RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 RUFY1Q96T51 708 aa11.42□□□□□ -0.58
USP54-201ENST00000339859 ZNF70Q9UC06 446 aaPredicted RBP11.42□□□□□ -0.58
USP54-201ENST00000339859 SERPINA10Q9UK55 444 aa11.42□□□□□ -0.58
USP54-201ENST00000339859 PARP4Q9UKK3 1724 aaKnown RBP11.42□□□□□ -0.58
USP54-201ENST00000339859 ENTPD3O75355 529 aa11.42□□□□□ -0.58
USP54-201ENST00000339859 ZNF157P51786 506 aaPredicted RBP11.42□□□□□ -0.58
USP54-201ENST00000339859 CNNM4Q6P4Q7 775 aa11.42□□□□□ -0.58
USP54-201ENST00000339859 EXOC8Q8IYI6 725 aa11.42□□□□□ -0.58
USP54-201ENST00000339859 OTUD5Q96G74 571 aa11.42□□□□□ -0.58
USP54-201ENST00000339859 ANKRD26Q9UPS8 1709 aa11.42□□□□□ -0.58
USP54-201ENST00000339859 CUTAO60888 179 aa11.42□□□□□ -0.58
USP54-201ENST00000339859 PRR16Q569H4 304 aa11.42□□□□□ -0.58
USP54-201ENST00000339859 STAG1Q8WVM7 1258 aa11.42□□□□□ -0.58
USP54-201ENST00000339859 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP11.42□□□□□ -0.58
USP54-201ENST00000339859 DDX25Q9UHL0 483 aaKnown RBP11.42□□□□□ -0.58
USP54-201ENST00000339859 UBN2Q6ZU65 1347 aa11.42□□□□□ -0.58
USP54-201ENST00000339859 ABCC6O95255 1503 aa11.42□□□□□ -0.58
USP54-201ENST00000339859 CDR1P51861 262 aa11.41□□□□□ -0.58
USP54-201ENST00000339859 MIS18BP1Q6P0N0 1132 aa11.41□□□□□ -0.58
USP54-201ENST00000339859 NEK8Q86SG6 692 aa11.41□□□□□ -0.58
USP54-201ENST00000339859 ZNF512BQ96KM6 892 aaPredicted RBP11.41□□□□□ -0.58
USP54-201ENST00000339859 PLIN2Q99541 437 aa11.41□□□□□ -0.58
USP54-201ENST00000339859 RTN4Q9NQC3 1192 aaKnown RBP11.41□□□□□ -0.58
USP54-201ENST00000339859 KCNJ14Q9UNX9 436 aa11.41□□□□□ -0.58
USP54-201ENST00000339859 BMS1Q14692 1282 aaKnown RBP11.41□□□□□ -0.58
USP54-201ENST00000339859 TDRD12Q587J7 1177 aaKnown RBP11.41□□□□□ -0.58
USP54-201ENST00000339859 IQCEQ6IPM2 695 aa11.41□□□□□ -0.58
USP54-201ENST00000339859 SYNCQ9H7C4 482 aa11.41□□□□□ -0.58
USP54-201ENST00000339859 TMOD1P28289 359 aa11.41□□□□□ -0.58
USP54-201ENST00000339859 ATG9AQ7Z3C6 839 aa11.41□□□□□ -0.58
USP54-201ENST00000339859 FNBP1Q96RU3 617 aa11.41□□□□□ -0.58
USP54-201ENST00000339859 GGA3Q9NZ52 723 aa11.41□□□□□ -0.58
USP54-201ENST00000339859 SRGNP10124 158 aa11.41□□□□□ -0.58
USP54-201ENST00000339859 SNAPC2Q13487 334 aa11.41□□□□□ -0.58
USP54-201ENST00000339859 SPOUT1Q5T280 376 aaKnown RBP11.41□□□□□ -0.58
USP54-201ENST00000339859 UTP14CQ5TAP6 766 aaKnown RBP11.41□□□□□ -0.58
USP54-201ENST00000339859 ANGEL2Q5VTE6 544 aaKnown RBP11.41□□□□□ -0.58
USP54-201ENST00000339859 PI4K2BQ8TCG2 481 aa11.41□□□□□ -0.58
USP54-201ENST00000339859 H0YCG3 227 aa11.41□□□□□ -0.58
USP54-201ENST00000339859 FDX1P10109 184 aa11.41□□□□□ -0.58
USP54-201ENST00000339859 ILDR1Q86SU0 546 aaPredicted RBP11.41□□□□□ -0.58
USP54-201ENST00000339859 ZNF589Q86UQ0 364 aaPredicted RBP11.41□□□□□ -0.58
USP54-201ENST00000339859 hCG_1642624A0A1W2PR95 340 aa11.4□□□□□ -0.58
USP54-201ENST00000339859 PALM3A6NDB9 673 aaPredicted RBP11.4□□□□□ -0.58
USP54-201ENST00000339859 EPB41P11171 864 aaKnown RBP11.4□□□□□ -0.58
USP54-201ENST00000339859 CDC37L1Q7L3B6 337 aa11.4□□□□□ -0.58
USP54-201ENST00000339859 CABP7Q86V35 215 aa11.4□□□□□ -0.58
USP54-201ENST00000339859 CDC37Q16543 378 aaPredicted RBP11.4□□□□□ -0.58
USP54-201ENST00000339859 ZBTB8OSQ8IWT0 167 aa11.4□□□□□ -0.58
USP54-201ENST00000339859 MSANTD4Q8NCY6 345 aa11.4□□□□□ -0.58
USP54-201ENST00000339859 ECE1P42892 770 aa11.4□□□□□ -0.58
USP54-201ENST00000339859 METTL13Q8N6R0 699 aa11.4□□□□□ -0.58
USP54-201ENST00000339859 GPKOWQ92917 476 aaPredicted RBP eCLIP11.4□□□□□ -0.58
USP54-201ENST00000339859 ELP3Q9H9T3 547 aa11.4□□□□□ -0.58
USP54-201ENST00000339859 ZFYVE28Q9HCC9 887 aa11.4□□□□□ -0.58
USP54-201ENST00000339859 ZHX1Q9UKY1 873 aaPredicted RBP11.4□□□□□ -0.58
USP54-201ENST00000339859 NR1I2O75469 434 aa11.4□□□□□ -0.58
USP54-201ENST00000339859 ZNF215Q9UL58 517 aaPredicted RBP11.4□□□□□ -0.58
USP54-201ENST00000339859 GINS2Q9Y248 185 aa11.4□□□□□ -0.58
USP54-201ENST00000339859 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP11.4□□□□□ -0.58
USP54-201ENST00000339859 USP17L15C9J2P7 530 aa11.4□□□□□ -0.59
USP54-201ENST00000339859 USP17L13C9JLJ4 530 aa11.4□□□□□ -0.59
USP54-201ENST00000339859 USP17L11C9JVI0 530 aa11.4□□□□□ -0.59
USP54-201ENST00000339859 USP17L18D6R9N7 530 aa11.4□□□□□ -0.59
USP54-201ENST00000339859 USP17L22D6RA61 530 aa11.4□□□□□ -0.59
USP54-201ENST00000339859 USP17L17D6RBQ6 530 aa11.4□□□□□ -0.59
USP54-201ENST00000339859 USP17L19D6RCP7 530 aa11.4□□□□□ -0.59
USP54-201ENST00000339859 USP17L20D6RJB6 530 aa11.4□□□□□ -0.59
USP54-201ENST00000339859 CELF2O95319 508 aaKnown RBP11.4□□□□□ -0.59
USP54-201ENST00000339859 USP17L24Q0WX57 530 aa11.4□□□□□ -0.59
USP54-201ENST00000339859 MFSD14CQ5VZR4 134 aa11.4□□□□□ -0.59
USP54-201ENST00000339859 SEPT14Q6ZU15 432 aa11.4□□□□□ -0.59
USP54-201ENST00000339859 DGKHQ86XP1 1220 aa11.4□□□□□ -0.59
USP54-201ENST00000339859 TPH2Q8IWU9 490 aa11.4□□□□□ -0.59
USP54-201ENST00000339859 JPH2Q9BR39 696 aaPredicted RBP11.4□□□□□ -0.59
USP54-201ENST00000339859 RNF26Q9BY78 433 aaPredicted RBP11.4□□□□□ -0.59
USP54-201ENST00000339859 ACBD3Q9H3P7 528 aa11.4□□□□□ -0.59
USP54-201ENST00000339859 PCDHA4Q9UN74 947 aa11.4□□□□□ -0.59
USP54-201ENST00000339859 PNMA6FA0A0J9YX94 578 aa11.39□□□□□ -0.59
USP54-201ENST00000339859 SH2B2O14492 632 aaPredicted RBP11.39□□□□□ -0.59
USP54-201ENST00000339859 USO1O60763 962 aaKnown RBP11.39□□□□□ -0.59
USP54-201ENST00000339859 SYT1P21579 422 aa11.39□□□□□ -0.59
USP54-201ENST00000339859 RBM46Q8TBY0 533 aaKnown RBP11.39□□□□□ -0.59
USP54-201ENST00000339859 DAGLAQ9Y4D2 1042 aa11.39□□□□□ -0.59
USP54-201ENST00000339859 EPHX2P34913 555 aa11.39□□□□□ -0.59
USP54-201ENST00000339859 FMNL3Q8IVF7 1028 aa11.39□□□□□ -0.59
USP54-201ENST00000339859 PARK7Q99497 189 aaKnown RBP11.39□□□□□ -0.59
USP54-201ENST00000339859 ARGLU1Q9NWB6 273 aaPredicted RBP11.39□□□□□ -0.59
USP54-201ENST00000339859 HDLBPQ00341 1268 aaKnown RBP11.39□□□□□ -0.59
USP54-201ENST00000339859 ISM2Q6H9L7 571 aa11.39□□□□□ -0.59
USP54-201ENST00000339859 DEPTORQ8TB45 409 aa11.39□□□□□ -0.59
USP54-201ENST00000339859 MRVI1Q9Y6F6 885 aa11.39□□□□□ -0.59
USP54-201ENST00000339859 SLC16A2P36021 539 aa11.39□□□□□ -0.59
USP54-201ENST00000339859 RASA3Q14644 834 aa11.39□□□□□ -0.59
USP54-201ENST00000339859 FAM83BQ5T0W9 1011 aa11.39□□□□□ -0.59
USP54-201ENST00000339859 SIRT2Q8IXJ6 389 aa11.39□□□□□ -0.59
USP54-201ENST00000339859 DCP1AQ9NPI6 582 aaPredicted RBP11.39□□□□□ -0.59
USP54-201ENST00000339859 PPP2R3BQ9Y5P8 575 aa11.39□□□□□ -0.59
USP54-201ENST00000339859 NRXN3Q9Y4C0 1643 aa11.39□□□□□ -0.59
USP54-201ENST00000339859 TFDP1Q14186 410 aa11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 89.6 ms