RNA–Protein interactions for RNA: ENST00000339430.9

LITAF-201, Transcript of lipopolysaccharide induced TNF factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LITAF, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LITAF-201ENST00000339430 PPIP5K2O43314 1243 aa18.61■□□□□ 0.57
LITAF-201ENST00000339430 PRPF3O43395 683 aaKnown RBP18.61■□□□□ 0.57
LITAF-201ENST00000339430 ACTN4O43707 911 aaKnown RBP18.61■□□□□ 0.57
LITAF-201ENST00000339430 ECE2O60344 883 aa18.61■□□□□ 0.57
LITAF-201ENST00000339430 NOL12Q9UGY1 213 aaKnown RBP eCLIP18.61■□□□□ 0.57
LITAF-201ENST00000339430 V9GYY5 206 aaPredicted RBP18.61■□□□□ 0.57
LITAF-201ENST00000339430 GSTO1P78417 241 aa18.6■□□□□ 0.57
LITAF-201ENST00000339430 PPP2R5BQ15173 497 aa18.6■□□□□ 0.57
LITAF-201ENST00000339430 TMED8Q6PL24 325 aaPredicted RBP18.6■□□□□ 0.57
LITAF-201ENST00000339430 CERS5Q8N5B7 392 aa18.6■□□□□ 0.57
LITAF-201ENST00000339430 ZNF579Q8NAF0 562 aaKnown RBP18.6■□□□□ 0.57
LITAF-201ENST00000339430 DCP1AQ9NPI6 582 aaPredicted RBP18.6■□□□□ 0.57
LITAF-201ENST00000339430 A0A087X0B3 334 aa18.6■□□□□ 0.57
LITAF-201ENST00000339430 CASP1P29466 404 aa18.6■□□□□ 0.57
LITAF-201ENST00000339430 KIF18AQ8NI77 898 aa18.6■□□□□ 0.57
LITAF-201ENST00000339430 PSMD1Q99460 953 aa18.6■□□□□ 0.57
LITAF-201ENST00000339430 KCND1Q9NSA2 647 aa18.6■□□□□ 0.57
LITAF-201ENST00000339430 INTS13Q9NVM9 706 aa18.6■□□□□ 0.57
LITAF-201ENST00000339430 RBM28Q9NW13 759 aaKnown RBP18.6■□□□□ 0.57
LITAF-201ENST00000339430 NFE2L3Q9Y4A8 694 aa18.6■□□□□ 0.57
LITAF-201ENST00000339430 NRDCO43847 1150 aa18.59■□□□□ 0.57
LITAF-201ENST00000339430 IGSF3O75054 1194 aa18.59■□□□□ 0.57
LITAF-201ENST00000339430 TOP1P11387 765 aaKnown RBP18.59■□□□□ 0.57
LITAF-201ENST00000339430 AFMP43652 599 aa18.59■□□□□ 0.57
LITAF-201ENST00000339430 ZNF174Q15697 407 aa18.59■□□□□ 0.57
LITAF-201ENST00000339430 TMTC3Q6ZXV5 915 aa18.59■□□□□ 0.57
LITAF-201ENST00000339430 VSTM4Q8IW00 320 aa18.59■□□□□ 0.57
LITAF-201ENST00000339430 SRBD1Q8N5C6 995 aaKnown RBP18.59■□□□□ 0.57
LITAF-201ENST00000339430 CRNKL1Q9BZJ0 848 aaKnown RBP18.59■□□□□ 0.57
LITAF-201ENST00000339430 SPON1Q9HCB6 807 aa18.59■□□□□ 0.57
LITAF-201ENST00000339430 F8W031 263 aaPredicted RBP18.59■□□□□ 0.57
LITAF-201ENST00000339430 FGRP09769 529 aa18.59■□□□□ 0.57
LITAF-201ENST00000339430 SARSP49591 514 aaKnown RBP18.59■□□□□ 0.57
LITAF-201ENST00000339430 MORC3Q14149 939 aa18.59■□□□□ 0.57
LITAF-201ENST00000339430 ELOA2Q8IYF1 753 aaPredicted RBP18.59■□□□□ 0.57
LITAF-201ENST00000339430 ZNF277Q9NRM2 450 aaPredicted RBP18.59■□□□□ 0.57
LITAF-201ENST00000339430 ZNF215Q9UL58 517 aaPredicted RBP18.59■□□□□ 0.57
LITAF-201ENST00000339430 DDX52Q9Y2R4 599 aaKnown RBP eCLIP18.59■□□□□ 0.57
LITAF-201ENST00000339430 CNTNAP5Q8WYK1 1306 aa18.58■□□□□ 0.57
LITAF-201ENST00000339430 CDK11BP21127 795 aaKnown RBP18.58■□□□□ 0.56
LITAF-201ENST00000339430 CBX1P83916 185 aa18.58■□□□□ 0.56
LITAF-201ENST00000339430 SOGA3Q5TF21 947 aa18.58■□□□□ 0.56
LITAF-201ENST00000339430 NT5DC1Q5TFE4 455 aa18.58■□□□□ 0.56
LITAF-201ENST00000339430 SYT10Q6XYQ8 523 aa18.58■□□□□ 0.56
LITAF-201ENST00000339430 LAMB1P07942 1786 aa18.58■□□□□ 0.56
LITAF-201ENST00000339430 BRCA1P38398 1863 aaKnown RBP18.58■□□□□ 0.56
LITAF-201ENST00000339430 SPDYE4A6NLX3 237 aa18.57■□□□□ 0.56
LITAF-201ENST00000339430 LDHCP07864 332 aa18.57■□□□□ 0.56
LITAF-201ENST00000339430 CALM1P0DP23 149 aa18.57■□□□□ 0.56
LITAF-201ENST00000339430 CALM2P0DP24 149 aa18.57■□□□□ 0.56
LITAF-201ENST00000339430 CALM3P0DP25 149 aa18.57■□□□□ 0.56
LITAF-201ENST00000339430 VEGFAP15692 232 aaPredicted RBP18.57■□□□□ 0.56
LITAF-201ENST00000339430 NLGN2Q8NFZ4 835 aa18.57■□□□□ 0.56
LITAF-201ENST00000339430 CTCFLQ8NI51 663 aaPredicted RBP18.57■□□□□ 0.56
LITAF-201ENST00000339430 SYMPKQ92797 1274 aaKnown RBP18.57■□□□□ 0.56
LITAF-201ENST00000339430 BCS1LQ9Y276 419 aa18.57■□□□□ 0.56
LITAF-201ENST00000339430 DDAH1O94760 285 aa18.57■□□□□ 0.56
LITAF-201ENST00000339430 MED15Q96RN5 788 aa18.57■□□□□ 0.56
LITAF-201ENST00000339430 SCN9AQ15858 1988 aa18.57■□□□□ 0.56
LITAF-201ENST00000339430 TSPY2A6NKD2 308 aa18.56■□□□□ 0.56
LITAF-201ENST00000339430 ADAMTS3O15072 1205 aa18.56■□□□□ 0.56
LITAF-201ENST00000339430 USP17L8P0C7I0 530 aa18.56■□□□□ 0.56
LITAF-201ENST00000339430 NPY5RQ15761 445 aa18.56■□□□□ 0.56
LITAF-201ENST00000339430 MLKLQ8NB16 471 aa18.56■□□□□ 0.56
LITAF-201ENST00000339430 BRMS1Q9HCU9 246 aa18.56■□□□□ 0.56
LITAF-201ENST00000339430 SAMSN1Q9NSI8 373 aaKnown RBP18.56■□□□□ 0.56
LITAF-201ENST00000339430 BAG3O95817 575 aa18.56■□□□□ 0.56
LITAF-201ENST00000339430 PCP11498 1178 aaKnown RBP18.56■□□□□ 0.56
LITAF-201ENST00000339430 STRIP1Q5VSL9 837 aa18.56■□□□□ 0.56
LITAF-201ENST00000339430 KANK3Q6NY19 840 aa18.56■□□□□ 0.56
LITAF-201ENST00000339430 LARGE2Q8N3Y3 721 aa18.56■□□□□ 0.56
LITAF-201ENST00000339430 STAMQ92783 540 aa18.56■□□□□ 0.56
LITAF-201ENST00000339430 NOL10Q9BSC4 688 aaKnown RBP18.56■□□□□ 0.56
LITAF-201ENST00000339430 MCM9Q9NXL9 1143 aa18.56■□□□□ 0.56
LITAF-201ENST00000339430 DACH1Q9UI36 760 aa18.56■□□□□ 0.56
LITAF-201ENST00000339430 TTF2Q9UNY4 1162 aaKnown RBP18.56■□□□□ 0.56
LITAF-201ENST00000339430 VWA3AA6NCI4 1184 aa18.55■□□□□ 0.56
LITAF-201ENST00000339430 ORC4O43929 436 aa18.55■□□□□ 0.56
LITAF-201ENST00000339430 SYCP1Q15431 976 aa18.55■□□□□ 0.56
LITAF-201ENST00000339430 TTC38Q5R3I4 469 aa18.55■□□□□ 0.56
LITAF-201ENST00000339430 KLHL10Q6JEL2 608 aa18.55■□□□□ 0.56
LITAF-201ENST00000339430 HOMER1Q86YM7 354 aa18.55■□□□□ 0.56
LITAF-201ENST00000339430 SH3RF3Q8TEJ3 882 aaPredicted RBP18.55■□□□□ 0.56
LITAF-201ENST00000339430 SUGT1Q9Y2Z0 365 aa18.55■□□□□ 0.56
LITAF-201ENST00000339430 USP17L3A6NCW0 530 aa18.55■□□□□ 0.56
LITAF-201ENST00000339430 USP17L4A6NCW7 530 aa18.55■□□□□ 0.56
LITAF-201ENST00000339430 YDJCA8MPS7 323 aa18.55■□□□□ 0.56
LITAF-201ENST00000339430 BTDP43251 543 aa18.55■□□□□ 0.56
LITAF-201ENST00000339430 DACT2Q5SW24 774 aa18.55■□□□□ 0.56
LITAF-201ENST00000339430 USP17L1Q7RTZ2 530 aa18.55■□□□□ 0.56
LITAF-201ENST00000339430 SLF2Q8IX21 1173 aa18.55■□□□□ 0.56
LITAF-201ENST00000339430 TNFRSF25Q93038 417 aa18.55■□□□□ 0.56
LITAF-201ENST00000339430 PRDM10Q9NQV6 1147 aa18.55■□□□□ 0.56
LITAF-201ENST00000339430 ATP8A2Q9NTI2 1148 aa18.55■□□□□ 0.56
LITAF-201ENST00000339430 KIF2AO00139 706 aaPredicted RBP18.54■□□□□ 0.56
LITAF-201ENST00000339430 NLRP5P59047 1200 aa18.54■□□□□ 0.56
LITAF-201ENST00000339430 PTGDRQ13258 359 aa18.54■□□□□ 0.56
LITAF-201ENST00000339430 DHX8Q14562 1220 aaKnown RBP18.54■□□□□ 0.56
LITAF-201ENST00000339430 PIK3AP1Q6ZUJ8 805 aa18.54■□□□□ 0.56
LITAF-201ENST00000339430 ENOX1Q8TC92 643 aaKnown RBP18.54■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms