245 MB21D2Q8IYB1 491 aaPredicted RBP20.63■□□□□ 0.89
SMPD1-201ENST00000342245 CACNA2D3Q8IZS8 1091 aa20.63■□□□□ 0.89
SMPD1-201ENST00000342245 STK11IPQ8N1F8 1099 aa20.63■□□□□ 0.89
SMPD1-201ENST00000342245 NCOA7Q8NI08 942 aa20.63■□□□□ 0.89
SMPD1-201ENST00000342245 TMX4Q9H1E5 349 aaPredicted RBP20.63■□□□□ 0.89
SMPD1-201ENST00000342245 LUC7L2Q9Y383 392 aaKnown RBP20.63■□□□□ 0.89
SMPD1-201ENST00000342245 GOLGA6L10A6NI86 522 aa20.63■□□□□ 0.89
SMPD1-201ENST00000342245 SKAP2O75563 359 aaPredicted RBP20.63■□□□□ 0.89
SMPD1-201ENST00000342245 NEFHP12036 1026 aa20.63■□□□□ 0.89
SMPD1-201ENST00000342245 SEC24CP53992 1094 aa20.63■□□□□ 0.89
SMPD1-201ENST00000342245 TTF1Q15361 905 aaPredicted RBP20.63■□□□□ 0.89
SMPD1-201ENST00000342245 C15orf41Q9Y2V0 281 aa20.63■□□□□ 0.89
SMPD1-201ENST00000342245 CPDO75976 1380 aa20.63■□□□□ 0.89
SMPD1-201ENST00000342245 ZNF233A6NK53 670 aa20.62■□□□□ 0.89
SMPD1-201ENST00000342245 KRT14P02533 472 aa20.62■□□□□ 0.89
SMPD1-201ENST00000342245 KLHL10Q6JEL2 608 aa20.62■□□□□ 0.89
SMPD1-201ENST00000342245 BZW1Q7L1Q6 419 aaKnown RBP20.62■□□□□ 0.89
SMPD1-201ENST00000342245 CCDC155Q8N6L0 562 aa20.62■□□□□ 0.89
SMPD1-201ENST00000342245 PARD3BQ8TEW8 1205 aa20.62■□□□□ 0.89
SMPD1-201ENST00000342245 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP20.62■□□□□ 0.89
SMPD1-201ENST00000342245 OSBPL9Q96SU4 736 aa20.62■□□□□ 0.89
SMPD1-201ENST00000342245 BCL9LQ86UU0 1499 aa20.62■□□□□ 0.89
SMPD1-201ENST00000342245 ZNF185O15231 689 aa20.62■□□□□ 0.89
SMPD1-201ENST00000342245 RILPL1Q5EBL4 403 aa20.62■□□□□ 0.89
SMPD1-201ENST00000342245 NSMCE1Q8WV22 266 aa20.62■□□□□ 0.89
SMPD1-201ENST00000342245 BORCS6Q96GS4 357 aa20.62■□□□□ 0.89
SMPD1-201ENST00000342245 CCDC43Q96MW1 224 aaKnown RBP20.62■□□□□ 0.89
SMPD1-201ENST00000342245 SLC39A2Q9NP94 309 aa20.62■□□□□ 0.89
SMPD1-201ENST00000342245 PAG1Q9NWQ8 432 aa20.62■□□□□ 0.89
SMPD1-201ENST00000342245 SRPRBQ9Y5M8 271 aaKnown RBP20.62■□□□□ 0.89
SMPD1-201ENST00000342245 SPEF2Q9C093 1822 aa20.61■□□□□ 0.89
SMPD1-201ENST00000342245 A0A1W2PQC6 194 aa20.61■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms